Wall clock time and date at job start Tue Mar 31 2020 22:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39438 * 119.54125 * 2 1 4 4 C 1.35989 * 121.08522 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73556 * 359.97438 * 4 3 2 6 6 N 1.33276 * 120.98115 * 180.24970 * 5 4 3 7 7 C 1.31872 * 121.29650 * 180.26302 * 6 5 4 8 8 C 1.48288 * 119.24023 * 179.75581 * 7 6 5 9 9 O 1.21500 * 120.00074 * 179.72507 * 8 7 6 10 10 N 1.34780 * 119.99604 * 359.72776 * 8 7 6 11 11 C 1.46497 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 11 10 8 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 11 10 14 14 C 1.52994 * 113.66220 * 139.93548 * 13 12 11 15 15 N 1.46498 * 109.47402 * 87.44478 * 14 13 12 16 16 C 1.36937 * 120.00198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00336 * 20 18 16 23 23 H 1.48503 * 109.46916 * 239.99992 * 20 18 16 24 24 C 1.53781 * 113.61305 * 203.46742 * 11 10 8 25 25 C 1.40275 * 121.52057 * 359.47387 * 7 6 5 26 26 C 1.36508 * 119.82346 * 0.25898 * 25 7 6 27 27 C 1.40759 * 118.23810 * 0.02562 * 26 25 7 28 28 C 1.36130 * 119.54350 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47245 * 89.99762 * 1 2 3 30 30 H 1.09008 * 109.46837 * 209.99902 * 1 2 3 31 31 H 1.09001 * 109.47247 * 329.99216 * 1 2 3 32 32 H 1.08003 * 119.45577 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.13765 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00200 * 359.97438 * 10 8 7 35 35 H 1.09002 * 112.84935 * 334.66222 * 11 10 8 36 36 H 1.08993 * 113.61491 * 203.74894 * 12 11 10 37 37 H 1.09000 * 113.61138 * 334.65232 * 12 11 10 38 38 H 1.09002 * 113.61454 * 270.79954 * 13 12 11 39 39 H 1.09005 * 109.46709 * 207.43538 * 14 13 12 40 40 H 1.08998 * 109.47556 * 327.43829 * 14 13 12 41 41 H 0.97001 * 120.00130 * 359.97438 * 15 14 13 42 42 H 0.97001 * 120.00336 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.61695 * 25.34675 * 24 11 10 44 44 H 1.08996 * 113.61580 * 156.16953 * 24 11 10 45 45 H 1.08004 * 120.09227 * 180.23863 * 25 7 6 46 46 H 1.07998 * 120.88432 * 179.97438 * 26 25 7 47 47 H 1.07997 * 120.17643 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5539 1.2498 -0.0005 5 6 4.2850 0.0462 -0.0005 6 7 5.6178 0.0531 0.0040 7 6 6.3087 -1.0701 -0.0012 8 6 7.7903 -1.0091 -0.0014 9 8 8.4406 -2.0355 -0.0010 10 7 8.4156 0.1848 -0.0019 11 6 9.8793 0.2451 -0.0026 12 6 10.4784 0.6549 -1.3584 13 6 10.3675 2.1127 -0.8758 14 6 11.5670 2.9803 -1.2622 15 7 11.3479 3.5518 -2.5932 16 6 12.2942 4.3690 -3.1517 17 1 13.2018 4.5926 -2.6108 18 6 12.0868 4.9100 -4.4131 19 7 10.9805 4.6379 -5.0722 20 14 13.3780 6.0242 -5.1753 21 1 14.5200 6.1720 -4.2378 22 1 13.8562 5.4287 -6.4489 23 1 12.7837 7.3582 -5.4450 24 6 10.4419 1.5619 0.5580 25 6 5.6744 -2.3212 -0.0006 26 6 4.3111 -2.3913 0.0000 27 6 3.5824 -1.1870 -0.0005 28 6 2.1782 -1.1843 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5140 32 1 1.6382 2.1388 0.0004 33 1 4.0707 2.1980 -0.0009 34 1 7.8965 1.0042 -0.0025 35 1 10.3398 -0.6446 0.4271 36 1 11.5054 0.3192 -1.5014 37 1 9.8347 0.4250 -2.2075 38 1 9.4124 2.5804 -1.1149 39 1 11.6822 3.7850 -0.5359 40 1 12.4692 2.3689 -1.2732 41 1 10.5326 3.3512 -3.0789 42 1 10.8354 5.0162 -5.9535 43 1 9.7690 2.0631 1.2538 44 1 11.4585 1.4743 0.9412 45 1 6.2630 -3.2268 -0.0010 46 1 3.8050 -3.3453 0.0001 47 1 1.6337 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328885647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:26 Heat of formation + Delta-G solvation = 24.113304 kcal Electronic energy + Delta-G solvation = -27528.976473 eV Core-core repulsion = 23676.254333 eV Total energy + Delta-G solvation = -3852.722140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14782 -41.13992 -39.61146 -38.21971 -36.37030 -34.90646 -34.30229 -33.16482 -32.61842 -31.30477 -28.94539 -28.10321 -26.66180 -25.64390 -25.17717 -24.38671 -23.15739 -22.88963 -22.08382 -20.34490 -19.21253 -19.12466 -18.93303 -17.83123 -17.08443 -16.68222 -16.59723 -16.44125 -15.90717 -15.72427 -15.41132 -15.29154 -15.21746 -15.09766 -14.95690 -14.48856 -14.29691 -14.13704 -14.06112 -13.71508 -13.39972 -13.17712 -13.13172 -12.93657 -12.73840 -12.47504 -12.40729 -12.22739 -12.13056 -11.94193 -11.80812 -11.67045 -11.45622 -11.39010 -11.17843 -10.88339 -10.66676 -10.15779 -9.75993 -9.21562 -8.98688 -7.95559 -5.24205 -0.89574 -0.38482 0.86580 1.31200 1.46060 1.47377 1.57623 1.91771 2.12787 2.55497 2.89169 3.02338 3.37277 3.51448 3.55118 3.57829 3.62889 3.75401 3.82854 3.91014 3.93229 3.98955 4.15163 4.31124 4.31814 4.40242 4.53243 4.64833 4.71355 4.74923 4.82901 4.84426 4.88355 4.88940 4.91772 4.96646 5.00472 5.05085 5.13043 5.21023 5.24772 5.29980 5.33101 5.43074 5.48456 5.54757 5.61782 5.83376 6.26989 6.28630 6.62876 7.00980 7.32556 8.10595 8.32892 9.28472 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.002138 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.096229 B =13090.714142 C =14656.836240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.103 4.103 5 C 0.093 3.907 6 N -0.458 5.458 7 C 0.092 3.908 8 C 0.569 3.431 9 O -0.561 6.561 10 N -0.684 5.684 11 C 0.122 3.878 12 C -0.141 4.141 13 C -0.112 4.112 14 C 0.161 3.839 15 N -0.746 5.746 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.292 1.292 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.050 4.050 27 C -0.093 4.093 28 C -0.107 4.107 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.415 0.585 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.155 0.845 46 H 0.185 0.815 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.837 -14.415 16.370 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.031 4.031 6 N -0.170 5.170 7 C -0.061 4.061 8 C 0.355 3.645 9 O -0.439 6.439 10 N -0.333 5.333 11 C 0.017 3.983 12 C -0.179 4.179 13 C -0.131 4.131 14 C 0.035 3.965 15 N -0.388 5.388 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.075 4.075 27 C -0.095 4.095 28 C -0.126 4.126 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.174 0.826 33 H 0.157 0.843 34 H 0.253 0.747 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.133 0.867 45 H 0.172 0.828 46 H 0.202 0.798 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.783 -14.180 16.414 31.458 hybrid contribution 0.106 0.392 -1.173 1.241 sum -22.677 -13.788 15.241 30.605 Atomic orbital electron populations 1.20943 0.88292 1.04437 1.03621 1.20196 0.98306 0.92498 0.96307 1.21220 0.93277 0.99521 0.97407 1.21060 0.94633 0.96592 0.99882 1.19223 0.88539 0.94609 1.00742 1.67712 1.08682 1.30043 1.10533 1.21215 0.93325 0.90815 1.00734 1.18208 0.86574 0.83740 0.75992 1.90743 1.66763 1.34735 1.51678 1.45558 1.07073 1.08635 1.72076 1.21917 0.79285 1.00033 0.97098 1.23452 1.01492 0.96122 0.96881 1.22702 0.98383 0.94609 0.97411 1.20827 0.95649 0.94232 0.85842 1.42609 1.21949 1.57246 1.17025 1.19726 0.99016 1.19936 0.98856 0.90509 1.25623 0.99954 1.03460 0.98241 1.69837 1.27823 1.50509 1.14139 0.85035 0.78577 0.77918 0.78015 1.18880 1.22109 1.21941 1.23225 1.03211 0.93554 0.95273 1.21840 0.96230 0.98071 0.99801 1.21863 0.92783 0.99134 0.93749 1.19253 0.96154 0.93629 1.00497 1.21192 0.91047 1.00010 1.00320 0.89859 0.89875 0.90130 0.82607 0.84299 0.74744 0.87826 0.88886 0.93416 0.90336 0.95919 0.95761 0.79705 0.94072 0.89371 0.86748 0.82767 0.79815 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.98 71.23 0.71 0.18 16 2 C -0.07 -0.78 5.85 -20.07 -0.12 -0.90 16 3 C -0.09 -1.22 9.58 22.04 0.21 -1.01 16 4 C -0.10 -1.92 9.99 22.38 0.22 -1.69 16 5 C 0.09 2.10 6.61 40.47 0.27 2.36 16 6 N -0.46 -11.98 9.47 -177.75 -1.68 -13.67 16 7 C 0.09 2.43 6.75 42.31 0.29 2.71 16 8 C 0.57 16.91 7.81 86.92 0.68 17.58 16 9 O -0.56 -19.14 15.90 -3.72 -0.06 -19.20 16 10 N -0.68 -18.73 5.25 -442.48 -2.32 -21.06 16 11 C 0.12 3.27 4.30 45.52 0.20 3.47 16 12 C -0.14 -4.49 7.45 31.18 0.23 -4.26 16 13 C -0.11 -3.65 3.64 -10.21 -0.04 -3.69 16 14 C 0.16 6.52 6.10 86.38 0.53 7.05 16 15 N -0.75 -39.41 5.60 -343.46 -1.92 -41.33 16 16 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 19 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 20 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 21 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 C -0.11 -2.75 7.38 31.12 0.23 -2.52 16 25 C -0.14 -2.92 9.54 22.36 0.21 -2.71 16 26 C -0.05 -0.77 9.88 22.48 0.22 -0.55 16 27 C -0.09 -1.65 5.75 -21.22 -0.12 -1.77 16 28 C -0.11 -1.26 9.37 22.31 0.21 -1.05 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.19 8.07 -2.38 -0.02 0.17 16 31 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 32 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.42 10.81 8.01 -92.71 -0.74 10.06 16 35 H 0.10 2.79 7.50 -2.39 -0.02 2.77 16 36 H 0.09 2.93 7.90 -2.39 -0.02 2.91 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 41 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 42 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.11 2.40 8.10 -2.39 -0.02 2.38 16 45 H 0.15 3.00 7.60 -2.91 -0.02 2.98 16 46 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -76.09 395.48 1.10 -74.98 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.45 Total: 36.42 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.24 Total: -4.32 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -5.65 Total: -137.22 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -76.09 1.10 -74.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328885647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.096 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds