Wall clock time and date at job start Tue Mar 31 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36338 * 119.95894 * 2 1 4 4 C 1.38871 * 121.05979 * 179.71832 * 3 2 1 5 5 C 1.38747 * 120.72202 * 0.56263 * 4 3 2 6 6 C 1.47432 * 120.33579 * 179.74168 * 5 4 3 7 7 O 1.21594 * 120.00258 * 179.71870 * 6 5 4 8 8 N 1.34784 * 119.99584 * 359.72114 * 6 5 4 9 9 C 1.46504 * 119.99572 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46751 * 175.67469 * 9 8 6 11 11 N 1.46499 * 112.90922 * 311.32210 * 10 9 8 12 12 C 1.36932 * 120.00589 * 292.60061 * 11 10 9 13 13 H 1.07998 * 119.99560 * 5.77349 * 12 11 10 14 14 C 1.38813 * 120.00213 * 185.77721 * 12 11 10 15 15 N 1.31611 * 120.00254 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99640 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47385 * 59.99728 * 16 14 12 18 18 H 1.48499 * 109.46701 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46866 * 299.99567 * 16 14 12 20 20 C 1.53786 * 113.61259 * 180.02562 * 10 9 8 21 21 C 1.53780 * 87.08135 * 220.02147 * 20 10 9 22 22 C 1.53780 * 87.08144 * 25.43415 * 21 20 10 23 23 C 1.41781 * 119.33198 * 359.46080 * 5 4 3 24 24 N 1.33354 * 121.04837 * 180.27872 * 23 5 4 25 25 C 1.31231 * 121.35008 * 179.97438 * 24 23 5 26 26 C 1.39226 * 121.69867 * 0.02562 * 25 24 23 27 27 C 1.36635 * 119.90860 * 359.97438 * 26 25 24 28 28 C 1.40447 * 119.95262 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47253 * 269.98496 * 1 2 3 30 30 H 1.09006 * 109.47017 * 29.98037 * 1 2 3 31 31 H 1.08995 * 109.47452 * 149.97820 * 1 2 3 32 32 H 1.08004 * 119.47311 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.64271 * 180.27777 * 4 3 2 34 34 H 0.96996 * 119.99941 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46981 * 55.68286 * 9 8 6 36 36 H 1.08999 * 109.47454 * 295.67708 * 9 8 6 37 37 H 0.97009 * 119.99622 * 112.59649 * 11 10 9 38 38 H 0.96998 * 120.00473 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.60651 * 105.47113 * 20 10 9 40 40 H 1.08991 * 113.61502 * 334.57392 * 20 10 9 41 41 H 1.08999 * 113.61072 * 139.98254 * 21 20 10 42 42 H 1.09001 * 113.61326 * 270.89044 * 21 20 10 43 43 H 1.08998 * 113.61556 * 89.11239 * 22 21 20 44 44 H 1.09002 * 113.61286 * 219.93402 * 22 21 20 45 45 H 1.08001 * 119.14943 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.04913 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.92698 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1812 0.0000 4 6 3.5763 1.2079 0.0058 5 6 4.3079 0.0290 0.0001 6 6 5.7817 0.0673 0.0007 7 8 6.4169 -0.9695 0.0008 8 7 6.4250 1.2517 0.0011 9 6 7.8896 1.2898 0.0022 10 6 8.3620 2.7410 -0.1064 11 7 7.6934 3.4796 -1.1805 12 6 7.9241 3.1451 -2.4881 13 1 8.5244 2.2794 -2.7262 14 6 7.3867 3.9187 -3.5077 15 7 6.6549 4.9735 -3.2176 16 14 7.7009 3.4619 -5.2915 17 1 7.1687 2.1009 -5.5551 18 1 7.0228 4.4398 -6.1797 19 1 9.1618 3.4823 -5.5577 20 6 9.8925 2.8916 -0.1143 21 6 9.6970 4.1255 0.7825 22 6 8.3743 3.4870 1.2383 23 6 3.6240 -1.2129 -0.0001 24 7 4.2929 -2.3665 0.0000 25 6 3.6659 -3.5193 0.0002 26 6 2.2758 -3.5960 -0.0002 27 6 1.5303 -2.4510 -0.0004 28 6 2.2082 -1.2169 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6386 2.1112 0.0004 33 1 4.0923 2.1566 0.0103 34 1 5.9183 2.0788 0.0006 35 1 8.2685 0.7200 -0.8463 36 1 8.2637 0.8542 0.9287 37 1 7.0871 4.2056 -0.9653 38 1 6.2790 5.5138 -3.9300 39 1 10.3029 3.1262 -1.0964 40 1 10.4144 2.0717 0.3789 41 1 10.4381 4.2093 1.5774 42 1 9.5649 5.0533 0.2259 43 1 8.4812 2.8298 2.1012 44 1 7.5596 4.2026 1.3496 45 1 4.2432 -4.4321 -0.0001 46 1 1.7873 -4.5592 0.0004 47 1 0.4511 -2.4913 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326855002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:01 Heat of formation + Delta-G solvation = 37.261900 kcal Electronic energy + Delta-G solvation = -29220.535257 eV Core-core repulsion = 25368.383282 eV Total energy + Delta-G solvation = -3852.151974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05123 -40.74161 -39.66185 -38.19299 -35.38452 -35.15675 -34.98962 -32.22051 -31.83546 -31.54609 -29.39935 -27.71821 -26.71128 -25.71233 -25.26755 -24.54652 -23.61396 -22.59657 -21.00217 -19.78026 -19.15060 -19.13370 -18.76714 -18.05030 -16.97068 -16.82018 -16.44769 -16.24646 -15.90601 -15.65270 -15.43732 -15.28510 -15.16830 -14.93750 -14.81458 -14.30282 -14.17436 -14.07759 -13.90116 -13.68755 -13.09162 -13.06262 -12.99290 -12.92597 -12.76895 -12.55112 -12.33060 -12.18516 -12.16706 -11.98918 -11.64358 -11.43681 -11.35183 -11.09516 -10.92115 -10.76903 -10.10495 -9.92359 -9.82120 -9.13794 -8.99786 -7.94476 -5.20862 -0.84134 -0.17541 0.76278 1.42785 1.43790 1.49292 1.73971 2.23041 2.34351 2.53852 3.15046 3.33832 3.36618 3.54159 3.70662 3.75844 3.79326 3.84622 3.92280 3.94111 3.98946 4.07840 4.09262 4.21514 4.42022 4.42722 4.51814 4.67254 4.76535 4.81711 4.83693 4.87290 4.90615 4.91623 4.97290 4.99623 5.10042 5.12895 5.18064 5.19820 5.32238 5.41838 5.42834 5.50418 5.57790 5.66478 5.72346 5.85074 6.29750 6.67742 7.08462 7.36341 7.37347 8.08105 8.34219 9.27365 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003461 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.759610 B = 8089.370100 C = 8903.839860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.140 4.140 4 C -0.046 4.046 5 C -0.157 4.157 6 C 0.543 3.457 7 O -0.559 6.559 8 N -0.698 5.698 9 C 0.132 3.868 10 C 0.159 3.841 11 N -0.701 5.701 12 C -0.221 4.221 13 H 0.058 0.942 14 C -0.058 4.058 15 N -0.957 5.957 16 Si 0.951 3.049 17 H -0.293 1.293 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.149 4.149 21 C -0.118 4.118 22 C -0.127 4.127 23 C 0.138 3.862 24 N -0.498 5.498 25 C 0.118 3.882 26 C -0.173 4.173 27 C -0.052 4.052 28 C -0.129 4.129 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.403 0.597 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.379 0.621 38 H 0.250 0.750 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.175 0.825 46 H 0.180 0.820 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 -10.609 12.144 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.158 4.158 4 C -0.066 4.066 5 C -0.161 4.161 6 C 0.331 3.669 7 O -0.439 6.439 8 N -0.349 5.349 9 C 0.005 3.995 10 C 0.067 3.933 11 N -0.341 5.341 12 C -0.353 4.353 13 H 0.076 0.924 14 C -0.251 4.251 15 N -0.607 5.607 16 Si 0.782 3.218 17 H -0.221 1.221 18 H -0.217 1.217 19 H -0.208 1.208 20 C -0.189 4.189 21 C -0.156 4.156 22 C -0.165 4.165 23 C 0.015 3.985 24 N -0.206 5.206 25 C -0.053 4.053 26 C -0.192 4.192 27 C -0.077 4.077 28 C -0.131 4.131 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.240 0.760 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.213 0.787 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.192 0.808 46 H 0.197 0.803 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.274 -11.236 11.976 21.116 hybrid contribution -0.379 0.497 -1.526 1.649 sum -13.653 -10.739 10.450 20.271 Atomic orbital electron populations 1.21051 0.86969 1.05008 1.04488 1.20383 0.98482 0.90855 0.93079 1.21071 0.92771 0.99849 1.02106 1.21685 0.95644 0.96724 0.92569 1.19938 0.92632 0.93642 1.09915 1.18411 0.87903 0.83702 0.76928 1.90738 1.68626 1.33663 1.50848 1.45651 1.07724 1.07828 1.73673 1.21678 0.79595 0.98692 0.99516 1.21121 0.93009 0.89221 0.89952 1.42019 1.52438 1.39154 1.00497 1.19158 1.25396 1.06711 0.84071 0.92421 1.25204 1.01601 0.97899 1.00420 1.69729 1.39982 1.19138 1.31838 0.85556 0.77594 0.76490 0.82160 1.22058 1.21686 1.20814 1.23298 0.96669 0.99091 0.99855 1.22534 0.97596 0.96657 0.98779 1.23147 0.98350 0.99368 0.95603 1.18859 0.90652 0.91577 0.97413 1.68265 1.41025 0.98684 1.12648 1.23704 0.93933 0.95870 0.91828 1.22323 0.94259 1.01468 1.01176 1.21983 1.02307 0.89913 0.93504 1.18995 0.92529 0.96626 1.04948 0.88420 0.89343 0.89375 0.81803 0.84338 0.75997 0.95357 0.91258 0.78718 0.94063 0.93517 0.88961 0.89594 0.92073 0.87866 0.91400 0.80817 0.80292 0.79999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.53 71.24 0.68 -0.49 16 2 C -0.03 -0.54 5.89 -19.77 -0.12 -0.65 16 3 C -0.14 -3.11 9.56 21.98 0.21 -2.90 16 4 C -0.05 -1.34 9.52 22.54 0.21 -1.13 16 5 C -0.16 -5.79 5.91 -19.86 -0.12 -5.91 16 6 C 0.54 23.20 7.76 86.66 0.67 23.88 16 7 O -0.56 -27.63 15.19 -4.01 -0.06 -27.69 16 8 N -0.70 -27.46 5.34 -466.36 -2.49 -29.95 16 9 C 0.13 5.21 5.06 86.38 0.44 5.64 16 10 C 0.16 5.99 0.91 4.13 0.00 5.99 16 11 N -0.70 -32.78 4.56 -300.96 -1.37 -34.15 16 12 C -0.22 -12.00 9.24 84.03 0.78 -11.22 16 13 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 14 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 15 N -0.96 -55.73 13.07 21.65 0.28 -55.45 16 16 Si 0.95 47.02 29.55 68.60 2.03 49.05 16 17 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 18 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 20 C -0.15 -5.22 7.27 31.12 0.23 -5.00 16 21 C -0.12 -3.60 7.99 31.12 0.25 -3.36 16 22 C -0.13 -3.79 7.37 31.12 0.23 -3.56 16 23 C 0.14 4.79 6.61 40.61 0.27 5.06 16 24 N -0.50 -18.23 8.44 -187.97 -1.59 -19.81 16 25 C 0.12 3.00 11.15 85.02 0.95 3.95 16 26 C -0.17 -2.90 10.03 22.13 0.22 -2.68 16 27 C -0.05 -0.87 9.36 22.52 0.21 -0.66 16 28 C -0.13 -3.22 5.74 -21.29 -0.12 -3.34 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.71 8.08 -2.38 -0.02 0.69 16 31 H 0.09 0.60 6.42 -2.39 -0.02 0.58 16 32 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.14 3.87 6.37 -2.91 -0.02 3.85 16 34 H 0.40 14.91 6.13 -92.71 -0.57 14.34 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 2.50 7.94 -2.39 -0.02 2.48 16 37 H 0.38 18.64 7.88 -92.70 -0.73 17.90 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.05 1.90 7.79 -2.39 -0.02 1.88 16 40 H 0.09 2.77 8.10 -2.39 -0.02 2.75 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 43 H 0.10 2.60 7.96 -2.39 -0.02 2.58 16 44 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 45 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 46 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.18 1.41 6.42 -2.91 -0.02 1.39 16 Total: -1.00 -78.99 385.92 1.97 -77.02 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.29 Total: 40.18 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.46 Total: 0.80 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -5.17 Total: -139.36 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.69 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.99 1.97 -77.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326855002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.279 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds