Wall clock time and date at job start Tue Mar 31 2020 22:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.45957 * 2 1 4 4 C 1.36940 * 120.00483 * 59.99419 * 3 2 1 5 5 H 1.07995 * 119.99358 * 0.02562 * 4 3 2 6 6 C 1.38805 * 120.00108 * 180.02562 * 4 3 2 7 7 N 1.31616 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99849 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46787 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46762 * 299.99983 * 8 6 4 11 11 H 1.48503 * 109.47049 * 59.99905 * 8 6 4 12 12 C 1.53045 * 109.45791 * 119.96839 * 2 1 3 13 13 C 1.53164 * 109.32778 * 181.38647 * 12 2 1 14 14 N 1.46924 * 108.76827 * 305.35873 * 13 12 2 15 15 C 1.34778 * 120.62949 * 233.63076 * 14 13 12 16 16 O 1.21590 * 119.99924 * 174.27632 * 15 14 13 17 17 C 1.47550 * 119.99894 * 354.27979 * 15 14 13 18 18 C 1.38697 * 120.38896 * 305.85465 * 17 15 14 19 19 C 1.38971 * 120.53630 * 179.67823 * 18 17 15 20 20 C 1.36207 * 121.23728 * 0.62997 * 19 18 17 21 21 C 1.40711 * 120.20277 * 359.67538 * 20 19 18 22 22 N 1.33690 * 120.95134 * 179.97438 * 21 20 19 23 23 C 1.31063 * 121.34248 * 180.02562 * 22 21 20 24 24 C 1.39344 * 121.71359 * 359.97438 * 23 22 21 25 25 C 1.36681 * 119.85950 * 359.97438 * 24 23 22 26 26 C 1.40467 * 118.16920 * 0.03590 * 25 24 23 27 27 C 1.46925 * 118.74060 * 53.60762 * 14 13 12 28 28 C 1.53038 * 109.46146 * 240.02091 * 2 1 3 29 29 H 1.09004 * 109.46962 * 60.00690 * 1 2 3 30 30 H 1.09006 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47466 * 300.00184 * 1 2 3 32 32 H 0.97002 * 119.99703 * 239.99645 * 3 2 1 33 33 H 0.97004 * 120.00269 * 0.02562 * 7 6 4 34 34 H 1.08997 * 109.49682 * 301.32523 * 12 2 1 35 35 H 1.09003 * 109.49589 * 61.42049 * 12 2 1 36 36 H 1.08990 * 109.58974 * 185.56998 * 13 12 2 37 37 H 1.09001 * 109.58611 * 65.13861 * 13 12 2 38 38 H 1.08002 * 119.73085 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.38132 * 180.28811 * 19 18 17 40 40 H 1.08001 * 119.90333 * 179.65882 * 20 19 18 41 41 H 1.08004 * 119.14548 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.06765 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.90754 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58851 * 186.61071 * 27 14 13 45 45 H 1.08999 * 109.58923 * 66.18126 * 27 14 13 46 46 H 1.08997 * 109.49839 * 298.58411 * 28 2 1 47 47 H 1.09003 * 109.49363 * 58.64572 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6870 2.2245 1.0269 5 1 1.0664 1.8711 1.8371 6 6 2.1490 3.5334 1.0266 7 7 2.9057 3.9640 0.0395 8 14 1.6980 4.6835 2.4279 9 1 2.3123 6.0149 2.1927 10 1 0.2213 4.8242 2.4968 11 1 2.2024 4.1253 3.7082 12 6 2.0398 -0.7208 1.2501 13 6 3.5710 -0.6889 1.2647 14 7 4.0676 -1.2493 0.0006 15 6 4.9610 -2.2584 0.0008 16 8 5.2856 -2.7832 -1.0469 17 6 5.5449 -2.7265 1.2724 18 6 6.1689 -1.8319 2.1292 19 6 6.7140 -2.2683 3.3308 20 6 6.6636 -3.5800 3.6943 21 6 6.0460 -4.5243 2.8535 22 7 5.9885 -5.8155 3.1952 23 6 5.4156 -6.7016 2.4178 24 6 4.8392 -6.3443 1.2005 25 6 4.8633 -5.0399 0.7929 26 6 5.4788 -4.0948 1.6302 27 6 3.5714 -0.6891 -1.2638 28 6 2.0399 -0.7210 -1.2499 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.1402 3.3667 -0.6880 34 1 1.6573 -0.2207 2.1398 35 1 1.6975 -1.7557 1.2384 36 1 3.9410 -1.2847 2.0989 37 1 3.9140 0.3406 1.3677 38 1 6.2266 -0.7868 1.8631 39 1 7.1915 -1.5549 3.9861 40 1 7.0991 -3.8964 4.6306 41 1 5.3896 -7.7356 2.7286 42 1 4.3738 -7.0964 0.5807 43 1 4.4221 -4.7443 -0.1475 44 1 3.9416 -1.2852 -2.0979 45 1 3.9145 0.3404 -1.3670 46 1 1.6976 -1.7558 -1.2381 47 1 1.6569 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328006287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:50 Heat of formation + Delta-G solvation = 20.950370 kcal Electronic energy + Delta-G solvation = -30063.690484 eV Core-core repulsion = 26210.831189 eV Total energy + Delta-G solvation = -3852.859295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26979 -41.09248 -39.38654 -37.98190 -36.26030 -34.61393 -34.35381 -32.45415 -31.63956 -31.19176 -30.52258 -29.16888 -26.03918 -25.59245 -24.88061 -24.68366 -24.27056 -23.30164 -21.19787 -20.05131 -19.37939 -18.91998 -18.32758 -18.05603 -17.67002 -16.94230 -16.78195 -16.19149 -15.90806 -15.68384 -15.41250 -15.33953 -15.26582 -15.09483 -14.93622 -14.54303 -14.25448 -14.15067 -13.84016 -13.74867 -13.27906 -13.10604 -12.84662 -12.80870 -12.73507 -12.59574 -12.42263 -12.27421 -12.20514 -11.91447 -11.78399 -11.64124 -11.50408 -11.22760 -10.96716 -10.83585 -10.51414 -9.86484 -9.78986 -9.34240 -8.99253 -8.24257 -5.18545 -0.86519 -0.25347 0.66868 1.44808 1.61960 1.70009 1.76689 1.85556 1.96606 2.76783 3.00756 3.20172 3.27207 3.51258 3.64109 3.66698 3.72379 3.78209 3.84461 3.87595 3.96008 4.05169 4.09726 4.16854 4.29604 4.36629 4.40357 4.52110 4.54793 4.66353 4.70267 4.72780 4.77009 4.89517 4.93073 4.95866 4.97241 5.02141 5.04843 5.18896 5.22727 5.23729 5.27039 5.45340 5.46663 5.54803 5.73471 5.76012 6.25029 6.62192 6.82066 6.89428 7.20685 8.11652 8.24282 9.27203 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003446 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.153997 B = 8122.829639 C = 8927.674544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.194 3.806 3 N -0.735 5.735 4 C -0.300 4.300 5 H 0.068 0.932 6 C -0.104 4.104 7 N -0.983 5.983 8 Si 1.116 2.884 9 H -0.302 1.302 10 H -0.284 1.284 11 H -0.277 1.277 12 C -0.127 4.127 13 C 0.124 3.876 14 N -0.588 5.588 15 C 0.560 3.440 16 O -0.573 6.573 17 C -0.123 4.123 18 C -0.076 4.076 19 C -0.099 4.099 20 C -0.073 4.073 21 C 0.103 3.897 22 N -0.491 5.491 23 C 0.132 3.868 24 C -0.160 4.160 25 C -0.076 4.076 26 C -0.085 4.085 27 C 0.119 3.881 28 C -0.121 4.121 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.358 0.642 33 H 0.243 0.757 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.136 0.864 39 H 0.170 0.830 40 H 0.161 0.839 41 H 0.200 0.800 42 H 0.172 0.828 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -20.378 6.069 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.104 3.896 3 N -0.377 5.377 4 C -0.432 4.432 5 H 0.085 0.915 6 C -0.296 4.296 7 N -0.632 5.632 8 Si 0.943 3.057 9 H -0.228 1.228 10 H -0.211 1.211 11 H -0.204 1.204 12 C -0.167 4.167 13 C 0.002 3.998 14 N -0.319 5.319 15 C 0.350 3.650 16 O -0.454 6.454 17 C -0.127 4.127 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.091 4.091 21 C -0.018 4.018 22 N -0.199 5.199 23 C -0.040 4.040 24 C -0.179 4.179 25 C -0.102 4.102 26 C -0.087 4.087 27 C -0.004 4.004 28 C -0.159 4.159 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.191 0.809 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.153 0.847 39 H 0.188 0.812 40 H 0.179 0.821 41 H 0.216 0.784 42 H 0.189 0.811 43 H 0.147 0.853 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.089 -19.318 7.136 20.996 hybrid contribution -0.484 -0.515 -2.097 2.212 sum 3.606 -19.833 5.039 20.778 Atomic orbital electron populations 1.22111 0.96526 1.00625 1.00914 1.19756 0.92754 0.83906 0.93155 1.42669 1.61102 1.08142 1.25824 1.20137 1.27281 0.94345 1.01408 0.91456 1.26763 0.99752 0.98098 1.04943 1.70993 1.41694 1.38179 1.12345 0.82745 0.75689 0.74225 0.73017 1.22834 1.21098 1.20364 1.22200 0.94624 0.99885 1.00030 1.21687 0.95044 0.98623 0.84468 1.48072 1.41537 1.33827 1.08449 1.18481 0.78740 0.79007 0.88795 1.90733 1.62759 1.57900 1.34006 1.19797 1.03696 0.93891 0.95297 1.21624 0.94963 0.99509 0.93357 1.21149 0.98511 0.96431 0.95780 1.21267 0.96536 0.91718 0.99604 1.19094 0.98176 0.92019 0.92475 1.68114 1.17100 1.01030 1.33644 1.23662 0.90204 1.00496 0.89686 1.22320 1.00522 0.96588 0.98491 1.21674 0.95826 0.94062 0.98599 1.18707 1.00531 0.92971 0.96520 1.21516 0.94793 0.98115 0.85948 1.22027 0.94093 1.01329 0.98441 0.94062 0.91504 0.94071 0.80920 0.94674 0.91558 0.91310 0.89176 0.92166 0.84654 0.81240 0.82122 0.78376 0.81094 0.85267 0.89325 0.92614 0.89863 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.44 71.98 0.61 -4.15 16 2 C 0.19 6.81 0.74 3.63 0.00 6.81 16 3 N -0.73 -32.79 4.13 -303.24 -1.25 -34.04 16 4 C -0.30 -15.14 8.68 84.03 0.73 -14.41 16 5 H 0.07 3.33 6.70 -2.91 -0.02 3.31 16 6 C -0.10 -5.69 5.50 84.86 0.47 -5.23 16 7 N -0.98 -58.95 13.70 21.65 0.30 -58.65 16 8 Si 1.12 49.98 29.92 68.60 2.05 52.04 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 12 C -0.13 -4.11 4.70 30.66 0.14 -3.97 16 13 C 0.12 3.97 5.32 86.35 0.46 4.43 16 14 N -0.59 -18.93 2.97 -822.71 -2.44 -21.38 16 15 C 0.56 18.42 6.46 86.70 0.56 18.98 16 16 O -0.57 -21.60 15.14 -4.00 -0.06 -21.66 16 17 C -0.12 -3.52 4.63 -19.88 -0.09 -3.61 16 18 C -0.08 -1.84 7.77 22.56 0.18 -1.67 16 19 C -0.10 -1.87 9.92 21.97 0.22 -1.66 16 20 C -0.07 -1.46 9.96 22.40 0.22 -1.23 16 21 C 0.10 2.54 6.60 40.27 0.27 2.80 16 22 N -0.49 -11.09 10.34 -188.68 -1.95 -13.04 16 23 C 0.13 2.23 11.15 85.07 0.95 3.18 16 24 C -0.16 -2.80 10.04 22.17 0.22 -2.58 16 25 C -0.08 -1.87 9.29 22.45 0.21 -1.67 16 26 C -0.08 -2.30 5.76 -21.10 -0.12 -2.42 16 27 C 0.12 3.88 6.17 86.36 0.53 4.42 16 28 C -0.12 -3.68 4.96 30.67 0.15 -3.53 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 32 H 0.36 17.24 5.29 -92.71 -0.49 16.74 16 33 H 0.24 14.51 6.78 -92.71 -0.63 13.88 16 34 H 0.07 2.30 7.31 -2.39 -0.02 2.28 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 2.56 5.39 -2.39 -0.01 2.55 16 37 H 0.06 2.31 7.74 -2.39 -0.02 2.29 16 38 H 0.14 3.26 7.75 -2.91 -0.02 3.24 16 39 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.13 3.50 6.48 -2.91 -0.02 3.48 16 44 H 0.09 2.86 7.00 -2.39 -0.02 2.84 16 45 H 0.06 2.04 6.94 -2.39 -0.02 2.02 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -69.19 371.21 2.99 -66.19 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.65 Total: 36.04 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.70 Total: -5.50 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.35 Total: -127.11 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.04 kcal Total: -69.19 2.99 -66.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328006287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.144 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds