Wall clock time and date at job start Tue Mar 31 2020 22:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38881 * 120.33573 * 2 1 4 4 C 1.38295 * 118.50843 * 180.02562 * 3 2 1 5 5 C 1.39142 * 119.09293 * 0.02562 * 4 3 2 6 6 N 1.39002 * 119.70202 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47298 * 179.97438 * 7 6 5 9 9 N 1.46494 * 109.47007 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00070 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99670 * 359.72336 * 10 9 8 12 12 C 1.50696 * 120.00133 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47213 * 179.97438 * 12 10 9 14 14 C 1.37631 * 120.12849 * 264.99808 * 13 12 10 15 15 C 1.38607 * 120.25177 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.49936 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.25087 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12580 * 84.72268 * 13 12 10 19 19 C 1.41400 * 120.24771 * 359.97438 * 18 13 12 20 20 H 1.07995 * 119.99722 * 333.90466 * 19 18 13 21 21 C 1.39946 * 119.99931 * 153.90049 * 19 18 13 22 22 N 1.30820 * 120.00181 * 343.71427 * 21 19 18 23 23 Si 1.86796 * 119.99648 * 163.70997 * 21 19 18 24 24 H 1.48496 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46988 * 120.00161 * 23 21 19 26 26 H 1.48503 * 109.47235 * 239.99907 * 23 21 19 27 27 N 1.32394 * 120.59303 * 0.27636 * 5 4 3 28 28 C 1.31976 * 121.61832 * 359.43703 * 27 5 4 29 29 H 1.08995 * 109.47055 * 89.99699 * 1 2 3 30 30 H 1.09001 * 109.47005 * 209.99803 * 1 2 3 31 31 H 1.08997 * 109.46899 * 329.99432 * 1 2 3 32 32 H 1.08000 * 120.74399 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.45574 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99854 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.08995 * 109.47345 * 300.00448 * 7 6 5 37 37 H 1.09007 * 109.46409 * 60.00359 * 8 7 6 38 38 H 1.08995 * 109.47540 * 300.00636 * 8 7 6 39 39 H 0.97006 * 120.00093 * 0.02562 * 9 8 7 40 40 H 1.09002 * 109.46827 * 299.99441 * 12 10 9 41 41 H 1.08998 * 109.47358 * 59.99449 * 12 10 9 42 42 H 1.08003 * 119.87633 * 0.02562 * 14 13 12 43 43 H 1.07998 * 119.75494 * 180.02562 * 15 14 13 44 44 H 1.08008 * 119.87895 * 179.97438 * 16 15 14 45 45 H 1.07994 * 120.12875 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00104 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.57473 * 180.28461 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1987 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2282 -0.0823 -0.0016 6 7 5.6169 -0.1414 -0.0016 7 6 6.4028 1.0950 0.0000 8 6 7.8938 0.7517 0.0003 9 7 8.6796 1.9881 0.0014 10 6 10.0261 1.9308 0.0012 11 8 10.5873 0.8557 0.0053 12 6 10.8344 3.2027 0.0029 13 6 12.3031 2.8645 0.0030 14 6 12.9992 2.8094 1.1890 15 6 14.3498 2.4981 1.1922 16 6 15.0152 2.2396 0.0035 17 6 14.3396 2.2901 -1.1942 18 6 12.9665 2.5984 -1.2088 19 6 12.2603 2.6458 -2.4329 20 1 11.1957 2.4651 -2.4493 21 6 12.9408 2.9271 -3.6229 22 7 14.1381 3.4529 -3.5832 23 14 12.1397 2.5517 -5.2680 24 1 10.7943 1.9654 -5.0412 25 1 12.0067 3.8062 -6.0516 26 1 12.9809 1.5857 -6.0193 27 7 3.5238 -1.2033 -0.0076 28 6 2.2041 -1.1913 -0.0017 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6862 2.1440 0.0004 33 1 4.1676 2.0676 -0.0001 34 1 6.0658 -1.0013 -0.0027 35 1 6.1639 1.6761 0.8909 36 1 6.1641 1.6785 -0.8891 37 1 8.1328 0.1705 -0.8903 38 1 8.1322 0.1684 0.8896 39 1 8.2307 2.8481 0.0021 40 1 10.5957 3.7860 -0.8864 41 1 10.5957 3.7838 0.8936 42 1 12.4909 3.0086 2.1209 43 1 14.8881 2.4567 2.1275 44 1 16.0679 1.9985 0.0176 45 1 14.8599 2.0887 -2.1189 46 1 14.6096 3.6482 -4.4080 47 1 1.6626 -2.1257 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342557830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:08 Heat of formation + Delta-G solvation = -7.973115 kcal Electronic energy + Delta-G solvation = -27330.442646 eV Core-core repulsion = 23476.329135 eV Total energy + Delta-G solvation = -3854.113512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19798 -40.76970 -39.16567 -37.66155 -35.54055 -35.48492 -33.93683 -33.42014 -32.18729 -31.33980 -30.15623 -28.31209 -27.00662 -26.45303 -24.89505 -23.57264 -22.81439 -22.33201 -22.08915 -20.93607 -19.07820 -18.75024 -18.05084 -17.46223 -17.32233 -16.89128 -16.72772 -16.14309 -15.97259 -15.91339 -15.45994 -15.30544 -15.19948 -14.96775 -14.78004 -14.46144 -14.37433 -13.86551 -13.81331 -13.52201 -13.36774 -13.15589 -13.02955 -12.90986 -12.80859 -12.74419 -12.57368 -12.47665 -12.42051 -12.11413 -11.31125 -11.20066 -11.02943 -10.93946 -10.81788 -10.65755 -10.35694 -10.07309 -9.21658 -9.15433 -8.59091 -8.56937 -6.28605 0.37882 0.53248 0.99019 1.13649 1.35802 1.48665 1.52113 1.82157 1.85504 2.19460 2.66743 2.80526 2.97689 3.60549 3.77141 3.78187 4.00819 4.01058 4.16321 4.19147 4.26948 4.32562 4.34405 4.42415 4.48961 4.63706 4.72076 4.73834 4.82273 4.82650 4.86782 4.93884 4.99138 5.08806 5.16152 5.21265 5.22410 5.37784 5.45840 5.49951 5.56159 5.71990 5.78898 6.04859 6.05228 6.18001 6.22625 6.42765 6.53195 6.65275 6.76097 7.00057 7.12524 7.23924 7.43826 8.37473 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002061 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.162835 B =13583.295516 C =14880.264405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.205 4.205 3 C -0.039 4.039 4 C -0.242 4.242 5 C 0.378 3.622 6 N -0.728 5.728 7 C 0.133 3.867 8 C 0.116 3.884 9 N -0.719 5.719 10 C 0.518 3.482 11 O -0.575 6.575 12 C -0.069 4.069 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.243 4.243 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.094 3.906 19 C -0.480 4.480 20 H 0.073 0.927 21 C 0.035 3.965 22 N -0.827 5.827 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.272 1.272 27 N -0.574 5.574 28 C 0.130 3.870 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.403 0.597 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.285 0.715 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.596 0.231 5.610 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.210 4.210 3 C -0.064 4.064 4 C -0.267 4.267 5 C 0.143 3.857 6 N -0.362 5.362 7 C 0.009 3.991 8 C -0.009 4.009 9 N -0.375 5.375 10 C 0.306 3.694 11 O -0.453 6.453 12 C -0.108 4.108 13 C -0.190 4.190 14 C -0.109 4.109 15 C -0.262 4.262 16 C -0.137 4.137 17 C -0.213 4.213 18 C 0.092 3.908 19 C -0.510 4.510 20 H 0.091 0.909 21 C -0.180 4.180 22 N -0.453 5.453 23 Si 0.793 3.207 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.197 1.197 27 N -0.292 5.292 28 C -0.027 4.027 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.239 0.761 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.468 -1.032 5.456 25.090 hybrid contribution 0.131 0.297 -0.926 0.981 sum -24.337 -0.735 4.530 24.766 Atomic orbital electron populations 1.20608 0.88482 1.03596 1.02730 1.20949 0.98857 0.93650 1.07556 1.21611 0.93027 0.99193 0.92585 1.21675 0.96170 0.97267 1.11588 1.18563 0.85276 0.90037 0.91797 1.44281 1.01634 1.09128 1.81107 1.21388 0.87714 0.86474 1.03572 1.21199 0.90116 0.87683 1.01927 1.45610 1.05293 1.09908 1.76662 1.21174 0.82372 0.91690 0.74179 1.90679 1.71859 1.32774 1.49966 1.20285 0.91120 0.94396 1.04999 1.19572 0.95064 1.11047 0.93308 1.20752 0.94372 0.99261 0.96559 1.20725 0.95492 1.13162 0.96855 1.20947 0.98543 1.00753 0.93410 1.21303 0.96331 1.07188 0.96524 1.17764 0.92178 0.87860 0.93017 1.19635 0.95882 1.43749 0.91744 0.90930 1.26670 0.95094 0.91774 1.04425 1.69886 1.13560 1.30734 1.31142 0.85321 0.79258 0.79059 0.77063 1.18599 1.18446 1.19690 1.67106 1.09981 1.30483 1.21630 1.22685 0.87898 0.98940 0.93150 0.90951 0.90813 0.90710 0.82484 0.83371 0.76141 0.89295 0.89995 0.92921 0.91892 0.74388 0.88176 0.86494 0.86380 0.86753 0.87834 0.88652 0.90422 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.03 71.24 0.71 -0.06 16 2 C -0.21 -2.92 5.90 -19.76 -0.12 -3.04 16 3 C -0.04 -0.53 9.85 22.44 0.22 -0.31 16 4 C -0.24 -4.00 9.33 22.50 0.21 -3.79 16 5 C 0.38 7.99 7.65 133.07 1.02 9.01 16 6 N -0.73 -14.10 5.73 -345.06 -1.98 -16.07 16 7 C 0.13 2.07 5.01 86.38 0.43 2.50 16 8 C 0.12 2.61 5.79 86.38 0.50 3.11 16 9 N -0.72 -17.57 5.56 -463.07 -2.57 -20.14 16 10 C 0.52 18.85 7.44 87.66 0.65 19.50 16 11 O -0.57 -27.36 16.03 -3.02 -0.05 -27.41 16 12 C -0.07 -2.48 5.18 29.10 0.15 -2.33 16 13 C -0.19 -8.91 4.43 -19.41 -0.09 -8.99 16 14 C -0.09 -4.07 9.66 22.21 0.21 -3.85 16 15 C -0.24 -11.08 10.05 22.46 0.23 -10.85 16 16 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 17 C -0.19 -10.79 8.69 22.73 0.20 -10.59 16 18 C 0.09 5.14 5.56 -21.29 -0.12 5.02 16 19 C -0.48 -25.77 8.14 23.46 0.19 -25.58 16 20 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 21 C 0.03 1.77 5.16 85.26 0.44 2.21 16 22 N -0.83 -43.95 10.96 21.83 0.24 -43.71 16 23 Si 0.97 39.19 29.59 68.60 2.03 41.22 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 27 N -0.57 -13.27 10.39 -193.26 -2.01 -15.28 16 28 C 0.13 2.32 10.85 84.62 0.92 3.24 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.46 8.09 -2.39 -0.02 0.44 16 31 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 32 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.15 1.80 6.71 -2.91 -0.02 1.78 16 34 H 0.40 8.22 8.60 -92.70 -0.80 7.42 16 35 H 0.09 1.07 7.93 -2.38 -0.02 1.05 16 36 H 0.08 1.11 7.93 -2.39 -0.02 1.10 16 37 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.42 6.70 8.47 -92.70 -0.79 5.92 16 40 H 0.10 3.57 7.08 -2.39 -0.02 3.55 16 41 H 0.12 3.23 8.05 -2.39 -0.02 3.21 16 42 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 45 H 0.10 5.57 6.20 -2.91 -0.02 5.55 16 46 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 47 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.61 395.14 1.07 -73.53 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.58 Total: 38.29 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 5.99 Total: -30.44 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -6.32 Total: -95.20 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -74.61 1.07 -73.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342557830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.561 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds