Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38357 * 120.34804 * 2 1 4 4 N 1.31917 * 121.07684 * 180.02562 * 3 2 1 5 5 C 1.31698 * 121.88545 * 359.68060 * 4 3 2 6 6 C 1.39527 * 120.55795 * 0.57912 * 5 4 3 7 7 C 1.47848 * 120.55484 * 179.72748 * 6 5 4 8 8 O 1.21548 * 119.99543 * 179.72154 * 7 6 5 9 9 N 1.34771 * 119.99742 * 359.72958 * 7 6 5 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38234 * 119.99770 * 269.72527 * 11 10 9 13 13 C 1.38239 * 119.99901 * 179.76875 * 12 11 10 14 14 C 1.38240 * 119.99645 * 0.50240 * 13 12 11 15 15 C 1.50698 * 119.99659 * 179.72727 * 14 13 12 16 16 H 1.08996 * 109.46813 * 160.02550 * 15 14 13 17 17 C 1.53003 * 109.47156 * 280.02259 * 15 14 13 18 18 N 1.46496 * 109.47170 * 40.02325 * 15 14 13 19 19 C 1.36944 * 119.99765 * 154.99989 * 18 15 14 20 20 H 1.07994 * 120.00274 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99927 * 180.02562 * 19 18 15 22 22 N 1.31624 * 120.00176 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00092 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47308 * 59.99923 * 23 21 19 25 25 H 1.48504 * 109.47444 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47075 * 299.99884 * 23 21 19 27 27 C 1.38227 * 120.00205 * 359.74956 * 14 13 12 28 28 C 1.38232 * 119.99860 * 89.99969 * 11 10 9 29 29 C 1.38352 * 120.34468 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47047 * 269.97952 * 1 2 3 31 31 H 1.09004 * 109.46949 * 29.98196 * 1 2 3 32 32 H 1.09000 * 109.46714 * 149.98085 * 1 2 3 33 33 H 1.08001 * 119.45804 * 0.02562 * 3 2 1 34 34 H 1.07993 * 119.72376 * 180.28739 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 1.08001 * 120.00330 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.99843 * 180.23314 * 13 12 11 40 40 H 1.09000 * 109.47306 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47042 * 300.00536 * 17 15 14 42 42 H 1.08996 * 109.47022 * 60.00419 * 17 15 14 43 43 H 0.96999 * 120.00479 * 334.99897 * 18 15 14 44 44 H 0.96998 * 120.00099 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.00251 * 179.97438 * 27 14 13 46 46 H 1.07998 * 120.00407 * 0.02562 * 28 11 10 47 47 H 1.07996 * 120.85913 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2350 0.1015 0.0052 6 6 3.6054 -1.1437 -0.0001 7 6 4.4024 -2.3889 0.0003 8 8 3.8433 -3.4682 0.0008 9 7 5.7487 -2.3273 0.0002 10 6 6.5384 -3.5613 0.0011 11 6 8.0059 -3.2185 0.0003 12 6 8.6798 -3.0681 -1.1973 13 6 10.0248 -2.7489 -1.1982 14 6 10.6983 -2.5905 -0.0014 15 6 12.1660 -2.2486 -0.0024 16 1 12.4405 -1.8230 0.9628 17 6 12.9849 -3.5167 -0.2519 18 7 12.4398 -1.2742 -1.0615 19 6 13.5201 -0.4387 -0.9606 20 1 14.1700 -0.4978 -0.1001 21 6 13.7792 0.4849 -1.9639 22 7 12.9869 0.5573 -3.0125 23 14 15.2524 1.6251 -1.8261 24 1 16.4972 0.8187 -1.7506 25 1 15.3075 2.5091 -3.0180 26 1 15.1242 2.4535 -0.6003 27 6 10.0257 -2.7460 1.1961 28 6 8.6794 -3.0601 1.1970 29 6 2.2060 -1.1940 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6630 2.1275 0.0004 34 1 5.3136 0.1559 0.0093 35 1 6.1948 -1.4660 -0.0004 36 1 6.3015 -4.1436 0.8916 37 1 6.3014 -4.1450 -0.8884 38 1 8.1547 -3.1966 -2.1323 39 1 10.5504 -2.6277 -2.1339 40 1 14.0465 -3.2696 -0.2521 41 1 12.7811 -4.2417 0.5361 42 1 12.7104 -3.9424 -1.2170 43 1 11.8559 -1.2209 -1.8342 44 1 13.1682 1.2025 -3.7138 45 1 10.5519 -2.6226 2.1311 46 1 8.1540 -3.1824 2.1326 47 1 1.6858 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326467526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = 8.238060 kcal Electronic energy + Delta-G solvation = -27350.065121 eV Core-core repulsion = 23496.654579 eV Total energy + Delta-G solvation = -3853.410542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75214 -40.70131 -39.97090 -37.45149 -35.90946 -34.66975 -34.15266 -33.29981 -31.90960 -31.57630 -30.03175 -28.27577 -27.40786 -25.94070 -25.03008 -23.81711 -23.75091 -22.91976 -21.54542 -21.08371 -19.39495 -19.01762 -18.01699 -17.75567 -17.15652 -16.80856 -16.56342 -16.40865 -16.03226 -15.84735 -15.38546 -15.21173 -14.97991 -14.95300 -14.47977 -14.34545 -14.26002 -14.14703 -13.76929 -13.69565 -13.50890 -13.47193 -13.40974 -13.05646 -12.85454 -12.79489 -12.69584 -12.42443 -12.18500 -12.01352 -11.60029 -11.58072 -11.43029 -10.98710 -10.91886 -10.52065 -10.27340 -9.96487 -9.78918 -9.55663 -9.01880 -7.93480 -5.21784 -0.44639 0.12846 0.29788 0.53476 1.47651 1.50234 1.56146 1.72524 2.06884 2.56603 2.75780 2.91505 3.26248 3.40692 3.63601 3.64475 3.76663 3.81831 3.87589 3.90272 3.99127 4.04713 4.15452 4.17371 4.35611 4.46300 4.54200 4.59705 4.68083 4.75748 4.77466 4.79830 4.83240 4.93880 5.01075 5.06705 5.12184 5.15539 5.21682 5.22467 5.23982 5.42001 5.50932 5.55786 5.57105 5.62850 5.84377 6.09774 6.28666 6.35250 6.79807 7.01004 7.34933 8.09778 8.33795 9.29784 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002160 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.644541 B =12958.633100 C =14624.806667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.507 5.507 5 C 0.123 3.877 6 C -0.195 4.195 7 C 0.566 3.434 8 O -0.571 6.571 9 N -0.709 5.709 10 C 0.172 3.828 11 C -0.117 4.117 12 C -0.098 4.098 13 C -0.124 4.124 14 C -0.073 4.073 15 C 0.198 3.802 16 H 0.055 0.945 17 C -0.149 4.149 18 N -0.734 5.734 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.278 1.278 27 C -0.121 4.121 28 C -0.092 4.092 29 C -0.030 4.030 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.169 0.831 35 H 0.410 0.590 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.138 0.862 46 H 0.148 0.852 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 -5.136 9.479 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.040 4.040 4 N -0.215 5.215 5 C -0.035 4.035 6 C -0.200 4.200 7 C 0.353 3.647 8 O -0.452 6.452 9 N -0.361 5.361 10 C 0.050 3.950 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.143 4.143 14 C -0.074 4.074 15 C 0.090 3.910 16 H 0.073 0.927 17 C -0.209 4.209 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.801 3.199 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.204 1.204 27 C -0.140 4.140 28 C -0.110 4.110 29 C -0.056 4.056 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.205 0.795 34 H 0.186 0.814 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.156 0.844 46 H 0.166 0.834 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -24.232 -5.027 9.548 26.525 hybrid contribution 0.970 0.284 -0.790 1.282 sum -23.262 -4.743 8.758 25.304 Atomic orbital electron populations 1.20831 0.87153 1.04618 1.03968 1.21267 0.99680 0.92769 1.00366 1.23485 0.89423 0.99245 0.91841 1.67753 1.09352 1.31244 1.13143 1.23169 1.01015 0.86625 0.92669 1.20951 0.95652 0.94182 1.09191 1.18216 0.82301 0.88389 0.75769 1.90757 1.71754 1.30822 1.51850 1.46005 1.05268 1.10831 1.73968 1.20151 0.85381 0.85993 1.03521 1.19728 0.94875 1.03851 0.93339 1.21135 0.93548 0.98476 0.98447 1.20974 0.95210 1.00347 0.97741 1.20332 0.95882 0.97078 0.94098 1.19426 0.89678 0.89667 0.92211 0.92674 1.22261 0.99851 0.97875 1.00908 1.42707 1.31436 1.40605 1.22777 1.19595 1.03140 1.10697 1.03622 0.90516 1.25534 1.02120 1.02062 0.97139 1.69808 1.41104 1.39903 1.11208 0.85241 0.79505 0.78648 0.76546 1.20472 1.22390 1.20401 1.21198 0.94977 1.00453 0.97348 1.21231 0.93733 0.97851 0.98170 1.21818 0.92196 0.99909 0.91726 0.89444 0.89141 0.90530 0.79495 0.81402 0.75241 0.89637 0.90547 0.85023 0.87857 0.93894 0.91191 0.94138 0.79216 0.94114 0.84408 0.83401 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 71.24 0.71 0.05 16 2 C -0.14 -1.80 5.89 -19.81 -0.12 -1.92 16 3 C 0.12 1.69 10.85 84.71 0.92 2.60 16 4 N -0.51 -10.12 10.35 -194.75 -2.01 -12.14 16 5 C 0.12 2.35 10.71 85.02 0.91 3.26 16 6 C -0.19 -3.84 5.89 -19.99 -0.12 -3.96 16 7 C 0.57 12.72 7.78 86.79 0.68 13.39 16 8 O -0.57 -16.29 16.42 -3.87 -0.06 -16.35 16 9 N -0.71 -13.60 5.50 -469.70 -2.58 -16.18 16 10 C 0.17 3.34 5.80 85.63 0.50 3.84 16 11 C -0.12 -2.58 5.25 -19.87 -0.10 -2.69 16 12 C -0.10 -2.57 9.70 22.27 0.22 -2.35 16 13 C -0.12 -4.10 9.06 22.27 0.20 -3.90 16 14 C -0.07 -2.41 4.95 -19.87 -0.10 -2.51 16 15 C 0.20 7.72 3.09 44.25 0.14 7.86 16 16 H 0.06 2.13 7.94 -2.39 -0.02 2.12 16 17 C -0.15 -5.25 9.47 71.98 0.68 -4.57 16 18 N -0.73 -36.61 5.07 -326.51 -1.66 -38.27 16 19 C -0.24 -13.12 9.93 84.03 0.83 -12.28 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 23 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 27 C -0.12 -3.19 9.67 22.27 0.22 -2.97 16 28 C -0.09 -1.97 9.70 22.27 0.22 -1.76 16 29 C -0.03 -0.52 9.39 22.73 0.21 -0.30 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 32 H 0.08 0.43 8.09 -2.39 -0.02 0.42 16 33 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.17 2.66 6.42 -2.91 -0.02 2.64 16 35 H 0.41 6.87 6.53 -92.71 -0.61 6.26 16 36 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.10 3.88 6.92 -2.91 -0.02 3.86 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.37 20.02 6.07 -92.71 -0.56 19.46 16 44 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.14 3.11 8.04 -2.91 -0.02 3.09 16 46 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 47 H 0.15 2.42 7.74 -2.91 -0.02 2.40 16 Total: -1.00 -71.84 398.83 2.28 -69.56 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.17 Total: 36.36 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 6.46 Total: -12.12 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -5.97 Total: -125.50 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.06 Total: -16.35 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.84 2.28 -69.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326467526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.793 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds