Wall clock time and date at job start Tue Mar 31 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39305 * 119.05785 * 2 1 4 4 C 1.38862 * 119.57877 * 179.72579 * 3 2 1 5 5 C 1.47904 * 121.11075 * 180.25623 * 4 3 2 6 6 O 1.21546 * 119.99944 * 139.69742 * 5 4 3 7 7 N 1.34777 * 120.00215 * 319.68874 * 5 4 3 8 8 C 1.47425 * 125.64209 * 4.37542 * 7 5 4 9 9 C 1.54698 * 104.93781 * 204.07423 * 8 7 5 10 10 C 1.55160 * 101.67618 * 323.28067 * 9 8 7 11 11 C 1.47016 * 125.64976 * 184.68821 * 7 5 4 12 12 H 1.09001 * 109.88944 * 59.48386 * 11 7 5 13 13 C 1.53009 * 109.88127 * 298.31611 * 11 7 5 14 14 N 1.46506 * 109.46526 * 76.01998 * 13 11 7 15 15 C 1.36939 * 119.99548 * 187.07135 * 14 13 11 16 16 H 1.08000 * 119.99776 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99713 * 180.02562 * 15 14 13 18 18 N 1.31609 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99598 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47350 * 119.99710 * 19 17 15 22 22 H 1.48504 * 109.46784 * 239.99678 * 19 17 15 23 23 C 1.41819 * 117.77521 * 0.26678 * 4 3 2 24 24 C 1.40098 * 121.37081 * 180.02562 * 23 4 3 25 25 C 1.36260 * 119.64140 * 179.97438 * 24 23 4 26 26 C 1.39339 * 120.83509 * 0.02562 * 25 24 23 27 27 C 1.36069 * 121.05361 * 359.97322 * 26 25 24 28 28 C 1.40702 * 119.73547 * 0.04921 * 27 26 25 29 29 N 1.30970 * 119.05955 * 180.34013 * 2 1 3 30 30 H 1.09000 * 109.46877 * 90.00208 * 1 2 3 31 31 H 1.09000 * 109.47099 * 210.00082 * 1 2 3 32 32 H 1.08993 * 109.47127 * 330.00124 * 1 2 3 33 33 H 1.08004 * 120.21481 * 359.97438 * 3 2 1 34 34 H 1.08996 * 110.37087 * 323.00357 * 8 7 5 35 35 H 1.08998 * 110.36754 * 85.33163 * 8 7 5 36 36 H 1.09000 * 111.09755 * 205.11252 * 9 8 7 37 37 H 1.08996 * 110.84636 * 81.33969 * 9 8 7 38 38 H 1.09005 * 110.71606 * 276.97545 * 10 9 8 39 39 H 1.08995 * 110.71655 * 153.70305 * 10 9 8 40 40 H 1.09000 * 109.46857 * 196.01661 * 13 11 7 41 41 H 1.08999 * 109.46815 * 316.02213 * 13 11 7 42 42 H 0.96995 * 120.00482 * 7.06279 * 14 13 11 43 43 H 0.97000 * 120.00196 * 180.02562 * 18 17 15 44 44 H 1.07994 * 120.18353 * 0.02562 * 24 23 4 45 45 H 1.07999 * 119.58082 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.47789 * 179.97438 * 26 25 24 47 47 H 1.07991 * 120.13138 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1836 1.2177 0.0000 4 6 3.5722 1.2303 0.0058 5 6 4.3248 2.5035 0.0116 6 8 5.3223 2.6167 0.6969 7 7 3.9047 3.5382 -0.7430 8 6 2.6688 3.5698 -1.5461 9 6 2.9363 4.6217 -2.6483 10 6 3.7695 5.6795 -1.8774 11 6 4.6063 4.8198 -0.9067 12 1 5.5985 4.6487 -1.3242 13 6 4.7224 5.5259 0.4458 14 7 5.7707 4.8843 1.2431 15 6 5.9588 5.2512 2.5489 16 1 5.3346 6.0138 2.9908 17 6 6.9525 4.6437 3.3043 18 7 7.7134 3.7149 2.7655 19 14 7.2095 5.1448 5.0854 20 1 6.2320 6.2022 5.4481 21 1 7.0121 3.9648 5.9650 22 1 8.5892 5.6661 5.2587 23 6 4.2445 -0.0184 0.0057 24 6 5.6434 -0.0935 0.0118 25 6 6.2528 -1.3122 0.0120 26 6 5.5022 -2.4861 0.0056 27 6 4.1420 -2.4495 -0.0004 28 6 3.4773 -1.2093 -0.0013 29 7 2.1432 -1.1448 -0.0068 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6318 2.1461 -0.0004 34 1 2.4806 2.5928 -1.9912 35 1 1.8236 3.8760 -0.9298 36 1 2.0040 5.0508 -3.0157 37 1 3.5137 4.1893 -3.4654 38 1 3.1173 6.3580 -1.3274 39 1 4.4163 6.2322 -2.5587 40 1 4.9762 6.5741 0.2877 41 1 3.7713 5.4579 0.9739 42 1 6.3315 4.1997 0.8461 43 1 8.4075 3.2901 3.2934 44 1 6.2357 0.8095 0.0172 45 1 7.3313 -1.3690 0.0163 46 1 6.0080 -3.4404 0.0055 47 1 3.5749 -3.3685 -0.0049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324275808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:46 Heat of formation + Delta-G solvation = 32.941069 kcal Electronic energy + Delta-G solvation = -30123.908700 eV Core-core repulsion = 26271.569361 eV Total energy + Delta-G solvation = -3852.339339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23438 -40.86000 -38.51611 -38.29973 -36.29431 -34.62304 -33.24349 -32.98987 -32.58638 -31.00603 -30.26403 -28.71590 -26.80522 -25.94133 -24.53895 -24.24999 -23.52986 -22.74404 -21.86139 -20.07343 -19.32116 -19.06587 -18.34012 -17.94964 -17.58745 -16.74419 -16.54757 -16.01010 -15.85319 -15.68409 -15.38009 -15.22906 -14.87359 -14.83021 -14.68198 -14.39345 -14.22950 -13.97988 -13.87095 -13.60762 -13.28601 -13.13011 -13.02630 -12.95699 -12.74336 -12.53347 -12.37414 -12.31922 -12.24261 -12.10746 -11.98621 -11.64653 -11.52277 -11.50538 -11.08758 -10.91696 -10.33853 -9.72038 -9.60086 -9.27860 -8.79514 -7.82175 -5.08625 -0.87583 -0.26644 0.70630 1.39118 1.41933 1.50926 1.73922 1.87112 2.03120 2.57030 3.00529 3.14523 3.29721 3.46378 3.56870 3.63481 3.67962 3.73052 3.83676 3.99733 4.09925 4.14624 4.24046 4.33604 4.35000 4.39267 4.40461 4.52195 4.62188 4.73014 4.79749 4.81917 4.84058 4.87299 4.89026 5.00063 5.00882 5.04347 5.13722 5.15906 5.17856 5.33682 5.38709 5.45042 5.48083 5.51673 5.57550 5.84081 6.34979 6.53907 6.80480 7.21983 7.47604 8.32362 8.57617 9.39926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.004686 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.449080 B = 5973.326441 C = 7741.422639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.152 3.848 3 C -0.135 4.135 4 C -0.070 4.070 5 C 0.540 3.460 6 O -0.504 6.504 7 N -0.608 5.608 8 C 0.086 3.914 9 C -0.118 4.118 10 C -0.113 4.113 11 C 0.131 3.869 12 H 0.048 0.952 13 C 0.143 3.857 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.064 0.936 17 C -0.075 4.075 18 N -0.953 5.953 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.300 1.300 22 H -0.290 1.290 23 C -0.096 4.096 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.087 4.087 27 C -0.104 4.104 28 C 0.114 3.886 29 N -0.478 5.478 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.013 0.987 42 H 0.386 0.614 43 H 0.242 0.758 44 H 0.110 0.890 45 H 0.142 0.858 46 H 0.170 0.830 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 -7.762 -15.528 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.001 4.001 3 C -0.156 4.156 4 C -0.081 4.081 5 C 0.327 3.673 6 O -0.377 6.377 7 N -0.343 5.343 8 C -0.035 4.035 9 C -0.155 4.155 10 C -0.151 4.151 11 C 0.028 3.972 12 H 0.067 0.933 13 C 0.015 3.985 14 N -0.382 5.382 15 C -0.374 4.374 16 H 0.082 0.918 17 C -0.268 4.268 18 N -0.603 5.603 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.228 1.228 22 H -0.218 1.218 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.007 4.007 29 N -0.188 5.188 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.185 0.815 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.031 0.969 42 H 0.225 0.775 43 H 0.051 0.949 44 H 0.128 0.872 45 H 0.160 0.840 46 H 0.188 0.812 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.126 -8.507 -14.982 24.293 hybrid contribution 1.706 0.951 1.434 2.423 sum -15.421 -7.557 -13.548 21.873 Atomic orbital electron populations 1.20910 0.84770 1.04927 1.05077 1.22106 0.99201 0.86845 0.91967 1.22620 0.92172 1.01321 0.99437 1.20477 0.95202 0.92468 0.99917 1.18302 0.85299 0.83395 0.80318 1.91013 1.26270 1.81213 1.39244 1.48446 1.25111 1.13667 1.47106 1.22789 0.86212 1.01454 0.93055 1.22762 1.02086 0.94503 0.96180 1.22642 0.98614 0.97200 0.96643 1.21914 0.96243 0.83522 0.95560 0.93334 1.21184 0.91221 0.94998 0.91068 1.42999 1.39041 1.46460 1.09661 1.19571 1.12316 1.15630 0.89842 0.91783 1.25488 0.99630 0.99750 1.01884 1.69942 1.23678 1.30213 1.36505 0.85205 0.77453 0.76994 0.80950 1.19094 1.22824 1.21757 1.18809 0.95052 0.93173 1.02869 1.21283 0.93561 0.99643 0.98774 1.21296 1.01647 0.91919 0.98742 1.21308 0.93482 0.99334 0.96533 1.21097 0.94732 0.95985 1.00415 1.19101 0.89327 0.93068 0.99179 1.67715 1.08153 1.29605 1.13373 0.87694 0.89998 0.88385 0.81491 0.89795 0.89425 0.86009 0.90442 0.89017 0.88391 0.95487 0.96948 0.77547 0.94933 0.87240 0.83995 0.81211 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.14 71.24 0.72 -0.62 16 2 C 0.15 3.62 6.78 42.95 0.29 3.91 16 3 C -0.14 -3.56 7.68 22.68 0.17 -3.39 16 4 C -0.07 -2.47 5.46 -19.68 -0.11 -2.58 16 5 C 0.54 22.36 6.98 86.80 0.61 22.97 16 6 O -0.50 -27.17 11.07 -3.86 -0.04 -27.21 16 7 N -0.61 -19.89 3.07 -791.79 -2.43 -22.32 16 8 C 0.09 1.70 5.24 86.78 0.45 2.16 16 9 C -0.12 -1.69 7.07 31.91 0.23 -1.47 16 10 C -0.11 -2.26 6.44 31.78 0.20 -2.06 16 11 C 0.13 4.42 3.08 45.34 0.14 4.56 16 12 H 0.05 1.88 8.11 -2.39 -0.02 1.86 16 13 C 0.14 6.21 5.61 86.38 0.48 6.70 16 14 N -0.73 -41.97 4.10 -343.42 -1.41 -43.38 16 15 C -0.24 -15.00 9.99 84.03 0.84 -14.16 16 16 H 0.06 3.84 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -4.76 5.50 84.86 0.47 -4.30 16 18 N -0.95 -64.70 13.06 21.65 0.28 -64.41 16 19 Si 0.96 50.71 29.55 68.60 2.03 52.74 16 20 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 23 C -0.10 -3.53 5.76 -21.10 -0.12 -3.65 16 24 C -0.11 -4.37 9.18 22.26 0.20 -4.16 16 25 C -0.12 -3.55 9.96 22.07 0.22 -3.33 16 26 C -0.09 -2.05 9.94 22.03 0.22 -1.83 16 27 C -0.10 -2.64 9.98 22.37 0.22 -2.42 16 28 C 0.11 3.60 6.61 40.33 0.27 3.87 16 29 N -0.48 -13.59 10.19 -176.85 -1.80 -15.39 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 33 H 0.17 3.36 5.98 -2.91 -0.02 3.35 16 34 H 0.08 1.51 6.77 -2.39 -0.02 1.49 16 35 H 0.09 1.40 7.36 -2.39 -0.02 1.38 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.66 7.85 -2.38 -0.02 1.65 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.39 24.05 5.15 -92.71 -0.48 23.58 16 43 H 0.24 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.11 5.05 5.98 -2.91 -0.02 5.03 16 45 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.16 3.13 8.06 -2.92 -0.02 3.10 16 Total: -1.00 -89.50 376.27 2.66 -86.84 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.52 Total: 32.95 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.51 Total: 0.20 kcal Atomic # 7 Polarization: -140.15 SS G_CDS: -5.35 Total: -145.51 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.03 Total: 52.74 kcal Total: -89.50 2.66 -86.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.777 kcal (2) G-P(sol) polarization free energy of solvation -89.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds