Wall clock time and date at job start Tue Mar 31 2020 22:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36618 * 120.91751 * 2 1 4 4 C 1.39278 * 119.90235 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.76930 * 359.97438 * 4 3 2 6 6 C 1.33619 * 121.39705 * 359.97438 * 5 4 3 7 7 C 1.40758 * 120.83393 * 180.02562 * 6 5 4 8 8 C 1.35700 * 120.11042 * 179.67553 * 7 6 5 9 9 C 1.40635 * 120.92298 * 0.56155 * 8 7 6 10 10 C 1.47771 * 119.79969 * 179.73324 * 9 8 7 11 11 O 1.21570 * 119.99555 * 179.72679 * 10 9 8 12 12 N 1.34776 * 120.00219 * 359.72224 * 10 9 8 13 13 C 1.46495 * 119.99941 * 179.72486 * 12 10 9 14 14 C 1.53000 * 109.47049 * 180.27864 * 13 12 10 15 15 N 1.46495 * 109.47049 * 180.02562 * 14 13 12 16 16 C 1.36938 * 120.00435 * 269.99982 * 15 14 13 17 17 H 1.07996 * 120.00477 * 144.92573 * 16 15 14 18 18 C 1.38816 * 119.99406 * 324.92875 * 16 15 14 19 19 N 1.31612 * 120.00437 * 337.93420 * 18 16 15 20 20 Si 1.86805 * 119.99571 * 157.93606 * 18 16 15 21 21 H 1.48497 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47087 * 119.99907 * 20 18 16 23 23 H 1.48498 * 109.46919 * 239.99752 * 20 18 16 24 24 C 1.46505 * 119.99803 * 90.00367 * 15 14 13 25 25 C 1.53004 * 117.49812 * 183.23883 * 24 15 14 26 26 C 1.53004 * 117.50037 * 114.57958 * 24 15 14 27 27 C 1.38546 * 120.40048 * 359.45544 * 9 8 7 28 28 C 1.40189 * 119.39573 * 0.25544 * 27 9 8 29 29 H 1.08995 * 109.47440 * 270.02692 * 1 2 3 30 30 H 1.09007 * 109.47156 * 30.02241 * 1 2 3 31 31 H 1.08996 * 109.47205 * 150.02228 * 1 2 3 32 32 H 1.07995 * 120.05076 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.11610 * 179.97438 * 4 3 2 34 34 H 1.07994 * 119.94698 * 359.97262 * 7 6 5 35 35 H 1.08000 * 119.54387 * 180.29699 * 8 7 6 36 36 H 0.97001 * 119.99263 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47162 * 300.27854 * 13 12 10 38 38 H 1.09006 * 109.47274 * 60.28020 * 13 12 10 39 39 H 1.08999 * 109.47130 * 300.00009 * 14 13 12 40 40 H 1.09006 * 109.46956 * 59.99961 * 14 13 12 41 41 H 0.97001 * 120.00354 * 175.91537 * 19 18 16 42 42 H 1.09001 * 115.55118 * 328.90195 * 24 15 14 43 43 H 1.09010 * 117.49682 * 359.97438 * 25 24 15 44 44 H 1.08994 * 117.50141 * 145.01667 * 25 24 15 45 45 H 1.09003 * 117.49303 * 214.97831 * 26 24 15 46 46 H 1.09003 * 117.49998 * 359.96895 * 26 24 15 47 47 H 1.07996 * 120.30422 * 180.27449 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1721 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2721 0.0204 -0.0006 6 6 3.6479 -1.1611 0.0005 7 6 4.3796 -2.3636 0.0010 8 6 3.7306 -3.5553 0.0086 9 6 2.3254 -3.6130 0.0044 10 6 1.6443 -4.9244 0.0069 11 8 0.4298 -4.9784 0.0083 12 7 2.3694 -6.0604 0.0077 13 6 1.6942 -7.3604 0.0164 14 6 2.7392 -8.4779 0.0225 15 7 2.0639 -9.7779 0.0305 16 6 1.7488 -10.3786 1.2201 17 1 0.8419 -10.9582 1.3089 18 6 2.5953 -10.2423 2.3119 19 7 3.8616 -9.9343 2.1285 20 14 1.9368 -10.4963 4.0415 21 1 0.4916 -10.8316 3.9767 22 1 2.6745 -11.6079 4.6937 23 1 2.1207 -9.2509 4.8290 24 6 1.7257 -10.4355 -1.2342 25 6 0.9539 -11.7546 -1.1604 26 6 2.4326 -11.7537 -1.5563 27 6 1.5758 -2.4478 0.0035 28 6 2.2308 -1.2083 0.0015 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6849 2.1163 -0.0004 33 1 4.1436 2.0814 -0.0010 34 1 5.4592 -2.3377 0.0001 35 1 4.3010 -4.4723 0.0138 36 1 3.3385 -6.0172 0.0070 37 1 1.0714 -7.4405 0.9074 38 1 1.0699 -7.4516 -0.8726 39 1 3.3619 -8.3979 -0.8685 40 1 3.3634 -8.3868 0.9114 41 1 4.4391 -9.7809 2.8927 42 1 1.5024 -9.7677 -2.0663 43 1 0.6982 -12.1333 -0.1707 44 1 0.2232 -11.9547 -1.9440 45 1 2.6740 -11.9531 -2.6004 46 1 3.1497 -12.1314 -0.8275 47 1 0.4969 -2.4940 0.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481171068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:25 Heat of formation + Delta-G solvation = 64.670017 kcal Electronic energy + Delta-G solvation = -28044.732729 eV Core-core repulsion = 24193.769260 eV Total energy + Delta-G solvation = -3850.963469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.21992 -39.46570 -37.20859 -36.79837 -35.07018 -34.76457 -33.28439 -31.32987 -30.58987 -30.55021 -28.33576 -27.59103 -24.99876 -24.10928 -23.80423 -21.90365 -21.37288 -21.21639 -20.81802 -19.80145 -18.40913 -17.98502 -16.85181 -16.35200 -15.97728 -15.61821 -15.38260 -15.09644 -14.74300 -14.59317 -14.48358 -14.29813 -13.91325 -13.78313 -13.69540 -13.39756 -13.07751 -12.87241 -12.77441 -12.64755 -12.00157 -11.94779 -11.80536 -11.65924 -11.55077 -11.08248 -10.77469 -10.75750 -10.47151 -10.34585 -10.16088 -9.91581 -9.78557 -9.72825 -9.67824 -9.32421 -9.08271 -8.66311 -8.53992 -8.39547 -6.68312 -5.88856 -3.49076 0.00201 0.43536 1.66440 2.30292 3.29685 3.34280 3.39564 3.41150 3.44230 3.90909 3.99171 4.20284 4.30628 4.39278 4.47735 4.68041 4.78970 4.87273 4.89706 4.96781 5.06007 5.17244 5.20322 5.24342 5.27347 5.38701 5.61740 5.67192 5.73177 5.80761 5.86997 5.98093 6.03772 6.05976 6.10526 6.18557 6.24375 6.26536 6.46826 6.47531 6.51740 6.58128 6.77557 6.93735 7.02449 7.18329 7.47938 7.62383 7.73428 7.81429 8.37126 8.45023 9.04753 9.67471 10.22161 11.07588 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.002335 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.185209 B =11989.145101 C =12359.567974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.012 4.012 3 C -0.189 4.189 4 C 0.141 3.859 5 N -0.482 5.482 6 C 0.145 3.855 7 C -0.099 4.099 8 C -0.073 4.073 9 C -0.126 4.126 10 C 0.550 3.450 11 O -0.543 6.543 12 N -0.711 5.711 13 C 0.098 3.902 14 C 0.135 3.865 15 N -0.547 5.547 16 C -0.258 4.258 17 H 0.069 0.931 18 C 0.011 3.989 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.119 3.881 25 C -0.195 4.195 26 C -0.220 4.220 27 C -0.032 4.032 28 C -0.113 4.113 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 20.539 -5.837 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.208 4.208 4 C -0.031 4.031 5 N -0.191 5.191 6 C 0.023 3.977 7 C -0.117 4.117 8 C -0.093 4.093 9 C -0.129 4.129 10 C 0.336 3.664 11 O -0.422 6.422 12 N -0.362 5.362 13 C -0.027 4.027 14 C 0.008 3.992 15 N -0.264 5.264 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.189 4.189 19 N -0.526 5.526 20 Si 0.725 3.275 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.010 3.990 25 C -0.233 4.233 26 C -0.261 4.261 27 C -0.052 4.052 28 C -0.115 4.115 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.609 20.303 -5.697 21.096 hybrid contribution -0.603 -0.114 0.946 1.128 sum -1.212 20.189 -4.751 20.776 Atomic orbital electron populations 1.20954 0.89729 1.03976 1.03557 1.20262 0.96827 0.92011 0.92855 1.21752 0.95624 0.98752 1.04717 1.22980 0.91519 0.96468 0.92154 1.68065 1.39908 0.97714 1.13383 1.18993 0.89555 0.92573 0.96561 1.20681 1.00629 0.89709 1.00729 1.21054 0.93148 0.98634 0.96447 1.20116 0.93796 0.94043 1.04982 1.18168 0.87062 0.83896 0.77244 1.90761 1.13417 1.87529 1.50508 1.46030 1.10353 1.06423 1.73387 1.22385 0.97898 0.80812 1.01556 1.21110 0.92795 0.82500 1.02770 1.43230 1.67638 1.15437 1.00086 1.19138 1.02224 1.30061 0.87283 0.91350 1.25125 0.94096 1.00491 0.99208 1.70034 1.03079 1.49638 1.29806 0.86338 0.78901 0.77558 0.84714 1.19923 1.21574 1.21318 1.21240 1.00785 0.86706 0.90278 1.23048 0.94032 1.04094 1.02160 1.23363 0.95104 1.07930 0.99681 1.21469 1.00795 0.89673 0.93213 1.18684 0.94118 0.93971 1.04714 0.89812 0.90467 0.90259 0.84446 0.82320 0.84054 0.84510 0.76763 0.91356 0.92898 0.94939 0.87613 0.93531 0.89457 0.88399 0.90666 0.91162 0.88960 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.59 36.01 0.35 -0.52 16 2 C -0.01 -0.11 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.46 9.72 -39.78 -0.39 -1.85 16 4 C 0.14 1.22 11.14 -17.46 -0.19 1.03 16 5 N -0.48 -5.62 10.33 -10.92 -0.11 -5.74 16 6 C 0.14 1.78 6.61 -84.78 -0.56 1.22 16 7 C -0.10 -1.12 9.95 -39.54 -0.39 -1.51 16 8 C -0.07 -0.83 9.44 -39.59 -0.37 -1.21 16 9 C -0.13 -1.72 5.87 -104.98 -0.62 -2.34 16 10 C 0.55 9.21 7.77 -12.36 -0.10 9.11 16 11 O -0.54 -10.89 16.31 5.30 0.09 -10.81 16 12 N -0.71 -11.60 5.50 -61.27 -0.34 -11.94 16 13 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 14 C 0.14 2.90 5.45 -4.04 -0.02 2.88 16 15 N -0.55 -12.91 2.78 -165.65 -0.46 -13.37 16 16 C -0.26 -6.69 8.63 -15.06 -0.13 -6.82 16 17 H 0.07 1.80 6.55 -52.49 -0.34 1.45 16 18 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 19 N -0.88 -23.90 11.33 55.49 0.63 -23.27 16 20 Si 0.90 21.03 29.61 -169.99 -5.03 16.00 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.12 2.47 6.56 -67.92 -0.45 2.02 16 25 C -0.20 -3.78 9.80 -26.69 -0.26 -4.05 16 26 C -0.22 -4.37 10.36 -26.69 -0.28 -4.64 16 27 C -0.03 -0.40 8.88 -38.74 -0.34 -0.75 16 28 C -0.11 -1.33 5.74 -106.82 -0.61 -1.94 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.38 8.10 -51.92 -0.42 -0.04 16 31 H 0.08 0.58 6.52 -51.93 -0.34 0.24 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 1.30 6.35 -52.49 -0.33 0.96 16 36 H 0.40 5.43 6.46 -40.82 -0.26 5.16 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.11 2.54 5.36 -51.93 -0.28 2.26 16 41 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 42 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.10 2.07 6.37 -51.92 -0.33 1.74 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 47 H 0.15 1.78 6.00 -52.49 -0.31 1.47 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -31.50 388.82 -10.87 -42.37 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.41 Total: 8.88 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -5.10 Total: -7.98 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.28 Total: -54.32 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.50 -10.87 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481171068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.044 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds