Wall clock time and date at job start Tue Mar 31 2020 22:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 110.29286 * 2 1 4 4 N 1.46499 * 109.46967 * 60.68178 * 3 2 1 5 5 C 1.36941 * 120.00155 * 180.02562 * 4 3 2 6 6 H 1.07995 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.38812 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00044 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99900 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46945 * 89.99882 * 9 7 5 11 11 H 1.48501 * 109.47101 * 210.00190 * 9 7 5 12 12 H 1.48505 * 109.46880 * 330.00028 * 9 7 5 13 13 C 1.54619 * 110.41293 * 237.80961 * 2 1 3 14 14 C 1.54600 * 102.91406 * 262.76298 * 13 2 1 15 15 N 1.48117 * 103.41871 * 322.86660 * 14 13 2 16 16 C 1.34771 * 127.03355 * 219.28276 * 15 14 13 17 17 O 1.21552 * 119.99970 * 4.85017 * 16 15 14 18 18 C 1.47888 * 120.00427 * 184.85210 * 16 15 14 19 19 C 1.40601 * 119.72469 * 14.86502 * 18 16 15 20 20 C 1.35851 * 120.94925 * 179.97438 * 19 18 16 21 21 C 1.40495 * 119.88258 * 359.97438 * 20 19 18 22 22 C 1.40479 * 121.84138 * 180.02562 * 21 20 19 23 23 N 1.31213 * 119.93898 * 179.97438 * 22 21 20 24 24 C 1.32553 * 122.80651 * 0.02562 * 23 22 21 25 25 C 1.36228 * 121.84576 * 0.27059 * 24 23 22 26 26 C 1.40758 * 118.67147 * 359.46969 * 25 24 23 27 27 C 1.38526 * 119.73276 * 194.83839 * 18 16 15 28 28 C 1.47492 * 105.93397 * 39.02414 * 15 14 13 29 29 H 1.08996 * 109.47113 * 299.31795 * 1 2 3 30 30 H 1.09008 * 109.47035 * 59.31639 * 1 2 3 31 31 H 1.09000 * 109.47503 * 179.31269 * 1 2 3 32 32 H 1.09004 * 109.47737 * 180.68012 * 3 2 1 33 33 H 1.08999 * 109.47474 * 300.68598 * 3 2 1 34 34 H 0.96999 * 120.00022 * 359.97438 * 4 3 2 35 35 H 0.96997 * 119.99859 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.73929 * 21.25258 * 13 2 1 37 37 H 1.09006 * 110.74355 * 144.57226 * 13 2 1 38 38 H 1.08997 * 110.61841 * 204.35411 * 14 13 2 39 39 H 1.08996 * 110.54244 * 81.34351 * 14 13 2 40 40 H 1.07999 * 119.53055 * 359.95146 * 19 18 16 41 41 H 1.07999 * 120.05940 * 180.02562 * 20 19 18 42 42 H 1.07995 * 120.03349 * 0.02562 * 22 21 20 43 43 H 1.08003 * 119.08316 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.66165 * 179.72723 * 25 24 23 45 45 H 1.07998 * 120.36728 * 0.04711 * 27 18 16 46 46 H 1.08996 * 109.90869 * 94.13668 * 28 15 14 47 47 H 1.08998 * 109.91263 * 215.41763 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 7 1.5956 2.1275 1.2043 5 6 1.9471 3.4330 1.4223 6 1 2.5675 3.9518 0.7066 7 6 1.5069 4.0890 2.5637 8 7 1.8453 5.3436 2.7734 9 14 0.4344 3.1913 3.8020 10 1 1.2956 2.5300 4.8151 11 1 -0.4645 4.1632 4.4747 12 1 -0.3804 2.1670 3.1004 13 6 2.0692 -0.7720 -1.2263 14 6 2.3677 -2.1743 -0.6480 15 7 2.8825 -1.8836 0.7101 16 6 3.8946 -2.5070 1.3451 17 8 4.5463 -3.3535 0.7653 18 6 4.2124 -2.1612 2.7475 19 6 3.2868 -1.4294 3.5120 20 6 3.5529 -1.0988 4.8025 21 6 4.7680 -1.4903 5.3892 22 6 5.0853 -1.1712 6.7199 23 7 6.2311 -1.5562 7.2304 24 6 7.1284 -2.2469 6.5413 25 6 6.9199 -2.6014 5.2426 26 6 5.7103 -2.2290 4.6267 27 6 5.4194 -2.5613 3.2971 28 6 2.0650 -0.7682 1.2228 29 1 -0.3633 0.5032 0.8960 30 1 -0.3633 0.5245 -0.8839 31 1 -0.3634 -1.0276 -0.0123 32 1 3.1504 1.4195 -0.0122 33 1 1.6947 1.9577 -0.8837 34 1 1.0380 1.6616 1.8469 35 1 1.5374 5.8021 3.5708 36 1 1.3135 -0.8285 -2.0098 37 1 2.9824 -0.3103 -1.6022 38 1 3.1243 -2.6828 -1.2454 39 1 1.4552 -2.7681 -0.5945 40 1 2.3509 -1.1255 3.0670 41 1 2.8313 -0.5367 5.3768 42 1 4.3864 -0.6101 7.3226 43 1 8.0527 -2.5326 7.0214 44 1 7.6661 -3.1606 4.6978 45 1 6.1285 -3.1229 2.7071 46 1 1.2331 -1.1570 1.8100 47 1 2.6794 -0.1088 1.8358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324814289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:24 Heat of formation + Delta-G solvation = 32.907252 kcal Electronic energy + Delta-G solvation = -29539.450377 eV Core-core repulsion = 25687.109571 eV Total energy + Delta-G solvation = -3852.340806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14181 -41.26349 -39.50657 -38.05548 -36.58193 -34.47306 -34.05579 -33.12465 -32.26565 -30.82977 -30.37295 -27.87898 -27.59125 -26.18254 -24.94452 -24.52093 -23.50611 -22.99380 -21.13382 -20.58874 -19.81276 -19.19128 -18.25558 -17.74205 -17.33912 -17.03299 -16.55564 -16.48292 -16.05574 -15.90004 -15.49460 -15.22563 -15.18712 -14.88181 -14.75684 -14.68028 -14.43779 -14.37114 -13.85365 -13.63956 -13.53718 -13.27408 -13.20322 -13.02262 -12.91590 -12.84064 -12.63969 -12.28681 -12.10198 -11.87263 -11.69694 -11.46399 -11.45017 -11.29916 -11.19497 -10.93648 -10.55810 -10.25590 -9.83938 -9.26585 -9.15483 -7.98604 -5.32855 -0.90056 -0.39701 0.74436 1.37415 1.39025 1.45519 1.53052 1.77125 2.20768 2.52817 2.98726 3.16241 3.32377 3.37015 3.42516 3.47492 3.61138 3.70299 3.71246 3.77313 3.94136 3.97299 4.01225 4.22456 4.25675 4.31354 4.34502 4.52247 4.54923 4.58317 4.66760 4.71645 4.76171 4.81910 4.86425 4.95480 4.96736 5.03507 5.04941 5.12417 5.17430 5.19573 5.28042 5.29811 5.50430 5.55257 5.65299 5.79285 6.23847 6.31403 6.89856 6.90569 7.12039 7.85628 8.07422 9.23165 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004631 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.043436 B = 6044.241720 C = 8649.401800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.749 5.749 5 C -0.235 4.235 6 H 0.049 0.951 7 C -0.063 4.063 8 N -0.987 5.987 9 Si 0.946 3.054 10 H -0.265 1.265 11 H -0.302 1.302 12 H -0.240 1.240 13 C -0.114 4.114 14 C 0.104 3.896 15 N -0.610 5.610 16 C 0.574 3.426 17 O -0.573 6.573 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.109 4.109 22 C 0.139 3.861 23 N -0.504 5.504 24 C 0.065 3.935 25 C -0.145 4.145 26 C -0.050 4.050 27 C -0.050 4.050 28 C 0.093 3.907 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.012 0.988 33 H 0.030 0.970 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.187 0.813 43 H 0.182 0.818 44 H 0.166 0.834 45 H 0.148 0.852 46 H 0.097 0.903 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -20.825 0.957 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.043 3.957 4 N -0.396 5.396 5 C -0.366 4.366 6 H 0.067 0.933 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.229 1.229 12 H -0.164 1.164 13 C -0.153 4.153 14 C -0.017 4.017 15 N -0.341 5.341 16 C 0.364 3.636 17 O -0.454 6.454 18 C -0.127 4.127 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.032 4.032 23 N -0.212 5.212 24 C -0.077 4.077 25 C -0.164 4.164 26 C -0.055 4.055 27 C -0.069 4.069 28 C -0.029 4.029 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.030 0.970 33 H 0.048 0.952 34 H 0.203 0.797 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.204 0.796 43 H 0.199 0.801 44 H 0.184 0.816 45 H 0.166 0.834 46 H 0.115 0.885 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.864 -20.998 1.473 21.132 hybrid contribution -0.456 0.311 -0.122 0.565 sum 1.408 -20.687 1.350 20.779 Atomic orbital electron populations 1.21836 0.91586 1.02895 1.02624 1.21668 0.97551 0.93527 0.95029 1.20799 0.95588 0.90534 0.88781 1.42608 1.62155 1.10326 1.24485 1.18976 1.25014 0.88365 1.04247 0.93297 1.25543 1.02609 0.96663 1.00650 1.69907 1.51987 1.12415 1.29441 0.85545 0.79142 0.78538 0.79580 1.19084 1.22894 1.16444 1.22731 1.02358 0.93441 0.96740 1.22628 0.99901 0.97750 0.81396 1.48693 1.32464 1.34402 1.18569 1.18069 0.78726 0.80683 0.86082 1.90733 1.51031 1.35238 1.68421 1.19972 0.96876 1.02160 0.93684 1.21956 1.00911 0.96461 0.94700 1.21244 0.96040 0.98354 0.95198 1.19406 0.95869 0.99406 0.96419 1.23663 0.93674 0.94612 0.91232 1.67448 1.03079 1.11060 1.39628 1.22690 0.98821 0.94446 0.91785 1.22261 0.96540 1.00910 0.96732 1.18352 0.95442 0.97801 0.93896 1.21469 0.95654 0.96283 0.93506 1.22858 0.95046 0.87734 0.97247 0.93363 0.91445 0.89883 0.97037 0.95211 0.79679 0.93463 0.86712 0.91464 0.90150 0.88244 0.82423 0.82300 0.79577 0.80116 0.81634 0.83430 0.88524 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.04 71.98 0.58 -2.09 16 2 C -0.08 -1.82 0.67 -51.30 -0.03 -1.85 16 3 C 0.17 5.80 4.90 86.38 0.42 6.22 16 4 N -0.75 -31.62 4.68 -343.46 -1.61 -33.23 16 5 C -0.24 -12.85 10.47 84.03 0.88 -11.97 16 6 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 7 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 8 N -0.99 -62.01 13.97 21.65 0.30 -61.71 16 9 Si 0.95 41.60 27.74 68.60 1.90 43.50 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.24 -9.03 6.52 99.48 0.65 -8.38 16 13 C -0.11 -2.16 6.16 31.69 0.20 -1.96 16 14 C 0.10 2.02 7.09 86.61 0.61 2.64 16 15 N -0.61 -15.09 3.29 -813.44 -2.68 -17.77 16 16 C 0.57 16.77 7.77 86.80 0.67 17.44 16 17 O -0.57 -19.56 16.60 -3.88 -0.06 -19.62 16 18 C -0.12 -3.34 5.82 -20.08 -0.12 -3.46 16 19 C -0.12 -3.05 8.11 22.29 0.18 -2.87 16 20 C -0.09 -2.07 9.77 22.27 0.22 -1.85 16 21 C -0.11 -2.63 5.75 -21.26 -0.12 -2.75 16 22 C 0.14 3.10 11.04 85.33 0.94 4.04 16 23 N -0.50 -11.85 10.29 -195.51 -2.01 -13.86 16 24 C 0.07 1.27 11.07 84.12 0.93 2.20 16 25 C -0.15 -2.82 9.88 22.42 0.22 -2.59 16 26 C -0.05 -1.20 5.74 -21.29 -0.12 -1.32 16 27 C -0.05 -1.28 9.37 22.79 0.21 -1.07 16 28 C 0.09 2.23 3.79 86.53 0.33 2.56 16 29 H 0.05 1.15 6.99 -2.39 -0.02 1.13 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.37 14.24 4.13 -92.71 -0.38 13.86 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.11 1.55 7.86 -2.39 -0.02 1.53 16 37 H 0.07 1.44 7.86 -2.38 -0.02 1.43 16 38 H 0.08 1.68 7.81 -2.39 -0.02 1.66 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.16 3.56 3.74 -2.91 -0.01 3.55 16 41 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 45 H 0.15 3.52 7.69 -2.91 -0.02 3.49 16 46 H 0.10 1.87 6.78 -2.39 -0.02 1.86 16 47 H 0.08 2.24 5.45 -2.39 -0.01 2.23 16 Total: -1.00 -74.85 375.87 2.87 -71.98 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.56 Total: 32.51 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 6.47 Total: -1.81 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -6.00 Total: -126.57 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.06 Total: -19.62 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.90 Total: 43.50 kcal Total: -74.85 2.87 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324814289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.887 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds