Wall clock time and date at job start Tue Mar 31 2020 23:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34675 * 126.58796 * 2 1 4 4 N 1.34128 * 108.01655 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.26095 * 0.02562 * 4 3 2 6 6 N 1.35046 * 108.69457 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.39446 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46903 * 265.00204 * 7 6 5 9 9 O 1.21279 * 120.00135 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99807 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99874 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47188 * 179.97438 * 11 10 8 13 13 H 1.09008 * 109.47322 * 64.99846 * 12 11 10 14 14 C 1.53003 * 109.47156 * 184.99745 * 12 11 10 15 15 O 1.42898 * 109.47147 * 55.00123 * 14 12 11 16 16 N 1.46900 * 109.47052 * 305.00032 * 12 11 10 17 17 C 1.46903 * 111.00128 * 155.00108 * 16 12 11 18 18 C 1.50700 * 109.47234 * 179.97438 * 17 16 12 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99781 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99459 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99361 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99691 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00409 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47089 * 90.00121 * 25 23 21 27 27 H 1.48504 * 109.47201 * 210.00082 * 25 23 21 28 28 H 1.48504 * 109.47079 * 330.00350 * 25 23 21 29 29 H 1.08995 * 109.46567 * 90.02493 * 1 2 3 30 30 H 1.09001 * 109.46840 * 210.02293 * 1 2 3 31 31 H 1.08997 * 109.47145 * 330.02800 * 1 2 3 32 32 H 1.08002 * 125.98988 * 359.71105 * 3 2 1 33 33 H 1.08000 * 125.64975 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47032 * 24.99522 * 7 6 5 35 35 H 1.08995 * 109.46975 * 145.00013 * 7 6 5 36 36 H 0.97003 * 120.00410 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47301 * 299.99604 * 11 10 8 38 38 H 1.08995 * 109.47265 * 59.99978 * 11 10 8 39 39 H 1.09006 * 109.46996 * 174.99691 * 14 12 11 40 40 H 1.08998 * 109.47399 * 294.99926 * 14 12 11 41 41 H 0.96693 * 114.00388 * 179.97438 * 15 14 12 42 42 H 1.00894 * 111.00226 * 31.04144 * 16 12 11 43 43 H 1.09007 * 109.46809 * 299.99939 * 17 16 12 44 44 H 1.09005 * 109.47222 * 59.99478 * 17 16 12 45 45 H 0.96995 * 120.00513 * 359.97438 * 20 18 17 46 46 H 0.96994 * 119.99979 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0814 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5969 -0.6507 0.0004 6 7 2.3230 -1.0989 -0.0009 7 6 1.8944 -2.4999 -0.0010 8 6 1.6307 -2.9444 -1.4167 9 8 1.7850 -2.1673 -2.3350 10 7 1.2223 -4.2050 -1.6621 11 6 0.9654 -4.6370 -3.0382 12 6 0.5179 -6.1001 -3.0384 13 1 -0.4399 -6.1872 -2.5251 14 6 0.3697 -6.5879 -4.4809 15 8 1.5922 -6.3659 -5.1868 16 7 1.5212 -6.9190 -2.3450 17 6 0.9175 -8.1435 -1.8024 18 6 1.9748 -8.9563 -1.1006 19 8 3.1185 -8.5549 -1.0563 20 7 1.6492 -10.1288 -0.5212 21 6 2.6109 -10.8680 0.1177 22 1 3.6295 -10.5110 0.1564 23 6 2.2753 -12.0771 0.7146 24 7 3.1973 -12.7860 1.3266 25 14 0.5138 -12.6950 0.6471 26 1 0.3276 -13.5277 -0.5682 27 1 0.2288 -13.5110 1.8547 28 1 -0.4153 -11.5375 0.6011 29 1 -0.3632 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 1.9864 2.1118 -0.0044 33 1 4.4820 -1.2696 0.0011 34 1 2.6783 -3.1197 0.4342 35 1 0.9826 -2.6009 0.5874 36 1 1.0985 -4.8265 -0.9276 37 1 0.1815 -4.0169 -3.4733 38 1 1.8771 -4.5362 -3.6269 39 1 0.1377 -7.6530 -4.4823 40 1 -0.4363 -6.0398 -4.9689 41 1 1.5709 -6.6524 -6.1101 42 1 1.9808 -6.3901 -1.6192 43 1 0.1326 -7.8784 -1.0940 44 1 0.4899 -8.7292 -2.6161 45 1 0.7344 -10.4494 -0.5556 46 1 2.9630 -13.6298 1.7436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331760079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:52 Heat of formation + Delta-G solvation = -74.914097 kcal Electronic energy + Delta-G solvation = -29060.215151 eV Core-core repulsion = 24792.349598 eV Total energy + Delta-G solvation = -4267.865554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.12066 -40.93475 -40.27241 -38.78097 -36.61991 -35.99708 -35.08445 -34.94528 -33.72534 -32.85436 -31.52869 -29.12226 -28.02881 -27.32985 -26.41169 -25.42261 -22.51481 -22.16655 -21.60788 -21.29423 -20.78735 -20.29648 -18.83566 -18.44478 -18.20050 -17.75218 -17.06420 -16.84809 -16.66527 -16.57447 -16.05612 -15.90441 -15.53755 -15.25213 -15.01253 -14.89005 -14.70914 -14.62398 -14.46934 -14.25873 -14.06046 -13.95045 -13.68181 -13.56551 -13.27479 -13.18130 -12.99539 -12.92875 -12.68396 -12.39247 -12.00735 -11.95933 -11.52770 -11.49684 -10.96560 -10.77431 -10.50140 -10.41922 -10.25987 -10.23176 -9.31319 -9.24418 -8.39628 -6.00802 0.94892 1.30785 1.37753 1.38558 1.46397 1.63701 1.97981 2.13638 2.22681 2.24776 2.67810 3.16996 3.32489 3.45204 3.52938 3.73661 3.78730 3.80934 3.87069 4.06434 4.08493 4.22451 4.26810 4.36848 4.43199 4.52337 4.52666 4.60493 4.69790 4.73373 4.78412 4.81454 4.99886 5.02733 5.22982 5.40558 5.54089 5.81159 5.91074 6.03977 6.12931 6.32300 6.33953 6.61297 6.90427 7.00762 7.06252 7.09768 7.42014 7.99265 8.78034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.002317 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.177605 B =12079.976302 C =13317.799082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.062 4.062 4 N -0.531 5.531 5 C 0.175 3.825 6 N -0.443 5.443 7 C 0.082 3.918 8 C 0.500 3.500 9 O -0.569 6.569 10 N -0.715 5.715 11 C 0.130 3.870 12 C 0.081 3.919 13 H 0.098 0.902 14 C 0.084 3.916 15 O -0.585 6.585 16 N -0.679 5.679 17 C 0.060 3.940 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.225 1.225 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.223 0.777 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.389 0.611 42 H 0.344 0.656 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.493 17.892 -5.136 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C -0.208 4.208 4 N -0.249 5.249 5 C -0.107 4.107 6 N -0.127 5.127 7 C -0.043 4.043 8 C 0.285 3.715 9 O -0.447 6.447 10 N -0.369 5.369 11 C 0.007 3.993 12 C -0.028 4.028 13 H 0.116 0.884 14 C 0.005 3.995 15 O -0.392 6.392 16 N -0.314 5.314 17 C -0.072 4.072 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.147 1.147 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.197 0.803 33 H 0.239 0.761 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.238 0.762 42 H 0.165 0.835 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.505 18.855 -5.648 25.687 hybrid contribution -1.203 -1.564 0.531 2.043 sum -17.708 17.291 -5.117 25.273 Atomic orbital electron populations 1.20312 0.84965 1.04877 1.02931 1.21740 0.95988 0.86441 1.08897 1.22399 0.88392 0.99665 1.10356 1.70200 1.23755 1.10176 1.20811 1.25364 0.88256 0.91744 1.05322 1.45018 1.07072 1.06313 1.54255 1.21993 1.07466 0.80449 0.94427 1.21129 0.76478 0.82066 0.91826 1.90788 1.52424 1.54166 1.47363 1.45876 1.68348 1.12447 1.10180 1.21338 1.01667 0.93843 0.82499 1.22029 0.94989 0.90224 0.95582 0.88432 1.22270 0.86468 0.99976 0.90778 1.86568 1.36943 1.86755 1.28940 1.59946 1.30211 1.06907 1.34356 1.21760 0.93704 0.92300 0.99428 1.21019 0.90417 0.82667 0.82311 1.90570 1.23837 1.71857 1.63639 1.42018 1.10389 1.19889 1.50911 1.18981 0.91901 1.02572 1.32169 0.92854 1.26159 1.04350 0.95620 0.95503 1.69816 1.36415 1.14951 1.36530 0.85350 0.77040 0.80037 0.78965 1.18484 1.20360 1.14747 0.91408 0.90092 0.88204 0.80348 0.76111 0.82881 0.82564 0.75036 0.89971 0.92590 0.92647 0.90743 0.76202 0.83491 0.89207 0.86952 0.77406 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.18 71.24 0.72 -0.14 16 2 C -0.02 -0.32 6.95 40.96 0.28 -0.03 16 3 C -0.06 -1.48 11.79 83.52 0.98 -0.49 16 4 N -0.53 -14.90 11.25 -200.30 -2.25 -17.16 16 5 C 0.18 4.06 12.56 180.26 2.26 6.32 16 6 N -0.44 -8.56 2.24 -518.60 -1.16 -9.72 16 7 C 0.08 0.98 6.42 85.63 0.55 1.53 16 8 C 0.50 9.32 7.90 87.66 0.69 10.01 16 9 O -0.57 -16.60 16.43 -3.03 -0.05 -16.65 16 10 N -0.71 -10.69 4.99 -463.07 -2.31 -13.00 16 11 C 0.13 2.35 5.20 86.38 0.45 2.80 16 12 C 0.08 1.27 2.60 44.92 0.12 1.39 16 13 H 0.10 0.88 7.80 -2.38 -0.02 0.86 16 14 C 0.08 1.25 6.80 71.98 0.49 1.74 16 15 O -0.58 -12.20 12.64 -148.98 -1.88 -14.08 16 16 N -0.68 -16.44 5.87 -495.54 -2.91 -19.35 16 17 C 0.06 1.46 5.96 85.56 0.51 1.97 16 18 C 0.45 18.26 7.82 87.66 0.69 18.95 16 19 O -0.61 -32.07 15.78 -3.07 -0.05 -32.12 16 20 N -0.59 -25.57 5.09 -306.98 -1.56 -27.13 16 21 C -0.33 -18.30 10.16 84.04 0.85 -17.45 16 22 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -55.06 13.96 21.66 0.30 -54.76 16 25 Si 0.97 36.42 27.74 68.60 1.90 38.32 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 27 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 28 H -0.22 -6.74 6.52 99.48 0.65 -6.09 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.62 7.33 -2.39 -0.02 0.60 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.22 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.15 1.13 8.13 -2.39 -0.02 1.11 16 35 H 0.16 0.73 7.36 -2.39 -0.02 0.71 16 36 H 0.41 4.21 7.37 -92.71 -0.68 3.52 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.46 7.39 -2.39 -0.02 1.45 16 39 H 0.06 0.79 7.35 -2.38 -0.02 0.77 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.39 4.82 9.12 -74.06 -0.68 4.14 16 42 H 0.34 8.78 6.41 -89.70 -0.58 8.20 16 43 H 0.09 1.46 8.06 -2.38 -0.02 1.44 16 44 H 0.11 2.29 7.36 -2.38 -0.02 2.27 16 45 H 0.39 13.57 5.76 -92.71 -0.53 13.04 16 46 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -95.00 390.38 -2.37 -97.37 By element: Atomic # 1 Polarization: 43.65 SS G_CDS: -1.47 Total: 42.18 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 9.07 Total: 26.11 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -9.90 Total: -141.12 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -1.98 Total: -62.85 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 1.90 Total: 38.32 kcal Total: -95.00 -2.37 -97.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331760079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.455 kcal (2) G-P(sol) polarization free energy of solvation -95.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds