Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38881 * 120.33573 * 2 1 4 4 C 1.38295 * 118.50843 * 180.02562 * 3 2 1 5 5 C 1.39142 * 119.09293 * 0.02562 * 4 3 2 6 6 N 1.39002 * 119.70202 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47298 * 179.97438 * 7 6 5 9 9 N 1.46494 * 109.47007 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00070 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99670 * 359.72336 * 10 9 8 12 12 C 1.50696 * 120.00133 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47213 * 179.97438 * 12 10 9 14 14 C 1.37631 * 120.12849 * 264.99808 * 13 12 10 15 15 C 1.38607 * 120.25177 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.49936 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.25087 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12580 * 84.72268 * 13 12 10 19 19 C 1.41400 * 120.24771 * 359.97438 * 18 13 12 20 20 H 1.07995 * 119.99722 * 333.90466 * 19 18 13 21 21 C 1.39946 * 119.99931 * 153.90049 * 19 18 13 22 22 N 1.30820 * 120.00181 * 343.71427 * 21 19 18 23 23 Si 1.86796 * 119.99648 * 163.70997 * 21 19 18 24 24 H 1.48496 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46988 * 120.00161 * 23 21 19 26 26 H 1.48503 * 109.47235 * 239.99907 * 23 21 19 27 27 N 1.32394 * 120.59303 * 0.27636 * 5 4 3 28 28 C 1.31976 * 121.61832 * 359.43703 * 27 5 4 29 29 H 1.08995 * 109.47055 * 89.99699 * 1 2 3 30 30 H 1.09001 * 109.47005 * 209.99803 * 1 2 3 31 31 H 1.08997 * 109.46899 * 329.99432 * 1 2 3 32 32 H 1.08000 * 120.74399 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.45574 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99854 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.08995 * 109.47345 * 300.00448 * 7 6 5 37 37 H 1.09007 * 109.46409 * 60.00359 * 8 7 6 38 38 H 1.08995 * 109.47540 * 300.00636 * 8 7 6 39 39 H 0.97006 * 120.00093 * 0.02562 * 9 8 7 40 40 H 1.09002 * 109.46827 * 299.99441 * 12 10 9 41 41 H 1.08998 * 109.47358 * 59.99449 * 12 10 9 42 42 H 1.08003 * 119.87633 * 0.02562 * 14 13 12 43 43 H 1.07998 * 119.75494 * 180.02562 * 15 14 13 44 44 H 1.08008 * 119.87895 * 179.97438 * 16 15 14 45 45 H 1.07994 * 120.12875 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00104 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.57473 * 180.28461 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1987 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2282 -0.0823 -0.0016 6 7 5.6169 -0.1414 -0.0016 7 6 6.4028 1.0950 0.0000 8 6 7.8938 0.7517 0.0003 9 7 8.6796 1.9881 0.0014 10 6 10.0261 1.9308 0.0012 11 8 10.5873 0.8557 0.0053 12 6 10.8344 3.2027 0.0029 13 6 12.3031 2.8645 0.0030 14 6 12.9992 2.8094 1.1890 15 6 14.3498 2.4981 1.1922 16 6 15.0152 2.2396 0.0035 17 6 14.3396 2.2901 -1.1942 18 6 12.9665 2.5984 -1.2088 19 6 12.2603 2.6458 -2.4329 20 1 11.1957 2.4651 -2.4493 21 6 12.9408 2.9271 -3.6229 22 7 14.1381 3.4529 -3.5832 23 14 12.1397 2.5517 -5.2680 24 1 10.7943 1.9654 -5.0412 25 1 12.0067 3.8062 -6.0516 26 1 12.9809 1.5857 -6.0193 27 7 3.5238 -1.2033 -0.0076 28 6 2.2041 -1.1913 -0.0017 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6862 2.1440 0.0004 33 1 4.1676 2.0676 -0.0001 34 1 6.0658 -1.0013 -0.0027 35 1 6.1639 1.6761 0.8909 36 1 6.1641 1.6785 -0.8891 37 1 8.1328 0.1705 -0.8903 38 1 8.1322 0.1684 0.8896 39 1 8.2307 2.8481 0.0021 40 1 10.5957 3.7860 -0.8864 41 1 10.5957 3.7838 0.8936 42 1 12.4909 3.0086 2.1209 43 1 14.8881 2.4567 2.1275 44 1 16.0679 1.9985 0.0176 45 1 14.8599 2.0887 -2.1189 46 1 14.6096 3.6482 -4.4080 47 1 1.6626 -2.1257 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342557830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = 12.030214 kcal Electronic energy + Delta-G solvation = -27329.575237 eV Core-core repulsion = 23476.329135 eV Total energy + Delta-G solvation = -3853.246102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51229 -39.31658 -37.48083 -36.73424 -34.45351 -33.61387 -33.17091 -31.83340 -31.43279 -29.47714 -29.12603 -26.90550 -25.90243 -24.94119 -24.17629 -22.70010 -21.61641 -20.93388 -20.60254 -19.33931 -18.02485 -17.20571 -17.08437 -16.30906 -15.92988 -15.70770 -15.33204 -15.29656 -14.77126 -14.61779 -14.42273 -14.26591 -14.21826 -13.51800 -13.46037 -13.26851 -13.07456 -13.03921 -12.72574 -12.58713 -12.07304 -12.05165 -11.83067 -11.70352 -11.56127 -11.16735 -11.02079 -10.98234 -10.67477 -10.38350 -10.29269 -9.98121 -9.66809 -9.47926 -9.37478 -9.24993 -9.15683 -8.83889 -7.89086 -7.30362 -7.28639 -6.73023 -4.33794 1.03773 1.18220 2.62463 2.80451 3.01734 3.07806 3.12604 3.26980 3.29057 3.65230 3.76289 3.93955 4.35820 4.47692 4.56995 4.66952 4.74593 4.81440 4.81817 4.91832 5.10229 5.25944 5.29719 5.43090 5.54641 5.59941 5.68663 5.74507 5.77354 5.81894 6.01645 6.06284 6.13640 6.29098 6.31593 6.42410 6.51977 6.62886 6.74235 6.80640 7.09415 7.28829 7.30579 7.43208 7.64405 7.81672 7.93453 7.94451 8.08092 8.14175 8.32238 8.65615 8.79709 8.92432 9.02402 10.21115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002061 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.162835 B =13583.295516 C =14880.264405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.207 4.207 3 C -0.033 4.033 4 C -0.236 4.236 5 C 0.402 3.598 6 N -0.722 5.722 7 C 0.119 3.881 8 C 0.111 3.889 9 N -0.744 5.744 10 C 0.516 3.484 11 O -0.517 6.517 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.081 4.081 15 C -0.239 4.239 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.128 3.872 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.903 3.097 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.272 1.272 27 N -0.543 5.543 28 C 0.150 3.850 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.279 0.721 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.695 -1.128 4.899 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.211 4.211 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.166 3.834 6 N -0.355 5.355 7 C -0.006 4.006 8 C -0.013 4.013 9 N -0.400 5.400 10 C 0.304 3.696 11 O -0.390 6.390 12 C -0.109 4.109 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.126 3.874 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.421 5.421 23 Si 0.727 3.273 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.197 1.197 27 N -0.259 5.259 28 C -0.008 4.008 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.090 0.910 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.505 -2.439 4.731 22.154 hybrid contribution -0.714 0.726 -0.825 1.310 sum -22.219 -1.713 3.906 22.624 Atomic orbital electron populations 1.20558 0.90544 1.02535 1.01988 1.20596 0.97334 0.94063 1.09152 1.21214 0.93216 0.98009 0.93475 1.21420 0.95386 0.97367 1.11913 1.18306 0.85102 0.89370 0.90627 1.44255 1.01606 1.09032 1.80589 1.21492 0.90328 0.86688 1.02107 1.21220 0.88285 0.88679 1.03166 1.45948 1.06840 1.08165 1.79012 1.21295 0.80843 0.92799 0.74689 1.90694 1.70373 1.31079 1.46887 1.20257 0.93869 0.93820 1.02939 1.19047 0.92454 1.12984 0.93958 1.20297 0.94214 1.00023 0.95401 1.20308 0.94884 1.14429 0.96249 1.20683 0.97495 1.00872 0.93493 1.21299 0.95482 1.04628 0.96387 1.17350 0.91802 0.86863 0.91406 1.19489 0.95822 1.42358 0.90888 0.90784 1.25881 0.94604 0.92393 1.01230 1.69824 1.12301 1.29997 1.29942 0.86354 0.80557 0.78909 0.81451 1.18564 1.20040 1.19720 1.67147 1.08743 1.29508 1.20546 1.22282 0.88299 0.97455 0.92792 0.91657 0.91705 0.91873 0.85122 0.85054 0.75613 0.91253 0.91149 0.90993 0.91150 0.76903 0.88475 0.90498 0.89763 0.89663 0.89583 0.86524 0.91023 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.03 36.01 0.36 -0.16 16 2 C -0.21 -1.67 5.90 -104.46 -0.62 -2.29 16 3 C -0.03 -0.27 9.85 -39.32 -0.39 -0.66 16 4 C -0.24 -2.19 9.33 -39.22 -0.37 -2.55 16 5 C 0.40 4.42 7.65 -155.02 -1.19 3.23 16 6 N -0.72 -7.23 5.73 -60.42 -0.35 -7.58 16 7 C 0.12 1.04 5.01 -4.04 -0.02 1.02 16 8 C 0.11 1.31 5.79 -4.04 -0.02 1.28 16 9 N -0.74 -9.77 5.56 -60.30 -0.33 -10.11 16 10 C 0.52 9.63 7.44 -10.99 -0.08 9.55 16 11 O -0.52 -12.15 16.03 5.56 0.09 -12.06 16 12 C -0.07 -1.30 5.18 -29.04 -0.15 -1.45 16 13 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 14 C -0.08 -1.86 9.66 -39.67 -0.38 -2.24 16 15 C -0.24 -5.58 10.05 -39.29 -0.39 -5.97 16 16 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 17 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 18 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 19 C -0.46 -11.91 8.14 -37.74 -0.31 -12.22 16 20 H 0.07 1.88 6.67 -52.49 -0.35 1.53 16 21 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 22 N -0.79 -20.48 10.96 55.55 0.61 -19.87 16 23 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 N -0.54 -6.34 10.39 -12.44 -0.13 -6.47 16 28 C 0.15 1.40 10.85 -17.57 -0.19 1.21 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.99 6.71 -52.49 -0.35 0.64 16 34 H 0.41 4.09 8.60 -40.82 -0.35 3.74 16 35 H 0.07 0.53 7.93 -51.92 -0.41 0.11 16 36 H 0.07 0.57 7.93 -51.93 -0.41 0.16 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 40 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 41 H 0.08 1.19 8.05 -51.93 -0.42 0.78 16 42 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 46 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 47 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -32.79 395.14 -11.50 -44.29 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.69 Total: 11.04 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -5.62 Total: -19.02 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.20 Total: -44.02 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.79 -11.50 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342557830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.324 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds