Wall clock time and date at job start Tue Mar 31 2020 23:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33225 * 126.01973 * 2 1 4 4 C 1.31542 * 109.75893 * 180.11753 * 3 2 1 5 5 O 1.35201 * 125.48904 * 179.89048 * 4 3 2 6 6 N 1.34942 * 109.01395 * 359.62661 * 4 3 2 7 7 H 0.97002 * 126.53738 * 180.20034 * 6 4 3 8 8 C 1.36720 * 126.01615 * 179.70922 * 2 1 3 9 9 C 1.46376 * 126.82704 * 0.02562 * 8 2 1 10 10 O 1.21734 * 119.99999 * 103.76017 * 9 8 2 11 11 N 1.34778 * 120.00248 * 283.76161 * 9 8 2 12 12 C 1.46505 * 119.99698 * 5.01452 * 11 9 8 13 13 C 1.46500 * 120.00347 * 185.00869 * 11 9 8 14 14 H 1.08998 * 109.47153 * 0.02562 * 13 11 9 15 15 C 1.53005 * 109.47179 * 240.00153 * 13 11 9 16 16 C 1.52997 * 109.46848 * 120.00101 * 13 11 9 17 17 N 1.46898 * 109.47211 * 304.99956 * 16 13 11 18 18 C 1.46907 * 110.99978 * 180.02562 * 17 16 13 19 19 C 1.50693 * 109.47215 * 180.02562 * 18 17 16 20 20 O 1.21294 * 119.99977 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00050 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00013 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00185 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00128 * 180.02562 * 22 21 19 25 25 N 1.31401 * 119.99589 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47605 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47010 * 119.99926 * 26 24 22 29 29 H 1.48502 * 109.46856 * 239.99804 * 26 24 22 30 30 H 1.09004 * 109.47088 * 270.29805 * 1 2 3 31 31 H 1.09007 * 109.47238 * 30.29704 * 1 2 3 32 32 H 1.08999 * 109.47583 * 150.30170 * 1 2 3 33 33 H 0.96701 * 114.00165 * 269.69439 * 5 4 3 34 34 H 1.08994 * 109.47353 * 94.46616 * 12 11 9 35 35 H 1.09002 * 109.46822 * 214.46441 * 12 11 9 36 36 H 1.09002 * 109.47118 * 334.45935 * 12 11 9 37 37 H 1.09000 * 109.46727 * 180.02562 * 15 13 11 38 38 H 1.09001 * 109.46809 * 299.99987 * 15 13 11 39 39 H 1.09001 * 109.46645 * 60.00153 * 15 13 11 40 40 H 1.09004 * 109.47205 * 65.00605 * 16 13 11 41 41 H 1.09007 * 109.46915 * 185.00125 * 16 13 11 42 42 H 1.00900 * 111.00148 * 56.05041 * 17 16 13 43 43 H 1.09005 * 109.46859 * 299.99863 * 18 17 16 44 44 H 1.08999 * 109.47247 * 59.99893 * 18 17 16 45 45 H 0.96998 * 120.00263 * 359.97438 * 21 19 18 46 46 H 0.97005 * 120.00071 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0025 5 8 4.6149 1.5462 -0.0054 6 7 3.6180 -0.6386 0.0040 7 1 4.4243 -1.1780 0.0067 8 6 2.3109 -1.1058 0.0056 9 6 1.8791 -2.5045 0.0122 10 8 1.9395 -3.1649 -1.0086 11 7 1.4146 -3.0610 1.1484 12 6 1.2382 -2.2387 2.3480 13 6 1.0859 -4.4883 1.1839 14 1 1.2807 -4.9303 0.2068 15 6 -0.3925 -4.6625 1.5375 16 6 1.9482 -5.1840 2.2389 17 7 3.3666 -4.9162 1.9664 18 6 4.2266 -5.5707 2.9616 19 6 5.6708 -5.2735 2.6505 20 8 5.9558 -4.5847 1.6936 21 7 6.6459 -5.7740 3.4348 22 6 7.9598 -5.5041 3.1515 23 1 8.2136 -4.8908 2.2995 24 6 8.9652 -6.0205 3.9599 25 7 8.6564 -6.7671 4.9962 26 14 10.7554 -5.6521 3.5742 27 1 10.8349 -4.7948 2.3643 28 1 11.3741 -4.9448 4.7241 29 1 11.4804 -6.9244 3.3273 30 1 -0.3633 0.0053 1.0277 31 1 -0.3634 0.8874 -0.5185 32 1 -0.3634 -0.8926 -0.5091 33 1 4.9248 1.7855 -0.8896 34 1 0.2085 -1.8850 2.3979 35 1 1.4610 -2.8347 3.2330 36 1 1.9142 -1.3846 2.3056 37 1 -0.6369 -5.7244 1.5643 38 1 -0.5868 -4.2205 2.5148 39 1 -1.0067 -4.1668 0.7858 40 1 1.6899 -4.8041 3.2274 41 1 1.7681 -6.2586 2.2043 42 1 3.5466 -3.9241 1.9292 43 1 3.9843 -5.1937 3.9552 44 1 4.0622 -6.6478 2.9316 45 1 6.4180 -6.3251 4.1998 46 1 9.3582 -7.1280 5.5603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482295003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:47 Heat of formation + Delta-G solvation = -41.749502 kcal Electronic energy + Delta-G solvation = -30126.907487 eV Core-core repulsion = 25860.480058 eV Total energy + Delta-G solvation = -4266.427429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44796 -40.00600 -38.34035 -37.62585 -36.91093 -34.71494 -33.84988 -33.43825 -32.20763 -31.25883 -30.63753 -27.65887 -27.51443 -26.91808 -25.07494 -23.64484 -23.09692 -21.78508 -20.67424 -19.71386 -19.28400 -18.95040 -17.94823 -17.81575 -17.00408 -16.59346 -16.11214 -15.91548 -15.68185 -15.01709 -14.65820 -14.46340 -14.37952 -14.10240 -13.92140 -13.59566 -13.44853 -13.29660 -13.05866 -12.87436 -12.77211 -12.70699 -12.62027 -12.32173 -12.15935 -11.95965 -11.71560 -11.65579 -11.47210 -11.14450 -11.02392 -10.60728 -10.38696 -10.27640 -10.27100 -10.02239 -9.57267 -8.96042 -8.51939 -8.49516 -8.11859 -8.01332 -6.46872 -3.87787 1.30615 1.91814 2.42028 2.75953 2.93203 3.12426 3.23353 3.30220 3.69393 3.84561 4.00655 4.21678 4.39310 4.64454 4.78763 4.83222 4.86029 4.92065 5.06267 5.11378 5.20167 5.21389 5.35362 5.39401 5.44941 5.47500 5.48313 5.59680 5.65562 5.66503 5.71778 5.82540 5.91399 5.97172 6.18991 6.20248 6.31879 6.50513 7.07220 7.13239 7.38589 7.50278 7.55307 7.59801 7.91040 8.00946 8.55539 9.12605 9.48611 9.99683 10.70866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003085 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.665089 B = 9074.453113 C =11055.115044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.067 3.933 3 N -0.483 5.483 4 C 0.398 3.602 5 O -0.439 6.439 6 N -0.538 5.538 7 H 0.432 0.568 8 C -0.059 4.059 9 C 0.602 3.398 10 O -0.513 6.513 11 N -0.596 5.596 12 C 0.074 3.926 13 C 0.138 3.862 14 H 0.112 0.888 15 C -0.158 4.158 16 C 0.048 3.952 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.586 6.586 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.345 0.655 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.843 9.400 -4.090 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 N -0.214 5.214 4 C 0.097 3.903 5 O -0.240 6.240 6 N -0.154 5.154 7 H 0.273 0.727 8 C -0.177 4.177 9 C 0.386 3.614 10 O -0.387 6.387 11 N -0.330 5.330 12 C -0.069 4.069 13 C 0.035 3.965 14 H 0.130 0.870 15 C -0.217 4.217 16 C -0.082 4.082 17 N -0.297 5.297 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.470 6.470 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.164 0.836 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.631 9.758 -4.997 21.617 hybrid contribution 1.763 -0.598 0.869 2.054 sum -16.868 9.161 -4.128 19.634 Atomic orbital electron populations 1.20179 0.86658 1.03379 1.02864 1.20708 0.96348 0.86147 1.03455 1.70161 0.98591 1.30118 1.22488 1.20073 0.87278 0.78592 1.04337 1.84857 1.43356 1.61428 1.34386 1.43645 1.08705 1.07869 1.55190 0.72732 1.20436 0.84073 0.95080 1.18071 1.16736 0.77471 0.83679 0.83472 1.90879 1.53832 1.62054 1.31906 1.47740 1.64856 1.09651 1.10785 1.21834 1.02095 0.95651 0.87347 1.21267 0.93865 0.79167 1.02182 0.86958 1.22094 0.94851 1.02732 1.02010 1.22365 0.88782 1.00998 0.96102 1.60004 1.02165 1.17734 1.49799 1.21690 0.93077 1.00391 0.93082 1.19789 0.86309 0.85572 0.85772 1.90503 1.83400 1.42570 1.30523 1.41866 1.05742 1.45673 1.26590 1.19741 0.80935 1.29975 1.12279 0.87927 1.25267 1.00573 0.96479 0.95584 1.69614 1.34278 1.34037 1.16264 0.85803 0.81796 0.78256 0.78508 1.19241 1.20718 1.20674 0.90584 0.90272 0.90958 0.73678 0.91866 0.90954 0.90840 0.90993 0.92211 0.91843 0.95111 0.89561 0.83591 0.94021 0.89425 0.77456 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.23 36.00 0.37 -0.26 16 2 C 0.07 0.80 6.77 -82.54 -0.56 0.24 16 3 N -0.48 -6.33 11.22 -10.83 -0.12 -6.45 16 4 C 0.40 4.88 9.43 -89.59 -0.84 4.04 16 5 O -0.44 -4.41 13.62 -17.30 -0.24 -4.65 16 6 N -0.54 -6.70 6.24 -10.91 -0.07 -6.77 16 7 H 0.43 5.26 8.96 -40.82 -0.37 4.90 16 8 C -0.06 -0.76 5.09 -81.98 -0.42 -1.17 16 9 C 0.60 8.28 7.13 -12.99 -0.09 8.18 16 10 O -0.51 -8.92 16.45 5.16 0.08 -8.83 16 11 N -0.60 -6.55 1.83 -175.58 -0.32 -6.88 16 12 C 0.07 0.63 9.31 59.85 0.56 1.19 16 13 C 0.14 1.47 2.95 -67.93 -0.20 1.27 16 14 H 0.11 1.49 6.91 -51.93 -0.36 1.13 16 15 C -0.16 -1.16 9.19 37.16 0.34 -0.82 16 16 C 0.05 0.55 4.96 -3.83 -0.02 0.53 16 17 N -0.66 -10.68 6.12 -115.05 -0.70 -11.38 16 18 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 19 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 20 O -0.59 -15.76 15.78 5.54 0.09 -15.68 16 21 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 23 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 26 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.60 7.93 -51.93 -0.41 0.18 16 33 H 0.41 1.91 9.06 45.56 0.41 2.32 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 36 H 0.07 0.72 6.49 -51.93 -0.34 0.38 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.37 7.67 -51.93 -0.40 -0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.03 0.31 6.91 -51.93 -0.36 -0.05 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.34 5.89 7.56 -39.29 -0.30 5.59 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -35.98 391.25 -6.63 -42.61 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -5.67 Total: 17.69 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: -1.22 Total: 16.32 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -0.55 Total: -69.30 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.98 -6.63 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482295003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.862 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds