Wall clock time and date at job start Tue Mar 31 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36338 * 119.95894 * 2 1 4 4 C 1.38871 * 121.05979 * 179.71832 * 3 2 1 5 5 C 1.38747 * 120.72202 * 0.56263 * 4 3 2 6 6 C 1.47432 * 120.33579 * 179.74168 * 5 4 3 7 7 O 1.21594 * 120.00258 * 179.71870 * 6 5 4 8 8 N 1.34784 * 119.99584 * 359.72114 * 6 5 4 9 9 C 1.46504 * 119.99572 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46751 * 175.67469 * 9 8 6 11 11 N 1.46499 * 112.90922 * 311.32210 * 10 9 8 12 12 C 1.36932 * 120.00589 * 292.60061 * 11 10 9 13 13 H 1.07998 * 119.99560 * 5.77349 * 12 11 10 14 14 C 1.38813 * 120.00213 * 185.77721 * 12 11 10 15 15 N 1.31611 * 120.00254 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99640 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47385 * 59.99728 * 16 14 12 18 18 H 1.48499 * 109.46701 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46866 * 299.99567 * 16 14 12 20 20 C 1.53786 * 113.61259 * 180.02562 * 10 9 8 21 21 C 1.53780 * 87.08135 * 220.02147 * 20 10 9 22 22 C 1.53780 * 87.08144 * 25.43415 * 21 20 10 23 23 C 1.41781 * 119.33198 * 359.46080 * 5 4 3 24 24 N 1.33354 * 121.04837 * 180.27872 * 23 5 4 25 25 C 1.31231 * 121.35008 * 179.97438 * 24 23 5 26 26 C 1.39226 * 121.69867 * 0.02562 * 25 24 23 27 27 C 1.36635 * 119.90860 * 359.97438 * 26 25 24 28 28 C 1.40447 * 119.95262 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47253 * 269.98496 * 1 2 3 30 30 H 1.09006 * 109.47017 * 29.98037 * 1 2 3 31 31 H 1.08995 * 109.47452 * 149.97820 * 1 2 3 32 32 H 1.08004 * 119.47311 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.64271 * 180.27777 * 4 3 2 34 34 H 0.96996 * 119.99941 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46981 * 55.68286 * 9 8 6 36 36 H 1.08999 * 109.47454 * 295.67708 * 9 8 6 37 37 H 0.97009 * 119.99622 * 112.59649 * 11 10 9 38 38 H 0.96998 * 120.00473 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.60651 * 105.47113 * 20 10 9 40 40 H 1.08991 * 113.61502 * 334.57392 * 20 10 9 41 41 H 1.08999 * 113.61072 * 139.98254 * 21 20 10 42 42 H 1.09001 * 113.61326 * 270.89044 * 21 20 10 43 43 H 1.08998 * 113.61556 * 89.11239 * 22 21 20 44 44 H 1.09002 * 113.61286 * 219.93402 * 22 21 20 45 45 H 1.08001 * 119.14943 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.04913 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.92698 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1812 0.0000 4 6 3.5763 1.2079 0.0058 5 6 4.3079 0.0290 0.0001 6 6 5.7817 0.0673 0.0007 7 8 6.4169 -0.9695 0.0008 8 7 6.4250 1.2517 0.0011 9 6 7.8896 1.2898 0.0022 10 6 8.3620 2.7410 -0.1064 11 7 7.6934 3.4796 -1.1805 12 6 7.9241 3.1451 -2.4881 13 1 8.5244 2.2794 -2.7262 14 6 7.3867 3.9187 -3.5077 15 7 6.6549 4.9735 -3.2176 16 14 7.7009 3.4619 -5.2915 17 1 7.1687 2.1009 -5.5551 18 1 7.0228 4.4398 -6.1797 19 1 9.1618 3.4823 -5.5577 20 6 9.8925 2.8916 -0.1143 21 6 9.6970 4.1255 0.7825 22 6 8.3743 3.4870 1.2383 23 6 3.6240 -1.2129 -0.0001 24 7 4.2929 -2.3665 0.0000 25 6 3.6659 -3.5193 0.0002 26 6 2.2758 -3.5960 -0.0002 27 6 1.5303 -2.4510 -0.0004 28 6 2.2082 -1.2169 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6386 2.1112 0.0004 33 1 4.0923 2.1566 0.0103 34 1 5.9183 2.0788 0.0006 35 1 8.2685 0.7200 -0.8463 36 1 8.2637 0.8542 0.9287 37 1 7.0871 4.2056 -0.9653 38 1 6.2790 5.5138 -3.9300 39 1 10.3029 3.1262 -1.0964 40 1 10.4144 2.0717 0.3789 41 1 10.4381 4.2093 1.5774 42 1 9.5649 5.0533 0.2259 43 1 8.4812 2.8298 2.1012 44 1 7.5596 4.2026 1.3496 45 1 4.2432 -4.4321 -0.0001 46 1 1.7873 -4.5592 0.0004 47 1 0.4511 -2.4913 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326855002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:02 Heat of formation + Delta-G solvation = 58.609510 kcal Electronic energy + Delta-G solvation = -29219.609555 eV Core-core repulsion = 25368.383282 eV Total energy + Delta-G solvation = -3851.226272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03799 -39.28063 -38.22010 -37.20873 -34.07188 -33.79321 -33.19588 -31.25584 -30.60626 -29.96912 -28.17856 -26.52599 -25.22937 -24.34968 -23.87828 -23.51545 -22.34271 -21.26149 -19.71688 -18.35001 -18.14808 -17.53371 -17.12992 -17.02820 -15.69108 -15.44703 -15.03185 -14.82898 -14.52740 -14.31880 -14.20495 -14.04401 -13.84314 -13.72173 -13.41494 -13.29793 -13.21843 -12.88010 -12.55445 -12.35841 -12.08579 -11.95828 -11.67907 -11.36212 -11.31303 -11.15412 -11.00789 -10.79490 -10.42532 -10.34634 -10.20487 -10.11618 -9.71189 -9.63943 -9.43917 -8.99197 -8.85325 -8.83963 -8.38531 -8.09712 -7.04472 -5.82178 -3.11661 0.14137 0.78130 1.74612 2.74328 3.43413 3.47383 3.49774 3.55305 3.70959 4.23005 4.28264 4.43886 4.55516 4.60450 4.67835 4.72944 4.93319 5.03963 5.12956 5.22932 5.26257 5.28227 5.31752 5.34724 5.41651 5.51607 5.54516 5.56269 5.71926 5.79903 5.87042 5.89716 5.97643 6.12888 6.16773 6.17971 6.24084 6.31251 6.37532 6.43418 6.44527 6.56291 6.74978 6.79219 6.92725 7.05220 7.19030 7.72648 8.01217 8.19543 8.36578 8.86341 9.48151 10.00726 10.36469 11.39717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003461 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.759610 B = 8089.370100 C = 8903.839860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 C -0.123 4.123 4 C -0.055 4.055 5 C -0.106 4.106 6 C 0.548 3.452 7 O -0.516 6.516 8 N -0.700 5.700 9 C 0.124 3.876 10 C 0.172 3.828 11 N -0.699 5.699 12 C -0.232 4.232 13 H 0.069 0.931 14 C -0.007 4.007 15 N -0.932 5.932 16 Si 0.902 3.098 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.285 1.285 20 C -0.149 4.149 21 C -0.128 4.128 22 C -0.144 4.144 23 C 0.165 3.835 24 N -0.433 5.433 25 C 0.126 3.874 26 C -0.179 4.179 27 C -0.062 4.062 28 C -0.109 4.109 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.158 0.842 46 H 0.135 0.865 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 -9.829 10.821 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.075 4.075 5 C -0.110 4.110 6 C 0.333 3.667 7 O -0.392 6.392 8 N -0.352 5.352 9 C -0.002 4.002 10 C 0.079 3.921 11 N -0.340 5.340 12 C -0.363 4.363 13 H 0.087 0.913 14 C -0.203 4.203 15 N -0.580 5.580 16 Si 0.734 3.266 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.189 4.189 21 C -0.166 4.166 22 C -0.182 4.182 23 C 0.041 3.959 24 N -0.139 5.139 25 C -0.047 4.047 26 C -0.199 4.199 27 C -0.088 4.088 28 C -0.111 4.111 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.175 0.825 46 H 0.153 0.847 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.406 -10.456 10.631 18.183 hybrid contribution -1.203 0.414 -1.171 1.729 sum -11.609 -10.042 9.460 18.030 Atomic orbital electron populations 1.20895 0.90557 1.03388 1.02753 1.19836 0.96162 0.91985 0.96962 1.20742 0.93922 0.98022 1.01406 1.21550 0.94213 0.97804 0.93948 1.20024 0.94241 0.91765 1.04980 1.17855 0.86411 0.84258 0.78128 1.90796 1.67393 1.32431 1.48621 1.45665 1.07923 1.07741 1.73867 1.21775 0.79154 0.98953 1.00322 1.20848 0.92457 0.89690 0.89084 1.42037 1.52121 1.39161 1.00654 1.19053 1.27067 1.07833 0.82337 0.91261 1.24680 1.00643 0.97289 0.97712 1.69629 1.38599 1.18224 1.31562 0.86336 0.77743 0.77375 0.85196 1.21300 1.21750 1.21217 1.23270 0.97927 0.97207 1.00536 1.22627 0.96669 0.98562 0.98713 1.23190 0.98406 0.99679 0.96926 1.18614 0.88810 0.91988 0.96441 1.68352 1.38786 0.97204 1.09579 1.23160 0.91827 0.96457 0.93279 1.21924 0.95719 0.99411 1.02829 1.21452 1.00287 0.91312 0.95769 1.18656 0.93780 0.94306 1.04342 0.90547 0.90700 0.91172 0.84783 0.84278 0.76499 0.91820 0.92788 0.77973 0.93500 0.90619 0.91366 0.92826 0.90002 0.90494 0.91758 0.82512 0.84696 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.53 36.01 0.34 -0.53 16 2 C -0.05 -0.54 5.89 -104.48 -0.62 -1.16 16 3 C -0.12 -1.45 9.56 -40.03 -0.38 -1.83 16 4 C -0.05 -0.78 9.52 -39.16 -0.37 -1.15 16 5 C -0.11 -1.84 5.91 -104.61 -0.62 -2.46 16 6 C 0.55 10.90 7.76 -12.51 -0.10 10.81 16 7 O -0.52 -11.80 15.19 5.28 0.08 -11.72 16 8 N -0.70 -13.04 5.34 -61.38 -0.33 -13.37 16 9 C 0.12 2.36 5.06 -4.04 -0.02 2.34 16 10 C 0.17 3.21 0.91 -131.00 -0.12 3.09 16 11 N -0.70 -15.87 4.56 -46.48 -0.21 -16.09 16 12 C -0.23 -6.08 9.24 -15.06 -0.14 -6.22 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -26.60 13.07 55.49 0.73 -25.87 16 16 Si 0.90 22.31 29.55 -169.99 -5.02 17.29 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.15 -2.63 7.27 -25.92 -0.19 -2.81 16 21 C -0.13 -2.05 7.99 -25.92 -0.21 -2.26 16 22 C -0.14 -2.26 7.37 -25.92 -0.19 -2.45 16 23 C 0.16 2.77 6.61 -84.58 -0.56 2.21 16 24 N -0.43 -7.54 8.44 -10.76 -0.09 -7.63 16 25 C 0.13 1.61 11.15 -17.44 -0.19 1.41 16 26 C -0.18 -1.77 10.03 -39.79 -0.40 -2.17 16 27 C -0.06 -0.64 9.36 -39.19 -0.37 -1.00 16 28 C -0.11 -1.44 5.74 -106.82 -0.61 -2.05 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.44 6.42 -51.93 -0.33 0.11 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.14 1.85 6.37 -52.49 -0.33 1.52 16 34 H 0.40 7.01 6.13 -40.82 -0.25 6.76 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.05 0.96 7.94 -51.93 -0.41 0.54 16 37 H 0.39 9.24 7.88 -40.82 -0.32 8.92 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 40 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 44 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.14 0.95 6.42 -52.49 -0.34 0.61 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -33.42 385.92 -10.44 -43.86 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.57 Total: 14.26 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.84 Total: -6.54 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.09 Total: -62.96 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.42 -10.44 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326855002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.472 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds