Wall clock time and date at job start Tue Mar 31 2020 22:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.45957 * 2 1 4 4 C 1.36940 * 120.00483 * 59.99419 * 3 2 1 5 5 H 1.07995 * 119.99358 * 0.02562 * 4 3 2 6 6 C 1.38805 * 120.00108 * 180.02562 * 4 3 2 7 7 N 1.31616 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99849 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46787 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46762 * 299.99983 * 8 6 4 11 11 H 1.48503 * 109.47049 * 59.99905 * 8 6 4 12 12 C 1.53045 * 109.45791 * 119.96839 * 2 1 3 13 13 C 1.53164 * 109.32778 * 181.38647 * 12 2 1 14 14 N 1.46924 * 108.76827 * 305.35873 * 13 12 2 15 15 C 1.34778 * 120.62949 * 233.63076 * 14 13 12 16 16 O 1.21590 * 119.99924 * 174.27632 * 15 14 13 17 17 C 1.47550 * 119.99894 * 354.27979 * 15 14 13 18 18 C 1.38697 * 120.38896 * 305.85465 * 17 15 14 19 19 C 1.38971 * 120.53630 * 179.67823 * 18 17 15 20 20 C 1.36207 * 121.23728 * 0.62997 * 19 18 17 21 21 C 1.40711 * 120.20277 * 359.67538 * 20 19 18 22 22 N 1.33690 * 120.95134 * 179.97438 * 21 20 19 23 23 C 1.31063 * 121.34248 * 180.02562 * 22 21 20 24 24 C 1.39344 * 121.71359 * 359.97438 * 23 22 21 25 25 C 1.36681 * 119.85950 * 359.97438 * 24 23 22 26 26 C 1.40467 * 118.16920 * 0.03590 * 25 24 23 27 27 C 1.46925 * 118.74060 * 53.60762 * 14 13 12 28 28 C 1.53038 * 109.46146 * 240.02091 * 2 1 3 29 29 H 1.09004 * 109.46962 * 60.00690 * 1 2 3 30 30 H 1.09006 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47466 * 300.00184 * 1 2 3 32 32 H 0.97002 * 119.99703 * 239.99645 * 3 2 1 33 33 H 0.97004 * 120.00269 * 0.02562 * 7 6 4 34 34 H 1.08997 * 109.49682 * 301.32523 * 12 2 1 35 35 H 1.09003 * 109.49589 * 61.42049 * 12 2 1 36 36 H 1.08990 * 109.58974 * 185.56998 * 13 12 2 37 37 H 1.09001 * 109.58611 * 65.13861 * 13 12 2 38 38 H 1.08002 * 119.73085 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.38132 * 180.28811 * 19 18 17 40 40 H 1.08001 * 119.90333 * 179.65882 * 20 19 18 41 41 H 1.08004 * 119.14548 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.06765 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.90754 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58851 * 186.61071 * 27 14 13 45 45 H 1.08999 * 109.58923 * 66.18126 * 27 14 13 46 46 H 1.08997 * 109.49839 * 298.58411 * 28 2 1 47 47 H 1.09003 * 109.49363 * 58.64572 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6870 2.2245 1.0269 5 1 1.0664 1.8711 1.8371 6 6 2.1490 3.5334 1.0266 7 7 2.9057 3.9640 0.0395 8 14 1.6980 4.6835 2.4279 9 1 2.3123 6.0149 2.1927 10 1 0.2213 4.8242 2.4968 11 1 2.2024 4.1253 3.7082 12 6 2.0398 -0.7208 1.2501 13 6 3.5710 -0.6889 1.2647 14 7 4.0676 -1.2493 0.0006 15 6 4.9610 -2.2584 0.0008 16 8 5.2856 -2.7832 -1.0469 17 6 5.5449 -2.7265 1.2724 18 6 6.1689 -1.8319 2.1292 19 6 6.7140 -2.2683 3.3308 20 6 6.6636 -3.5800 3.6943 21 6 6.0460 -4.5243 2.8535 22 7 5.9885 -5.8155 3.1952 23 6 5.4156 -6.7016 2.4178 24 6 4.8392 -6.3443 1.2005 25 6 4.8633 -5.0399 0.7929 26 6 5.4788 -4.0948 1.6302 27 6 3.5714 -0.6891 -1.2638 28 6 2.0399 -0.7210 -1.2499 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.1402 3.3667 -0.6880 34 1 1.6573 -0.2207 2.1398 35 1 1.6975 -1.7557 1.2384 36 1 3.9410 -1.2847 2.0989 37 1 3.9140 0.3406 1.3677 38 1 6.2266 -0.7868 1.8631 39 1 7.1915 -1.5549 3.9861 40 1 7.0991 -3.8964 4.6306 41 1 5.3896 -7.7356 2.7286 42 1 4.3738 -7.0964 0.5807 43 1 4.4221 -4.7443 -0.1475 44 1 3.9416 -1.2852 -2.0979 45 1 3.9145 0.3404 -1.3670 46 1 1.6976 -1.7558 -1.2381 47 1 1.6569 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328006287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:51 Heat of formation + Delta-G solvation = 38.658393 kcal Electronic energy + Delta-G solvation = -30062.922607 eV Core-core repulsion = 26210.831189 eV Total energy + Delta-G solvation = -3852.091418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26661 -39.89534 -38.00422 -37.04960 -34.71172 -33.63593 -32.66732 -31.18586 -30.78533 -30.10109 -28.78071 -27.78807 -24.90216 -24.10798 -23.75342 -23.50945 -22.95901 -22.08320 -19.91841 -18.77313 -18.25652 -17.35018 -17.16611 -16.99355 -16.49980 -15.77626 -15.26289 -14.92175 -14.81751 -14.44983 -14.32339 -14.16681 -13.78662 -13.67770 -13.59860 -13.39098 -13.31701 -12.78277 -12.63702 -12.42526 -12.19783 -11.79947 -11.66573 -11.55968 -11.44263 -11.33194 -10.87625 -10.83604 -10.73454 -10.60234 -10.35974 -10.08456 -10.02453 -9.90191 -9.51188 -9.14444 -9.02645 -8.97955 -8.46552 -8.33950 -7.09167 -6.13706 -3.14827 0.04697 0.61063 1.63164 2.53520 2.81222 3.13749 3.47184 3.49618 3.67366 3.90419 4.05286 4.30805 4.53104 4.61044 4.61291 4.69651 4.77588 4.92982 5.10377 5.12252 5.19171 5.21798 5.27200 5.44170 5.51260 5.58470 5.61272 5.63208 5.66303 5.76602 5.86236 5.90840 5.92931 6.01898 6.11093 6.11773 6.13837 6.25965 6.27057 6.32345 6.38240 6.46334 6.56339 6.61048 6.71009 6.88906 6.94981 7.53976 7.67093 7.76773 8.16802 8.70551 9.16513 10.03253 10.18880 11.33868 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003446 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.153997 B = 8122.829639 C = 8927.674544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.323 4.323 5 H 0.065 0.935 6 C -0.043 4.043 7 N -0.944 5.944 8 Si 1.074 2.926 9 H -0.286 1.286 10 H -0.296 1.296 11 H -0.296 1.296 12 C -0.133 4.133 13 C 0.112 3.888 14 N -0.589 5.589 15 C 0.557 3.443 16 O -0.545 6.545 17 C -0.097 4.097 18 C -0.077 4.077 19 C -0.102 4.102 20 C -0.078 4.078 21 C 0.122 3.878 22 N -0.475 5.475 23 C 0.131 3.869 24 C -0.176 4.176 25 C -0.048 4.048 26 C -0.069 4.069 27 C 0.116 3.884 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -17.770 4.242 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.454 4.454 5 H 0.083 0.917 6 C -0.241 4.241 7 N -0.589 5.589 8 Si 0.906 3.094 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.223 1.223 12 C -0.173 4.173 13 C -0.010 4.010 14 N -0.320 5.320 15 C 0.345 3.655 16 O -0.425 6.425 17 C -0.101 4.101 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.097 4.097 21 C 0.001 3.999 22 N -0.183 5.183 23 C -0.042 4.042 24 C -0.196 4.196 25 C -0.073 4.073 26 C -0.072 4.072 27 C -0.006 4.006 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.505 -16.662 5.291 18.053 hybrid contribution -0.600 -1.129 -1.521 1.987 sum 3.905 -17.790 3.769 18.600 Atomic orbital electron populations 1.22193 0.97420 0.99007 1.02181 1.19463 0.92229 0.85722 0.91438 1.42514 1.61200 1.06657 1.26793 1.19903 1.29678 0.94405 1.01442 0.91746 1.25641 0.99056 0.95914 1.03467 1.70896 1.38873 1.37941 1.11218 0.83310 0.75398 0.76413 0.74317 1.21162 1.22401 1.22330 1.22276 0.94457 0.99121 1.01440 1.21878 0.95377 1.00022 0.83743 1.48084 1.41413 1.33789 1.08709 1.18167 0.79421 0.79635 0.88284 1.90764 1.61955 1.57032 1.32717 1.19899 1.01649 0.92998 0.95516 1.21488 0.95359 0.99849 0.92825 1.20872 0.99020 0.95893 0.96370 1.20938 0.97622 0.91875 0.99244 1.18794 0.97553 0.91153 0.92352 1.68042 1.16278 1.01079 1.32872 1.22966 0.91829 0.99160 0.90257 1.21938 1.02156 0.97130 0.98410 1.21641 0.94307 0.92717 0.98685 1.18554 0.99839 0.93083 0.95730 1.21608 0.94317 0.99163 0.85509 1.22108 0.94745 1.00632 0.99421 0.93227 0.94556 0.92426 0.79936 0.93458 0.90455 0.93374 0.90967 0.89167 0.84425 0.84345 0.84336 0.82288 0.84368 0.83874 0.89576 0.90678 0.91742 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.44 37.16 0.31 -2.27 16 2 C 0.20 3.63 0.74 -131.78 -0.10 3.53 16 3 N -0.73 -16.02 4.13 -47.20 -0.19 -16.22 16 4 C -0.32 -8.11 8.68 -15.06 -0.13 -8.24 16 5 H 0.06 1.61 6.70 -52.49 -0.35 1.26 16 6 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 7 N -0.94 -27.48 13.70 55.49 0.76 -26.72 16 8 Si 1.07 24.61 29.92 -169.99 -5.09 19.53 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 12 C -0.13 -2.21 4.70 -26.62 -0.13 -2.34 16 13 C 0.11 1.79 5.32 -3.73 -0.02 1.77 16 14 N -0.59 -9.39 2.97 -174.01 -0.52 -9.90 16 15 C 0.56 9.03 6.46 -12.46 -0.08 8.95 16 16 O -0.55 -10.05 15.14 5.29 0.08 -9.97 16 17 C -0.10 -1.39 4.63 -104.65 -0.48 -1.87 16 18 C -0.08 -0.95 7.77 -39.14 -0.30 -1.25 16 19 C -0.10 -1.06 9.92 -40.04 -0.40 -1.45 16 20 C -0.08 -0.87 9.96 -39.38 -0.39 -1.26 16 21 C 0.12 1.61 6.60 -84.88 -0.56 1.05 16 22 N -0.47 -5.93 10.34 -10.99 -0.11 -6.05 16 23 C 0.13 1.31 11.15 -17.47 -0.19 1.11 16 24 C -0.18 -1.77 10.04 -39.73 -0.40 -2.17 16 25 C -0.05 -0.61 9.29 -39.31 -0.37 -0.97 16 26 C -0.07 -0.97 5.76 -106.53 -0.61 -1.58 16 27 C 0.12 1.87 6.17 -3.71 -0.02 1.84 16 28 C -0.13 -2.04 4.96 -26.61 -0.13 -2.18 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.08 7.27 -51.93 -0.38 0.71 16 32 H 0.37 8.52 5.29 -40.82 -0.22 8.30 16 33 H 0.25 7.28 6.78 -40.82 -0.28 7.00 16 34 H 0.08 1.38 7.31 -51.93 -0.38 1.00 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.04 5.39 -51.93 -0.28 0.76 16 37 H 0.09 1.69 7.74 -51.93 -0.40 1.28 16 38 H 0.14 1.65 7.75 -52.49 -0.41 1.24 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 1.92 6.48 -52.48 -0.34 1.58 16 44 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 45 H 0.08 1.31 6.94 -51.93 -0.36 0.95 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -31.21 371.21 -9.93 -41.15 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.35 Total: 11.19 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -4.10 Total: -8.59 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.07 Total: -58.89 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.09 Total: 19.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.21 -9.93 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328006287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.807 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds