Wall clock time and date at job start Tue Mar 31 2020 23:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99759 * 2 1 4 4 C 1.53005 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46867 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 3 7 7 N 1.46499 * 109.46840 * 294.99527 * 5 4 3 8 8 C 1.34778 * 119.99771 * 155.00060 * 7 5 4 9 9 O 1.21590 * 120.00051 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99734 * 180.02562 * 8 7 5 11 11 C 1.40198 * 119.99639 * 180.02562 * 10 8 7 12 12 C 1.40400 * 125.97167 * 359.71633 * 11 10 8 13 13 C 1.35245 * 107.86514 * 179.82847 * 12 11 10 14 14 C 1.50709 * 126.07350 * 180.13489 * 13 12 11 15 15 N 1.34968 * 107.86130 * 0.42987 * 13 12 11 16 16 C 1.46496 * 125.98022 * 179.70530 * 15 13 12 17 17 C 1.50693 * 109.47273 * 270.00107 * 16 15 13 18 18 H 1.08003 * 120.00193 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99875 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46731 * 59.99487 * 21 19 17 23 23 H 1.48493 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46908 * 299.99822 * 21 19 17 25 25 N 1.31205 * 125.97191 * 180.02562 * 11 10 8 26 26 C 1.50699 * 109.47083 * 174.99799 * 5 4 3 27 27 N 1.34773 * 120.00068 * 299.99925 * 26 5 4 28 28 O 1.21277 * 119.99833 * 119.99582 * 26 5 4 29 29 H 1.08999 * 109.46988 * 60.00453 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47300 * 299.99580 * 1 2 3 32 32 H 1.09000 * 109.47012 * 59.99952 * 3 2 1 33 33 H 1.09001 * 109.47209 * 299.99868 * 3 2 1 34 34 H 1.08990 * 109.47398 * 60.00182 * 4 3 2 35 35 H 1.09001 * 109.47099 * 299.99875 * 4 3 2 36 36 H 0.96998 * 120.00630 * 335.00662 * 7 5 4 37 37 H 0.96993 * 119.99965 * 0.02562 * 10 8 7 38 38 H 1.07998 * 126.06815 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.46676 * 270.34659 * 14 13 12 40 40 H 1.09002 * 109.46656 * 30.34344 * 14 13 12 41 41 H 1.08997 * 109.46698 * 150.34313 * 14 13 12 42 42 H 1.09000 * 109.47204 * 30.00088 * 16 15 13 43 43 H 1.09007 * 109.46982 * 149.99547 * 16 15 13 44 44 H 0.97006 * 120.00468 * 180.02562 * 20 19 17 45 45 H 0.96998 * 119.99906 * 359.97438 * 27 26 5 46 46 H 0.96997 * 120.00218 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7674 3.1536 0.8423 7 7 3.8227 3.2666 -1.2513 8 6 3.8021 4.6134 -1.2983 9 8 4.0621 5.2605 -0.3023 10 7 3.4933 5.2429 -2.4494 11 6 3.4724 6.6438 -2.4984 12 6 3.7455 7.5106 -1.4282 13 6 3.6245 8.7794 -1.8806 14 6 3.8319 10.0337 -1.0712 15 7 3.2786 8.7229 -3.1840 16 6 3.0386 9.8713 -4.0613 17 6 1.5833 10.2568 -3.9973 18 1 0.9047 9.7017 -3.3666 19 6 1.1177 11.3177 -4.7449 20 7 1.9437 11.9934 -5.5133 21 14 -0.6867 11.7952 -4.6662 22 1 -1.0427 12.1560 -3.2704 23 1 -0.9299 12.9593 -5.5554 24 1 -1.5215 10.6500 -5.1097 25 7 3.1887 7.3740 -3.5509 26 6 5.6552 2.4655 0.1232 27 7 6.1979 1.8670 1.2020 28 8 6.3718 2.9100 -0.7483 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6439 -0.8908 35 1 3.8575 0.6436 0.8891 36 1 3.6156 2.7504 -2.0460 37 1 3.2856 4.7266 -3.2438 38 1 4.0081 7.2164 -0.4227 39 1 2.8887 10.3300 -0.6123 40 1 4.5715 9.8456 -0.2929 41 1 4.1856 10.8323 -1.7232 42 1 3.6517 10.7117 -3.7357 43 1 3.2998 9.6066 -5.0859 44 1 1.6162 12.7401 -6.0390 45 1 5.6247 1.5118 1.8992 46 1 7.1617 1.7921 1.2815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364108476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:24 Heat of formation + Delta-G solvation = -64.571648 kcal Electronic energy + Delta-G solvation = -29197.505597 eV Core-core repulsion = 24930.088526 eV Total energy + Delta-G solvation = -4267.417071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35438 -41.47938 -40.13347 -38.87272 -36.69736 -36.12911 -35.31504 -34.75523 -33.25207 -32.67809 -32.14157 -28.83227 -28.22251 -27.84757 -26.58617 -25.05540 -23.34922 -23.23032 -21.50643 -21.30093 -21.12496 -19.20321 -18.80595 -18.72568 -18.19093 -17.62611 -17.17167 -17.00258 -16.88875 -16.56078 -16.30062 -16.16123 -15.89696 -15.69298 -15.39460 -15.33255 -14.75769 -14.69201 -14.31964 -14.05118 -13.79789 -13.70008 -13.51444 -13.14111 -12.97696 -12.85606 -12.79605 -12.64943 -12.29090 -12.22060 -12.13137 -12.06068 -11.58295 -11.45516 -11.35636 -11.17632 -10.72426 -10.65059 -10.60942 -10.25544 -9.56373 -9.08304 -8.31312 -6.49407 0.98426 1.08249 1.38776 1.40719 1.49528 1.56103 1.64111 2.02366 2.30120 2.36099 2.54777 2.86515 2.98017 3.09823 3.76608 3.84425 3.89318 3.99019 4.17121 4.20742 4.34511 4.44616 4.53458 4.55903 4.58545 4.72683 4.77388 4.84079 4.90125 4.90480 4.97392 5.00660 5.01337 5.11317 5.19454 5.33189 5.54630 5.79654 5.82341 5.90809 5.96627 6.20026 6.27999 6.44345 6.61584 6.69365 7.10738 7.21373 7.32732 7.38242 8.74373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002397 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.306054 B =11679.138381 C =13087.153053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.057 3.943 4 C -0.108 4.108 5 C 0.154 3.846 6 H 0.126 0.874 7 N -0.706 5.706 8 C 0.719 3.281 9 O -0.595 6.595 10 N -0.635 5.635 11 C 0.292 3.708 12 C -0.296 4.296 13 C 0.087 3.913 14 C -0.081 4.081 15 N -0.344 5.344 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.051 0.949 19 C 0.022 3.978 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.275 1.275 25 N -0.360 5.360 26 C 0.502 3.498 27 N -0.831 5.831 28 O -0.583 6.583 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.416 0.584 37 H 0.420 0.580 38 H 0.166 0.834 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.274 0.726 45 H 0.420 0.580 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -25.044 16.538 30.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.019 4.019 4 C -0.146 4.146 5 C 0.045 3.955 6 H 0.143 0.857 7 N -0.363 5.363 8 C 0.419 3.581 9 O -0.473 6.473 10 N -0.286 5.286 11 C 0.037 3.963 12 C -0.327 4.327 13 C -0.044 4.044 14 C -0.139 4.139 15 N -0.126 5.126 16 C 0.157 3.843 17 C -0.591 4.591 18 H 0.069 0.931 19 C -0.179 4.179 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.200 1.200 25 N -0.191 5.191 26 C 0.285 3.715 27 N -0.396 5.396 28 O -0.462 6.462 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.252 0.748 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.515 -24.104 15.374 28.630 hybrid contribution -0.705 0.081 -0.203 0.739 sum 0.810 -24.023 15.171 28.424 Atomic orbital electron populations 1.22903 0.79680 1.03793 1.00687 1.87797 1.21106 1.28206 1.95630 1.22550 0.93157 0.84681 1.01545 1.21666 0.93795 0.92330 1.06793 1.20799 0.90724 0.95527 0.88499 0.85667 1.44550 1.74011 1.02947 1.14772 1.15684 0.77354 0.82749 0.82322 1.90825 1.56012 1.65371 1.35068 1.41313 1.72025 1.01772 1.13517 1.18938 0.99813 0.84402 0.93149 1.21381 1.20351 0.89438 1.01572 1.21744 0.98516 0.98546 0.85564 1.20462 1.03844 0.91012 0.98564 1.48766 1.51200 1.03877 1.08772 1.19238 0.97143 0.79491 0.88461 1.21409 0.93870 1.15681 1.28132 0.93115 1.25754 1.03039 0.95269 0.93839 1.69999 1.37182 1.20898 1.27648 0.85396 0.78469 0.77807 0.78758 1.18919 1.19795 1.20021 1.77168 1.31170 0.88431 1.22282 1.21332 0.91767 0.76481 0.81905 1.43660 1.12420 1.60621 1.22896 1.90778 1.63914 1.49057 1.42466 0.93827 0.88395 0.93220 0.91970 0.93026 0.89221 0.86072 0.74700 0.74242 0.81656 0.89649 0.87714 0.91318 0.93062 0.95904 0.91741 0.74833 0.76025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -5.25 10.70 -148.98 -1.59 -6.85 16 3 C 0.06 0.59 5.83 71.98 0.42 1.01 16 4 C -0.11 -0.84 5.07 30.60 0.16 -0.68 16 5 C 0.15 2.24 2.38 44.25 0.11 2.35 16 6 H 0.13 1.82 7.58 -2.39 -0.02 1.80 16 7 N -0.71 -13.76 4.06 -461.40 -1.88 -15.64 16 8 C 0.72 21.60 8.36 179.05 1.50 23.10 16 9 O -0.60 -21.66 13.13 -4.00 -0.05 -21.72 16 10 N -0.63 -20.68 5.46 -321.22 -1.75 -22.44 16 11 C 0.29 12.50 8.11 133.31 1.08 13.58 16 12 C -0.30 -12.73 9.52 22.11 0.21 -12.52 16 13 C 0.09 3.80 6.93 41.39 0.29 4.09 16 14 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 15 N -0.34 -17.22 3.59 -338.44 -1.22 -18.43 16 16 C 0.28 14.94 5.99 85.63 0.51 15.45 16 17 C -0.55 -31.41 9.39 25.60 0.24 -31.17 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 19 C 0.02 1.21 5.46 84.66 0.46 1.67 16 20 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 21 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 N -0.36 -17.56 12.59 -54.44 -0.69 -18.24 16 26 C 0.50 9.43 7.46 87.66 0.65 10.09 16 27 N -0.83 -7.46 8.73 -173.54 -1.52 -8.98 16 28 O -0.58 -17.81 17.16 -3.02 -0.05 -17.86 16 29 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.12 0.34 7.43 -2.39 -0.02 0.32 16 36 H 0.42 5.87 8.62 -92.71 -0.80 5.07 16 37 H 0.42 10.98 8.84 -92.71 -0.82 10.16 16 38 H 0.17 6.90 5.91 -2.91 -0.02 6.88 16 39 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.07 2.43 7.07 -2.39 -0.02 2.41 16 42 H 0.05 2.75 7.04 -2.39 -0.02 2.74 16 43 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 45 H 0.42 0.55 8.19 -92.71 -0.76 -0.21 16 46 H 0.41 3.36 8.93 -92.71 -0.83 2.53 16 Total: -1.00 -83.99 393.78 -0.98 -84.97 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -2.14 Total: 25.78 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 7.59 Total: 26.37 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -6.76 Total: -136.01 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.70 Total: -46.42 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -83.99 -0.98 -84.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364108476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds