Wall clock time and date at job start Tue Mar 31 2020 23:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99759 * 2 1 4 4 C 1.53005 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46867 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 3 7 7 N 1.46499 * 109.46840 * 294.99527 * 5 4 3 8 8 C 1.34778 * 119.99771 * 155.00060 * 7 5 4 9 9 O 1.21590 * 120.00051 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99734 * 180.02562 * 8 7 5 11 11 C 1.40198 * 119.99639 * 180.02562 * 10 8 7 12 12 C 1.40400 * 125.97167 * 359.71633 * 11 10 8 13 13 C 1.35245 * 107.86514 * 179.82847 * 12 11 10 14 14 C 1.50709 * 126.07350 * 180.13489 * 13 12 11 15 15 N 1.34968 * 107.86130 * 0.42987 * 13 12 11 16 16 C 1.46496 * 125.98022 * 179.70530 * 15 13 12 17 17 C 1.50693 * 109.47273 * 270.00107 * 16 15 13 18 18 H 1.08003 * 120.00193 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46731 * 59.99487 * 21 19 17 23 23 H 1.48493 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46908 * 299.99822 * 21 19 17 25 25 N 1.31205 * 125.97191 * 180.02562 * 11 10 8 26 26 C 1.50699 * 109.47083 * 174.99799 * 5 4 3 27 27 N 1.34773 * 120.00068 * 299.99925 * 26 5 4 28 28 O 1.21277 * 119.99833 * 119.99582 * 26 5 4 29 29 H 1.08999 * 109.46988 * 60.00453 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47300 * 299.99580 * 1 2 3 32 32 H 1.09000 * 109.47012 * 59.99952 * 3 2 1 33 33 H 1.09001 * 109.47209 * 299.99868 * 3 2 1 34 34 H 1.08990 * 109.47398 * 60.00182 * 4 3 2 35 35 H 1.09001 * 109.47099 * 299.99875 * 4 3 2 36 36 H 0.96998 * 120.00630 * 335.00662 * 7 5 4 37 37 H 0.96993 * 119.99965 * 0.02562 * 10 8 7 38 38 H 1.07998 * 126.06815 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.46676 * 270.34659 * 14 13 12 40 40 H 1.09002 * 109.46656 * 30.34344 * 14 13 12 41 41 H 1.08997 * 109.46698 * 150.34313 * 14 13 12 42 42 H 1.09000 * 109.47204 * 30.00088 * 16 15 13 43 43 H 1.09007 * 109.46982 * 149.99547 * 16 15 13 44 44 H 0.97006 * 120.00468 * 180.02562 * 20 19 17 45 45 H 0.96998 * 119.99906 * 359.97438 * 27 26 5 46 46 H 0.96997 * 120.00218 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7674 3.1536 0.8423 7 7 3.8227 3.2666 -1.2513 8 6 3.8021 4.6134 -1.2983 9 8 4.0621 5.2605 -0.3023 10 7 3.4933 5.2429 -2.4494 11 6 3.4724 6.6438 -2.4984 12 6 3.7455 7.5106 -1.4282 13 6 3.6245 8.7794 -1.8806 14 6 3.8319 10.0337 -1.0712 15 7 3.2786 8.7229 -3.1840 16 6 3.0386 9.8713 -4.0613 17 6 1.5833 10.2568 -3.9973 18 1 0.9047 9.7017 -3.3666 19 6 1.1177 11.3177 -4.7449 20 7 1.9437 11.9934 -5.5133 21 14 -0.6867 11.7952 -4.6662 22 1 -1.0427 12.1560 -3.2704 23 1 -0.9299 12.9593 -5.5554 24 1 -1.5215 10.6500 -5.1097 25 7 3.1887 7.3740 -3.5509 26 6 5.6552 2.4655 0.1232 27 7 6.1979 1.8670 1.2020 28 8 6.3718 2.9100 -0.7483 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6439 -0.8908 35 1 3.8575 0.6436 0.8891 36 1 3.6156 2.7504 -2.0460 37 1 3.2856 4.7266 -3.2438 38 1 4.0081 7.2164 -0.4227 39 1 2.8887 10.3300 -0.6123 40 1 4.5715 9.8456 -0.2929 41 1 4.1856 10.8323 -1.7232 42 1 3.6517 10.7117 -3.7357 43 1 3.2998 9.6066 -5.0859 44 1 1.6162 12.7401 -6.0390 45 1 5.6247 1.5118 1.8992 46 1 7.1617 1.7921 1.2815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364108476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:25 Heat of formation + Delta-G solvation = -33.299618 kcal Electronic energy + Delta-G solvation = -29196.149540 eV Core-core repulsion = 24930.088526 eV Total energy + Delta-G solvation = -4266.061014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93682 -40.26913 -39.02077 -38.34696 -35.72031 -34.69729 -34.02821 -33.35283 -32.03248 -31.20294 -30.63759 -27.95141 -26.58253 -26.29063 -25.97302 -23.21062 -22.69130 -21.96549 -20.63373 -19.88855 -19.60320 -18.10592 -17.83844 -17.44637 -16.65909 -16.51386 -16.42065 -16.13346 -15.58697 -15.48257 -15.21267 -14.93510 -14.59279 -14.37486 -14.26595 -14.01837 -13.92088 -13.51502 -12.94270 -12.44172 -12.38497 -12.32985 -12.23703 -12.16601 -11.82070 -11.63486 -11.58187 -11.35981 -11.09746 -10.79263 -10.57077 -10.39327 -10.22359 -10.13383 -10.00942 -9.96837 -9.64201 -9.52232 -9.29640 -8.61531 -7.86728 -7.36143 -6.22551 -4.30165 2.23571 2.33477 2.67454 2.98149 3.17872 3.24548 3.28322 3.32306 3.40109 3.61111 3.89633 4.24879 4.30807 4.35397 4.38850 4.52347 4.73509 4.86795 4.95712 5.00166 5.02460 5.10872 5.27762 5.32543 5.42068 5.48464 5.75106 5.93889 6.07441 6.15780 6.24590 6.47781 6.49944 6.58713 6.65801 6.66280 6.96528 7.00721 7.08967 7.14331 7.56049 7.69862 7.92071 7.94484 7.98039 8.11644 8.58499 8.71380 8.79291 9.35773 10.84580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002397 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.306054 B =11679.138381 C =13087.153053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.121 4.121 5 C 0.153 3.847 6 H 0.122 0.878 7 N -0.725 5.725 8 C 0.722 3.278 9 O -0.564 6.564 10 N -0.640 5.640 11 C 0.283 3.717 12 C -0.288 4.288 13 C 0.090 3.910 14 C -0.083 4.083 15 N -0.319 5.319 16 C 0.259 3.741 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.275 1.275 25 N -0.323 5.323 26 C 0.506 3.494 27 N -0.855 5.855 28 O -0.523 6.523 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.402 0.598 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.268 0.732 45 H 0.400 0.600 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -23.588 14.716 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.017 4.017 4 C -0.159 4.159 5 C 0.043 3.957 6 H 0.140 0.860 7 N -0.381 5.381 8 C 0.421 3.579 9 O -0.439 6.439 10 N -0.289 5.289 11 C 0.030 3.970 12 C -0.319 4.319 13 C -0.041 4.041 14 C -0.141 4.141 15 N -0.101 5.101 16 C 0.142 3.858 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 N -0.154 5.154 26 C 0.288 3.712 27 N -0.420 5.420 28 O -0.396 6.396 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.237 0.763 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.229 0.771 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.435 -22.546 13.497 26.390 hybrid contribution -1.047 -0.208 0.261 1.098 sum 1.388 -22.754 13.758 26.626 Atomic orbital electron populations 1.22766 0.80468 1.02885 1.00392 1.87831 1.20150 1.27694 1.95548 1.22509 0.92750 0.84946 1.01467 1.21729 0.94539 0.94365 1.05307 1.20581 0.91470 0.94099 0.89577 0.86038 1.44629 1.75614 1.04715 1.13190 1.15490 0.77752 0.81416 0.83234 1.90864 1.54645 1.64223 1.34167 1.41282 1.71972 1.03459 1.12234 1.18636 1.01971 0.82482 0.93945 1.21211 1.19976 0.89435 1.01272 1.21053 0.99973 0.96786 0.86307 1.20324 1.02485 0.92927 0.98402 1.48953 1.49147 1.04020 1.07972 1.19663 0.97829 0.78853 0.89502 1.21288 0.93233 1.15174 1.27673 0.91827 1.24926 0.98613 0.95658 0.94597 1.69909 1.35216 1.20574 1.27320 0.86416 0.84062 0.78010 0.78189 1.19953 1.20979 1.20024 1.77248 1.29001 0.88300 1.20823 1.21050 0.91350 0.76977 0.81801 1.43840 1.11691 1.62619 1.23858 1.90795 1.62648 1.46089 1.40118 0.93772 0.89501 0.93849 0.92546 0.92465 0.89523 0.88744 0.76321 0.75877 0.82293 0.90484 0.90869 0.90901 0.92826 0.93053 0.92225 0.77116 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.95 10.70 -35.23 -0.38 -3.32 16 3 C 0.06 0.37 5.83 37.16 0.22 0.59 16 4 C -0.12 -0.63 5.07 -26.73 -0.14 -0.77 16 5 C 0.15 1.26 2.38 -69.08 -0.16 1.09 16 6 H 0.12 1.01 7.58 -51.93 -0.39 0.62 16 7 N -0.73 -7.50 4.06 -59.81 -0.24 -7.74 16 8 C 0.72 11.06 8.36 -86.91 -0.73 10.33 16 9 O -0.56 -10.41 13.13 5.29 0.07 -10.34 16 10 N -0.64 -10.48 5.46 -15.50 -0.08 -10.56 16 11 C 0.28 6.00 8.11 -154.36 -1.25 4.74 16 12 C -0.29 -6.17 9.52 -39.83 -0.38 -6.55 16 13 C 0.09 1.96 6.93 -82.27 -0.57 1.39 16 14 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 15 N -0.32 -7.76 3.59 -58.33 -0.21 -7.97 16 16 C 0.26 6.78 5.99 -5.20 -0.03 6.75 16 17 C -0.54 -14.91 9.39 -34.44 -0.32 -15.23 16 18 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 21 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 N -0.32 -7.68 12.59 31.44 0.40 -7.28 16 26 C 0.51 5.13 7.46 -10.99 -0.08 5.05 16 27 N -0.85 -4.82 8.73 31.22 0.27 -4.55 16 28 O -0.52 -8.07 17.16 5.56 0.10 -7.97 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.31 7.43 -51.93 -0.39 -0.07 16 36 H 0.40 3.12 8.62 -40.82 -0.35 2.77 16 37 H 0.41 5.36 8.84 -40.82 -0.36 5.00 16 38 H 0.16 3.35 5.91 -52.49 -0.31 3.04 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.29 7.07 -51.93 -0.37 0.93 16 42 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 43 H 0.05 1.43 8.14 -51.92 -0.42 1.01 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.40 0.91 8.19 -40.82 -0.33 0.57 16 46 H 0.40 2.06 8.93 -40.82 -0.36 1.70 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -38.06 393.78 -7.06 -45.12 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.56 Total: 7.78 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.07 Total: 9.28 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.87 Total: -62.69 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.21 Total: -21.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.06 -7.06 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364108476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.820 kcal (2) G-P(sol) polarization free energy of solvation -38.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds