Wall clock time and date at job start Tue Mar 31 2020 23:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 N 1.46291 * 114.00140 * 2 1 4 4 C 1.46890 * 111.00396 * 116.04534 * 3 2 1 5 5 C 1.46906 * 111.00029 * 239.99859 * 3 2 1 6 6 C 1.52992 * 109.47341 * 174.99728 * 5 3 2 7 7 N 1.46506 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21363 * 120.00428 * 359.73058 * 8 7 6 10 10 C 1.49346 * 120.00023 * 180.02562 * 8 7 6 11 11 O 1.21386 * 119.99415 * 359.72870 * 10 8 7 12 12 N 1.34777 * 120.00052 * 179.73002 * 10 8 7 13 13 C 1.39925 * 119.99564 * 180.02562 * 12 10 8 14 14 C 1.40463 * 125.98615 * 359.71572 * 13 12 10 15 15 C 1.35210 * 107.86850 * 179.88944 * 14 13 12 16 16 C 1.50704 * 126.06075 * 180.15285 * 15 14 13 17 17 N 1.34987 * 107.87920 * 0.36572 * 15 14 13 18 18 C 1.46492 * 125.97441 * 179.73077 * 17 15 14 19 19 C 1.50706 * 109.47532 * 270.01787 * 18 17 15 20 20 H 1.08004 * 119.99218 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47527 * 89.99750 * 23 21 19 25 25 H 1.48495 * 109.46879 * 210.00135 * 23 21 19 26 26 H 1.48506 * 109.46841 * 329.99417 * 23 21 19 27 27 N 1.31273 * 125.97739 * 180.02562 * 13 12 10 28 28 H 1.08999 * 109.46925 * 300.00697 * 1 2 3 29 29 H 1.09001 * 109.46495 * 60.00020 * 1 2 3 30 30 H 1.08996 * 109.47446 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47855 * 183.95441 * 4 3 2 32 32 H 1.09006 * 109.47048 * 303.94776 * 4 3 2 33 33 H 1.08997 * 109.47506 * 63.95183 * 4 3 2 34 34 H 1.09004 * 109.46760 * 54.99823 * 5 3 2 35 35 H 1.08998 * 109.46860 * 295.00525 * 5 3 2 36 36 H 1.09004 * 109.47116 * 60.00313 * 6 5 3 37 37 H 1.08998 * 109.47794 * 300.00225 * 6 5 3 38 38 H 0.96998 * 119.99507 * 0.02562 * 7 6 5 39 39 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 40 40 H 1.07998 * 126.06084 * 0.02652 * 14 13 12 41 41 H 1.08997 * 109.47230 * 270.25196 * 16 15 14 42 42 H 1.09000 * 109.47408 * 30.25213 * 16 15 14 43 43 H 1.09003 * 109.46794 * 150.24910 * 16 15 14 44 44 H 1.08998 * 109.47231 * 30.01867 * 18 17 15 45 45 H 1.08999 * 109.47200 * 150.01786 * 18 17 15 46 46 H 0.97001 * 120.00495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.7884 1.5725 1.2320 5 6 2.8648 1.5384 -1.1877 6 6 3.3675 2.9831 -1.2170 7 7 4.2064 3.1843 -2.4012 8 6 4.7623 4.3893 -2.6363 9 8 4.5641 5.3091 -1.8697 10 6 5.6169 4.5946 -3.8437 11 8 5.8148 3.6748 -4.6107 12 7 6.1685 5.8011 -4.0817 13 6 6.9687 5.9935 -5.2133 14 6 7.2835 5.0210 -6.1766 15 6 8.0746 5.6001 -7.1077 16 6 8.6481 4.9264 -8.3277 17 7 8.2636 6.8874 -6.7483 18 6 9.0639 7.8754 -7.4759 19 6 10.4854 7.8366 -6.9768 20 1 10.7647 7.1446 -6.1960 21 6 11.4291 8.6841 -7.5169 22 7 11.0890 9.5263 -8.4681 23 14 13.1912 8.6354 -6.8988 24 1 13.9705 7.6588 -7.7013 25 1 13.7999 9.9833 -7.0319 26 1 13.2038 8.2254 -5.4715 27 7 7.5614 7.1132 -5.5574 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1612 2.5967 1.2379 32 1 2.1422 1.4162 2.0960 33 1 3.6287 0.8798 1.2768 34 1 2.2793 1.3392 -2.0853 35 1 3.7156 0.8582 -1.1506 36 1 3.9530 3.1823 -0.3194 37 1 2.5167 3.6633 -1.2542 38 1 4.3609 2.4505 -3.0163 39 1 6.0100 6.5362 -3.4690 40 1 6.9506 3.9936 -6.1751 41 1 9.6164 4.4911 -8.0810 42 1 7.9706 4.1401 -8.6609 43 1 8.7719 5.6606 -9.1237 44 1 9.0463 7.6441 -8.5409 45 1 8.6488 8.8701 -7.3133 46 1 11.7530 10.1224 -8.8484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330319132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:08 Heat of formation + Delta-G solvation = -1.211660 kcal Electronic energy + Delta-G solvation = -28194.782951 eV Core-core repulsion = 23930.113375 eV Total energy + Delta-G solvation = -4264.669576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52037 -41.59872 -39.81961 -38.63156 -36.97959 -36.30992 -35.34502 -34.52603 -33.08329 -32.66912 -30.27737 -28.82680 -27.91925 -27.66045 -26.86406 -25.49074 -24.50748 -22.53960 -22.31915 -21.40320 -20.92360 -19.26420 -18.78497 -18.42793 -17.91852 -17.45375 -17.39400 -16.96581 -16.75455 -16.43101 -16.26440 -16.22198 -15.97165 -15.61885 -15.20336 -14.88580 -14.75775 -14.50058 -14.31326 -14.05264 -13.82868 -13.73413 -13.57700 -13.31731 -13.15516 -13.11294 -12.99987 -12.69019 -12.65509 -12.60396 -12.24605 -12.18956 -12.17363 -11.58325 -11.43927 -11.04726 -10.83725 -10.72721 -10.42423 -9.85711 -9.66408 -9.23561 -8.33417 -6.50546 0.02249 0.74907 1.07616 1.38081 1.39319 1.42598 1.50964 1.70186 1.89363 2.23229 2.33950 2.58602 2.97203 3.21003 3.58108 3.80829 3.86379 4.01364 4.11486 4.32754 4.40602 4.45635 4.55040 4.64732 4.65402 4.69331 4.72328 4.75236 4.77372 4.85134 4.90629 4.92075 4.95303 4.97005 5.00335 5.08423 5.19856 5.53308 5.57237 5.78338 5.79631 5.81333 5.92692 6.12793 6.22643 6.52837 6.60943 6.74604 6.94245 7.20472 8.73005 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026950 B = 0.001694 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.697603 B =16524.661714 C =16879.264088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.283 6.283 3 N -0.372 5.372 4 C -0.001 4.001 5 C 0.034 3.966 6 C 0.127 3.873 7 N -0.680 5.680 8 C 0.530 3.470 9 O -0.532 6.532 10 C 0.517 3.483 11 O -0.506 6.506 12 N -0.599 5.599 13 C 0.266 3.734 14 C -0.292 4.292 15 C 0.090 3.910 16 C -0.083 4.083 17 N -0.338 5.338 18 C 0.273 3.727 19 C -0.554 4.554 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.277 1.277 27 N -0.353 5.353 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.424 0.576 39 H 0.429 0.571 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 -19.256 13.917 30.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.288 6.288 3 N -0.141 5.141 4 C -0.149 4.149 5 C -0.095 4.095 6 C 0.004 3.996 7 N -0.335 5.335 8 C 0.309 3.691 9 O -0.408 6.408 10 C 0.298 3.702 11 O -0.379 6.379 12 N -0.249 5.249 13 C 0.013 3.987 14 C -0.323 4.323 15 C -0.040 4.040 16 C -0.141 4.141 17 N -0.120 5.120 18 C 0.154 3.846 19 C -0.592 4.592 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.202 1.202 27 N -0.184 5.184 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.262 0.738 39 H 0.267 0.733 40 H 0.194 0.806 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.417 -17.715 14.066 29.170 hybrid contribution 1.291 -0.588 0.102 1.423 sum -17.125 -18.303 14.169 28.793 Atomic orbital electron populations 1.22800 0.79120 1.03022 1.00994 1.90682 1.22527 1.18550 1.97025 1.67470 1.34329 1.08707 1.03582 1.22933 0.97525 1.02675 0.91764 1.22434 0.97213 0.95125 0.94720 1.21429 0.94799 0.96207 0.87209 1.45448 1.48642 1.11889 1.27508 1.19314 0.80880 0.84032 0.84910 1.90814 1.60471 1.41836 1.47686 1.20313 0.80913 0.82028 0.86911 1.90699 1.58883 1.41041 1.47236 1.42098 1.46007 1.14054 1.22757 1.19184 0.95792 0.93447 0.90325 1.21469 1.11343 1.02188 0.97290 1.21811 0.97821 0.85058 0.99339 1.20502 1.01886 1.00331 0.91340 1.48851 1.36715 1.09801 1.16675 1.19298 0.88501 0.85821 0.90933 1.21434 0.93836 1.22047 1.21919 0.93160 1.25704 1.03439 0.93917 0.94629 1.69995 1.36561 1.22413 1.26552 0.85365 0.78550 0.78075 0.78550 1.18819 1.20019 1.20199 1.77250 1.16571 1.21914 1.02677 0.93319 0.93378 0.87632 0.87693 0.89878 0.94017 0.88364 0.92167 0.89732 0.89462 0.73779 0.73260 0.80602 0.89659 0.87163 0.91293 0.92618 0.95728 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.51 113.37 1.30 1.66 16 2 O -0.28 -4.28 10.96 -50.14 -0.55 -4.83 16 3 N -0.37 -4.70 5.14 -537.16 -2.76 -7.46 16 4 C 0.00 -0.01 9.77 127.69 1.25 1.24 16 5 C 0.03 0.35 5.63 86.30 0.49 0.84 16 6 C 0.13 1.47 5.47 86.38 0.47 1.94 16 7 N -0.68 -9.96 5.55 -464.52 -2.58 -12.54 16 8 C 0.53 11.52 7.89 87.24 0.69 12.21 16 9 O -0.53 -13.75 16.48 -3.29 -0.05 -13.81 16 10 C 0.52 13.96 7.85 87.24 0.69 14.65 16 11 O -0.51 -14.62 13.60 -3.36 -0.05 -14.67 16 12 N -0.60 -18.93 5.43 -308.89 -1.68 -20.61 16 13 C 0.27 10.62 8.10 133.40 1.08 11.70 16 14 C -0.29 -11.18 9.51 22.11 0.21 -10.97 16 15 C 0.09 3.63 6.92 41.38 0.29 3.91 16 16 C -0.08 -2.57 10.11 71.24 0.72 -1.85 16 17 N -0.34 -16.04 3.59 -338.46 -1.22 -17.25 16 18 C 0.27 14.26 5.99 85.64 0.51 14.77 16 19 C -0.55 -30.77 9.39 25.60 0.24 -30.53 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 21 C 0.02 1.32 5.46 84.65 0.46 1.78 16 22 N -0.92 -51.36 13.29 21.44 0.28 -51.08 16 23 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 N -0.35 -16.56 12.60 -54.54 -0.69 -17.24 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.77 6.33 -2.39 -0.02 0.75 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.95 6.42 -2.39 -0.02 0.94 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 5.02 7.94 -92.71 -0.74 4.28 16 39 H 0.43 12.40 8.29 -92.71 -0.77 11.63 16 40 H 0.18 6.10 5.91 -2.91 -0.02 6.08 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.07 2.22 7.07 -2.39 -0.02 2.21 16 44 H 0.06 2.85 7.04 -2.39 -0.02 2.83 16 45 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -70.15 395.78 0.67 -69.49 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.47 Total: 23.88 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 8.40 Total: 21.34 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -8.64 Total: -126.19 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.65 Total: -33.31 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.15 0.67 -69.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330319132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.276 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds