Wall clock time and date at job start Tue Mar 31 2020 22:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39438 * 119.54125 * 2 1 4 4 C 1.35989 * 121.08522 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73556 * 359.97438 * 4 3 2 6 6 N 1.33276 * 120.98115 * 180.24970 * 5 4 3 7 7 C 1.31872 * 121.29650 * 180.26302 * 6 5 4 8 8 C 1.48288 * 119.24023 * 179.75581 * 7 6 5 9 9 O 1.21500 * 120.00074 * 179.72507 * 8 7 6 10 10 N 1.34780 * 119.99604 * 359.72776 * 8 7 6 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00336 * 20 18 16 23 23 H 1.48503 * 109.46916 * 239.99992 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 C 1.40275 * 121.52057 * 359.47387 * 7 6 5 26 26 C 1.36508 * 119.82346 * 0.25898 * 25 7 6 27 27 C 1.40759 * 118.23810 * 0.02562 * 26 25 7 28 28 C 1.36130 * 119.54350 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47245 * 89.99762 * 1 2 3 30 30 H 1.09008 * 109.46837 * 209.99902 * 1 2 3 31 31 H 1.09001 * 109.47247 * 329.99216 * 1 2 3 32 32 H 1.08003 * 119.45577 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.13765 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 35 35 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 36 36 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 37 37 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 38 38 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 39 39 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 40 40 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 41 41 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 42 42 H 0.97001 * 120.00336 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 44 44 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 45 45 H 1.08004 * 120.09227 * 180.23863 * 25 7 6 46 46 H 1.07998 * 120.88432 * 179.97438 * 26 25 7 47 47 H 1.07997 * 120.17643 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5539 1.2498 -0.0005 5 6 4.2850 0.0462 -0.0005 6 7 5.6178 0.0531 0.0040 7 6 6.3087 -1.0701 -0.0012 8 6 7.7903 -1.0091 -0.0014 9 8 8.4406 -2.0355 -0.0010 10 7 8.4156 0.1848 -0.0019 11 6 9.8793 0.2451 -0.0026 12 6 10.4784 0.6549 -1.3584 13 6 10.3675 2.1127 -0.8758 14 6 11.5670 2.9803 -1.2622 15 7 11.3479 3.5518 -2.5932 16 6 12.2942 4.3690 -3.1517 17 1 13.2018 4.5926 -2.6108 18 6 12.0868 4.9100 -4.4131 19 7 10.9805 4.6379 -5.0722 20 14 13.3780 6.0242 -5.1753 21 1 14.5200 6.1720 -4.2378 22 1 13.8562 5.4287 -6.4489 23 1 12.7837 7.3582 -5.4450 24 6 10.4419 1.5619 0.5580 25 6 5.6744 -2.3212 -0.0006 26 6 4.3111 -2.3913 0.0000 27 6 3.5824 -1.1870 -0.0005 28 6 2.1782 -1.1843 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5140 32 1 1.6382 2.1388 0.0004 33 1 4.0707 2.1980 -0.0009 34 1 7.8965 1.0042 -0.0025 35 1 10.3398 -0.6446 0.4271 36 1 11.5054 0.3192 -1.5014 37 1 9.8347 0.4250 -2.2075 38 1 9.4124 2.5804 -1.1149 39 1 11.6822 3.7850 -0.5359 40 1 12.4692 2.3689 -1.2732 41 1 10.5326 3.3512 -3.0789 42 1 10.8354 5.0162 -5.9535 43 1 9.7690 2.0631 1.2538 44 1 11.4585 1.4743 0.9412 45 1 6.2630 -3.2268 -0.0010 46 1 3.8050 -3.3453 0.0001 47 1 1.6337 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328885647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:27 Heat of formation + Delta-G solvation = 45.651862 kcal Electronic energy + Delta-G solvation = -27528.042492 eV Core-core repulsion = 23676.254333 eV Total energy + Delta-G solvation = -3851.788158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37212 -40.07424 -38.50974 -37.43344 -34.56474 -34.01927 -33.15381 -32.32953 -30.77853 -30.64057 -28.02465 -26.69327 -25.45884 -24.75254 -23.96955 -23.12572 -22.45840 -21.45865 -21.08093 -19.05438 -18.37620 -18.17849 -17.16680 -16.98852 -15.93057 -15.80870 -15.43150 -14.93129 -14.78497 -14.62650 -14.58529 -14.40932 -14.03290 -13.97957 -13.66639 -13.48856 -13.39986 -13.27138 -12.78650 -12.74323 -12.31818 -12.09010 -11.94697 -11.84394 -11.68279 -11.53224 -11.00389 -10.97389 -10.81852 -10.56409 -10.34082 -10.28993 -10.03555 -9.84776 -9.76146 -9.56839 -9.12858 -8.95426 -8.80675 -8.58661 -6.85543 -5.71848 -2.99840 -0.16538 0.31432 1.55825 2.11499 2.92398 2.98409 3.46058 3.51430 3.53890 3.72512 3.77700 4.13810 4.30598 4.32367 4.51419 4.60221 4.61811 4.71220 4.73191 4.86740 4.88157 5.04025 5.08167 5.13540 5.16645 5.19508 5.36534 5.41087 5.54825 5.62372 5.63691 5.69944 5.76993 5.88643 5.92392 5.98616 6.06502 6.06713 6.10632 6.16618 6.29209 6.35498 6.41274 6.47654 6.66136 6.83905 6.99197 7.24994 7.54745 7.74665 8.08308 8.47362 9.58278 10.18204 10.52555 11.51231 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.002138 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.096229 B =13090.714142 C =14656.836240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.103 4.103 4 C -0.078 4.078 5 C 0.120 3.880 6 N -0.439 5.439 7 C 0.116 3.884 8 C 0.571 3.429 9 O -0.532 6.532 10 N -0.686 5.686 11 C 0.113 3.887 12 C -0.138 4.138 13 C -0.113 4.113 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.065 4.065 27 C -0.082 4.082 28 C -0.107 4.107 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.412 0.588 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.131 -13.996 15.067 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.097 4.097 5 C -0.004 4.004 6 N -0.150 5.150 7 C -0.037 4.037 8 C 0.355 3.645 9 O -0.408 6.408 10 N -0.336 5.336 11 C 0.008 3.992 12 C -0.176 4.176 13 C -0.132 4.132 14 C 0.035 3.965 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.175 4.175 25 C -0.143 4.143 26 C -0.091 4.091 27 C -0.084 4.084 28 C -0.126 4.126 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.094 -13.766 15.064 29.349 hybrid contribution -0.267 0.248 -0.799 0.879 sum -21.361 -13.518 14.264 29.026 Atomic orbital electron populations 1.20877 0.90608 1.03194 1.02798 1.19792 0.96651 0.92983 0.97867 1.20862 0.93984 0.97969 0.99486 1.20926 0.93604 0.97051 0.98090 1.18832 0.88785 0.93027 0.99740 1.67812 1.07617 1.29818 1.09798 1.21339 0.94265 0.89641 0.98504 1.17878 0.85652 0.84094 0.76844 1.90780 1.65896 1.33949 1.50170 1.45546 1.07108 1.08534 1.72429 1.22027 0.79134 0.99384 0.98662 1.23443 1.01620 0.96219 0.96361 1.22796 1.00600 0.95332 0.94475 1.20637 0.93751 0.93776 0.88344 1.42363 1.22841 1.57212 1.15171 1.19298 0.98545 1.20297 0.98659 0.91177 1.24747 0.97702 1.01343 0.97452 1.69673 1.25757 1.48939 1.13922 0.86120 0.80769 0.80280 0.79069 1.20578 1.21920 1.21928 1.23300 1.01788 0.95081 0.97374 1.21746 0.95126 0.98865 0.98585 1.21451 0.93663 0.97830 0.96151 1.18953 0.94869 0.93963 1.00579 1.20833 0.92069 0.98385 1.01297 0.90659 0.91257 0.91105 0.84940 0.84066 0.75116 0.88153 0.88980 0.91267 0.89339 0.96388 0.96190 0.78324 0.93640 0.91150 0.88574 0.83115 0.83655 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.98 36.00 0.36 -0.12 16 2 C -0.07 -0.49 5.85 -104.93 -0.61 -1.10 16 3 C -0.10 -0.75 9.58 -39.94 -0.38 -1.13 16 4 C -0.08 -0.72 9.99 -39.41 -0.39 -1.12 16 5 C 0.12 1.34 6.61 -84.85 -0.56 0.78 16 6 N -0.44 -5.48 9.47 -7.53 -0.07 -5.55 16 7 C 0.12 1.47 6.75 -82.95 -0.56 0.91 16 8 C 0.57 8.12 7.81 -12.13 -0.09 8.02 16 9 O -0.53 -8.75 15.90 5.37 0.09 -8.67 16 10 N -0.69 -9.11 5.25 -53.82 -0.28 -9.39 16 11 C 0.11 1.52 4.30 -67.12 -0.29 1.23 16 12 C -0.14 -2.15 7.45 -25.82 -0.19 -2.34 16 13 C -0.11 -1.83 3.64 -89.71 -0.33 -2.16 16 14 C 0.16 3.31 6.10 -4.05 -0.02 3.28 16 15 N -0.73 -19.01 5.60 -59.91 -0.34 -19.35 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 19 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 20 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C -0.14 -1.74 7.38 -25.92 -0.19 -1.93 16 25 C -0.12 -1.28 9.54 -39.44 -0.38 -1.66 16 26 C -0.07 -0.55 9.88 -39.25 -0.39 -0.94 16 27 C -0.08 -0.77 5.75 -106.71 -0.61 -1.39 16 28 C -0.11 -0.77 9.37 -39.52 -0.37 -1.14 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.22 8.07 -51.92 -0.42 -0.20 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.41 5.15 8.01 -40.82 -0.33 4.82 16 35 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 36 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 41 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 42 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 45 H 0.15 1.43 7.60 -52.48 -0.40 1.03 16 46 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -34.36 395.48 -11.06 -45.42 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.86 Total: 10.25 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -5.26 Total: -8.34 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.03 Total: -62.46 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.36 -11.06 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328885647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.076 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds