Wall clock time and date at job start Tue Mar 31 2020 22:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38603 * 119.54972 * 2 1 4 4 C 1.38587 * 119.34759 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.28013 * 4 3 2 6 6 C 1.39264 * 119.06364 * 359.45280 * 5 4 3 7 7 C 1.48165 * 119.72722 * 180.25557 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.29946 * 7 6 5 9 9 N 1.34780 * 120.00496 * 180.30043 * 7 6 5 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99730 * 269.72639 * 11 10 9 13 13 C 1.38235 * 120.00188 * 179.76323 * 12 11 10 14 14 C 1.38237 * 119.99773 * 0.48807 * 13 12 11 15 15 C 1.50695 * 120.00362 * 179.76412 * 14 13 12 16 16 C 1.52998 * 109.47182 * 270.02217 * 15 14 13 17 17 N 1.46506 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.36933 * 120.00204 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00170 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00151 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47351 * 120.00200 * 22 20 18 25 25 H 1.48508 * 109.47022 * 240.00086 * 22 20 18 26 26 C 1.38238 * 119.99911 * 359.78977 * 14 13 12 27 27 C 1.38233 * 120.00078 * 89.99648 * 11 10 9 28 28 N 1.31492 * 119.54650 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47153 * 89.99424 * 1 2 3 30 30 H 1.08997 * 109.47299 * 210.00080 * 1 2 3 31 31 H 1.09001 * 109.46975 * 329.99927 * 1 2 3 32 32 H 1.07992 * 120.32569 * 359.95881 * 3 2 1 33 33 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.46727 * 179.72671 * 5 4 3 35 35 H 0.97001 * 119.99585 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47263 * 299.99710 * 10 9 7 37 37 H 1.08997 * 109.47384 * 60.00321 * 10 9 7 38 38 H 1.08004 * 119.99859 * 0.02562 * 12 11 10 39 39 H 1.07994 * 120.00486 * 180.25037 * 13 12 11 40 40 H 1.09004 * 109.46708 * 30.01960 * 15 14 13 41 41 H 1.08999 * 109.47576 * 150.02136 * 15 14 13 42 42 H 1.08996 * 109.47247 * 299.99788 * 16 15 14 43 43 H 1.09005 * 109.47114 * 60.00217 * 16 15 14 44 44 H 0.97005 * 119.99790 * 0.02562 * 17 16 15 45 45 H 0.96998 * 120.00143 * 179.97438 * 21 20 18 46 46 H 1.07995 * 119.99999 * 179.97438 * 26 14 13 47 47 H 1.07994 * 120.00089 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0199 -0.0049 6 6 3.4821 -1.1925 0.0010 7 6 4.1691 -2.5052 0.0010 8 8 5.3832 -2.5556 0.0015 9 7 3.4475 -3.6436 0.0005 10 6 4.1268 -4.9415 0.0000 11 6 3.1009 -6.0455 -0.0011 12 6 2.6341 -6.5563 1.1956 13 6 1.6895 -7.5656 1.1947 14 6 1.2191 -8.0709 -0.0029 15 6 0.1932 -9.1747 -0.0040 16 6 0.9027 -10.5303 -0.0046 17 7 -0.0947 -11.6034 -0.0050 18 6 0.3078 -12.9123 -0.0061 19 1 1.3606 -13.1535 -0.0062 20 6 -0.6371 -13.9291 -0.0071 21 7 -1.9201 -13.6352 -0.0075 22 14 -0.0880 -15.7145 -0.0078 23 1 1.3957 -15.7760 -0.0078 24 1 -0.6121 -16.3942 1.2041 25 1 -0.6110 -16.3928 -1.2209 26 6 1.6901 -7.5639 -1.1997 27 6 2.6309 -6.5510 -1.1987 28 7 2.1555 -1.1439 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6486 2.1398 -0.0007 33 1 4.1320 2.1271 0.0001 34 1 5.3126 -0.0610 -0.0091 35 1 2.4783 -3.6034 0.0005 36 1 4.7506 -5.0248 -0.8900 37 1 4.7505 -5.0256 0.8900 38 1 3.0044 -6.1640 2.1312 39 1 1.3218 -7.9619 2.1296 40 1 -0.4308 -9.0916 0.8858 41 1 -0.4302 -9.0906 -0.8942 42 1 1.5267 -10.6134 -0.8943 43 1 1.5260 -10.6145 0.8857 44 1 -1.0402 -11.3868 -0.0053 45 1 -2.5804 -14.3457 -0.0085 46 1 1.3230 -7.9590 -2.1353 47 1 2.9991 -6.1551 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480708664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:22 Heat of formation + Delta-G solvation = 2.981451 kcal Electronic energy + Delta-G solvation = -26660.306872 eV Core-core repulsion = 22806.668386 eV Total energy + Delta-G solvation = -3853.638486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72092 -40.66433 -39.91148 -37.23993 -36.11894 -34.40522 -33.98774 -33.52483 -32.43569 -31.86332 -29.96901 -28.70021 -27.26269 -25.72202 -24.78287 -23.65956 -23.25790 -22.96951 -21.79086 -21.57634 -19.26951 -19.21818 -17.74522 -17.22853 -16.93190 -16.83929 -16.58306 -16.50806 -16.27343 -15.97825 -15.45348 -15.35532 -15.29617 -15.07847 -14.94701 -14.61819 -14.30407 -14.03703 -13.74825 -13.71840 -13.52354 -13.20871 -13.10074 -12.96570 -12.89818 -12.89074 -12.52569 -12.38259 -12.11936 -12.02966 -11.82237 -11.69741 -11.53914 -10.97057 -10.94879 -10.59369 -10.29666 -9.94789 -9.83625 -9.58138 -9.03591 -7.97521 -5.27274 -0.39667 0.21113 0.23628 0.48949 1.46893 1.47770 1.58220 1.63346 2.05192 2.54426 2.79827 2.82305 3.05678 3.36126 3.58537 3.70443 3.80539 3.85624 3.87004 4.01263 4.08278 4.12205 4.16132 4.36903 4.43438 4.45174 4.47371 4.54727 4.58898 4.64586 4.73870 4.76080 4.76439 4.82239 5.04661 5.09643 5.10365 5.12249 5.21019 5.24107 5.25332 5.26735 5.44206 5.48675 5.59600 5.64076 5.76575 6.04916 6.25037 6.31790 6.76454 7.03972 7.31142 8.05364 8.30039 9.26117 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001574 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.410746 B =17788.668713 C =18605.683430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.112 3.888 3 C -0.140 4.140 4 C -0.074 4.074 5 C -0.129 4.129 6 C 0.057 3.943 7 C 0.567 3.433 8 O -0.568 6.568 9 N -0.697 5.697 10 C 0.167 3.833 11 C -0.117 4.117 12 C -0.096 4.096 13 C -0.125 4.125 14 C -0.069 4.069 15 C -0.079 4.079 16 C 0.162 3.838 17 N -0.747 5.747 18 C -0.250 4.250 19 H 0.074 0.926 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.125 4.125 27 C -0.096 4.096 28 N -0.481 5.481 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.129 0.871 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.938 36.584 0.006 37.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.029 4.029 3 C -0.159 4.159 4 C -0.099 4.099 5 C -0.150 4.150 6 C -0.080 4.080 7 C 0.353 3.647 8 O -0.447 6.447 9 N -0.348 5.348 10 C 0.045 3.955 11 C -0.118 4.118 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.070 4.070 15 C -0.116 4.116 16 C 0.035 3.965 17 N -0.390 5.390 18 C -0.382 4.382 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.143 4.143 27 C -0.114 4.114 28 N -0.194 5.194 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.194 0.806 33 H 0.194 0.806 34 H 0.164 0.836 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.147 0.853 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.514 35.572 0.008 36.822 hybrid contribution -0.203 -0.679 -0.016 0.709 sum 9.311 34.893 -0.008 36.114 Atomic orbital electron populations 1.20842 0.86506 1.04645 1.04152 1.21900 0.98496 0.88015 0.94474 1.22652 0.95118 1.00261 0.97896 1.22047 0.94875 0.98539 0.94461 1.22271 1.02409 0.92387 0.97971 1.20966 0.90293 0.93734 1.03038 1.18219 0.86193 0.84143 0.76148 1.90763 1.14255 1.87635 1.52068 1.45930 1.11485 1.04651 1.72703 1.20198 0.92772 0.79182 1.03391 1.19763 0.99606 0.98716 0.93694 1.21198 0.96110 0.95925 0.98184 1.21214 0.97911 0.97309 0.97836 1.19912 0.97055 0.95976 0.94073 1.20635 0.96381 0.91567 1.03066 1.20698 0.91538 0.86707 0.97517 1.42594 1.05076 1.01839 1.89503 1.19680 0.92623 0.84319 1.41554 0.90804 1.25597 0.95362 1.02272 1.03429 1.69821 1.00278 1.32470 1.59328 0.85045 0.77828 0.79873 0.76828 1.19158 1.21776 1.21787 1.21215 0.97954 0.97257 0.97847 1.21196 0.96137 0.95912 0.98171 1.67333 1.08300 1.31810 1.11976 0.89360 0.91116 0.87955 0.80609 0.80639 0.83626 0.74670 0.90272 0.90261 0.84346 0.85347 0.90909 0.90913 0.96444 0.96446 0.79291 0.93870 0.85349 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 71.24 0.72 -0.01 16 2 C 0.11 1.38 6.78 42.70 0.29 1.66 16 3 C -0.14 -1.04 9.75 22.44 0.22 -0.82 16 4 C -0.07 -0.62 10.17 22.45 0.23 -0.40 16 5 C -0.13 -1.97 9.63 22.61 0.22 -1.75 16 6 C 0.06 1.11 6.75 41.89 0.28 1.40 16 7 C 0.57 13.03 7.81 86.88 0.68 13.71 16 8 O -0.57 -16.03 16.32 -3.75 -0.06 -16.10 16 9 N -0.70 -13.83 5.54 -469.40 -2.60 -16.43 16 10 C 0.17 3.21 5.80 85.64 0.50 3.71 16 11 C -0.12 -2.38 5.25 -19.87 -0.10 -2.49 16 12 C -0.10 -2.03 9.70 22.27 0.22 -1.81 16 13 C -0.12 -3.09 9.70 22.27 0.22 -2.88 16 14 C -0.07 -1.92 5.13 -19.87 -0.10 -2.02 16 15 C -0.08 -2.59 5.46 29.85 0.16 -2.43 16 16 C 0.16 6.72 6.24 86.38 0.54 7.26 16 17 N -0.75 -39.20 5.60 -343.44 -1.92 -41.13 16 18 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 22 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 C -0.12 -3.10 9.70 22.27 0.22 -2.88 16 27 C -0.10 -2.03 9.70 22.27 0.22 -1.81 16 28 N -0.48 -8.65 9.45 -173.08 -1.64 -10.29 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.20 8.08 -2.39 -0.02 0.18 16 32 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.15 2.18 7.64 -2.91 -0.02 2.15 16 35 H 0.42 7.78 7.79 -92.71 -0.72 7.06 16 36 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 41 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.38 20.63 7.67 -92.70 -0.71 19.91 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -73.91 404.66 1.45 -72.46 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.44 Total: 31.32 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.80 Total: -8.97 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.88 Total: -127.45 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.06 Total: -16.10 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -73.91 1.45 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480708664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.441 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds