Wall clock time and date at job start Tue Mar 31 2020 23:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35833 * 126.45658 * 2 1 4 4 H 0.97001 * 124.92242 * 0.02562 * 3 2 1 5 5 N 1.28468 * 110.16529 * 179.97438 * 3 2 1 6 6 C 1.31925 * 110.20959 * 0.02562 * 5 3 2 7 7 C 1.47522 * 126.46213 * 180.02562 * 6 5 3 8 8 O 1.21591 * 120.00362 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99603 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99799 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47173 * 324.99573 * 10 9 7 12 12 C 1.52995 * 109.47268 * 84.99874 * 10 9 7 13 13 C 1.53002 * 109.46818 * 205.00269 * 10 9 7 14 14 N 1.46894 * 109.47524 * 54.99534 * 13 10 9 15 15 C 1.46905 * 110.99770 * 66.04724 * 14 13 10 16 16 C 1.46899 * 111.00283 * 189.99810 * 14 13 10 17 17 C 1.50694 * 109.47286 * 170.00154 * 16 14 13 18 18 O 1.21291 * 120.00176 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99722 * 180.02562 * 17 16 14 20 20 C 1.37101 * 119.99625 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00094 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00125 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99624 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00234 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47087 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47395 * 119.99725 * 24 22 20 27 27 H 1.48503 * 109.46774 * 239.99595 * 24 22 20 28 28 C 1.35776 * 126.46197 * 179.68482 * 2 1 3 29 29 O 1.36089 * 127.26628 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47152 * 90.02480 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02581 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02562 * 1 2 3 33 33 H 0.97003 * 120.00143 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47441 * 300.00246 * 12 10 9 35 35 H 1.09005 * 109.47333 * 60.00165 * 12 10 9 36 36 H 1.09005 * 109.47547 * 179.97438 * 12 10 9 37 37 H 1.09005 * 109.46856 * 175.00268 * 13 10 9 38 38 H 1.09008 * 109.46820 * 294.99283 * 13 10 9 39 39 H 1.09009 * 109.46906 * 59.99941 * 15 14 13 40 40 H 1.08994 * 109.47139 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47375 * 300.00098 * 15 14 13 42 42 H 1.09007 * 109.47467 * 290.00708 * 16 14 13 43 43 H 1.08997 * 109.46837 * 50.00075 * 16 14 13 44 44 H 0.96993 * 120.00264 * 0.02562 * 19 17 16 45 45 H 0.97001 * 119.99876 * 180.02562 * 23 22 20 46 46 H 0.96703 * 113.99913 * 89.99585 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0118 0.0004 5 7 3.5473 0.7321 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8810 -1.3776 0.0014 8 8 4.8271 -2.5923 0.0006 9 7 6.0769 -0.7561 0.0031 10 6 7.3120 -1.5442 0.0036 11 1 7.1649 -2.4498 0.5920 12 6 7.6756 -1.9231 -1.4334 13 6 8.4445 -0.7170 0.6152 14 7 8.0456 -0.2523 1.9504 15 6 7.8973 -1.3815 2.8782 16 6 9.0006 0.7350 2.4712 17 6 8.4392 1.3673 3.7186 18 8 7.3509 1.0285 4.1333 19 7 9.1465 2.3093 4.3735 20 6 8.6360 2.8842 5.5086 21 1 7.6670 2.5825 5.8779 22 6 9.3649 3.8557 6.1835 23 7 10.5438 4.2232 5.7340 24 14 8.6697 4.6385 7.7306 25 1 7.3363 4.0547 8.0245 26 1 9.5857 4.3804 8.8706 27 1 8.5342 6.1032 7.5263 28 6 2.3139 -1.0920 0.0060 29 8 1.9326 -2.3983 0.0137 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 6.1199 0.2130 0.0034 34 1 6.8688 -2.5124 -1.8691 35 1 7.8228 -1.0175 -2.0219 36 1 8.5948 -2.5091 -1.4332 37 1 9.3405 -1.3323 0.6971 38 1 8.6514 0.1429 -0.0221 39 1 8.8468 -1.9106 2.9614 40 1 7.6020 -1.0094 3.8592 41 1 7.1337 -2.0625 2.5026 42 1 9.9427 0.2401 2.7071 43 1 9.1731 1.5052 1.7195 44 1 10.0167 2.5806 4.0417 45 1 11.0529 4.9012 6.2053 46 1 1.8220 -2.7809 -0.8675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483327135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:35 Heat of formation + Delta-G solvation = -32.206514 kcal Electronic energy + Delta-G solvation = -29660.356673 eV Core-core repulsion = 25394.343059 eV Total energy + Delta-G solvation = -4266.013614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82154 -39.56149 -38.49955 -37.35354 -36.80810 -34.60045 -33.73212 -32.96128 -31.48319 -31.20819 -30.45404 -27.94764 -27.07974 -26.84223 -24.90105 -24.40969 -22.47948 -21.49446 -20.57763 -20.02490 -19.10813 -18.39307 -17.81153 -17.31624 -17.00939 -16.15859 -16.07584 -15.92637 -15.23219 -14.77488 -14.63929 -14.43075 -14.29935 -14.08530 -13.90840 -13.85021 -13.51462 -13.37375 -13.24673 -12.86805 -12.79724 -12.44261 -12.07301 -11.95498 -11.80560 -11.76372 -11.48264 -11.30680 -11.20768 -10.90147 -10.67009 -10.50375 -10.33055 -10.20331 -9.92222 -9.50298 -9.46103 -8.91573 -8.84553 -8.40549 -7.94742 -7.81173 -6.39747 -3.80112 1.45700 1.72429 2.54536 3.17174 3.20564 3.27492 3.34968 3.47014 3.93950 3.98674 4.09987 4.26919 4.40549 4.51093 4.79569 4.83914 5.07985 5.11093 5.17300 5.25275 5.28723 5.31984 5.45382 5.48903 5.54167 5.57756 5.66622 5.76731 5.78857 5.92818 6.00622 6.03799 6.04315 6.15006 6.32000 6.60684 6.66102 6.72346 7.30765 7.41994 7.50360 7.55956 7.57526 7.81360 8.09473 8.37669 8.65024 9.21104 9.57674 10.10145 10.78269 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.002795 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.761591 B =10014.025663 C =11880.316462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.015 4.015 3 N -0.373 5.373 4 H 0.450 0.550 5 N -0.234 5.234 6 C -0.026 4.026 7 C 0.605 3.395 8 O -0.535 6.535 9 N -0.691 5.691 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.514 5.514 15 C 0.021 3.979 16 C 0.045 3.955 17 C 0.445 3.555 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.044 3.956 29 O -0.451 6.451 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.368 -7.628 -17.973 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 N -0.091 5.091 4 H 0.295 0.705 5 N -0.071 5.071 6 C -0.188 4.188 7 C 0.389 3.611 8 O -0.410 6.410 9 N -0.342 5.342 10 C 0.042 3.958 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.086 4.086 14 N -0.238 5.238 15 C -0.126 4.126 16 C -0.086 4.086 17 C 0.231 3.769 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.012 4.012 29 O -0.256 6.256 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.763 -7.430 -17.019 22.533 hybrid contribution 0.552 0.569 0.235 0.827 sum -12.210 -6.861 -16.784 21.860 Atomic orbital electron populations 1.20303 0.86076 1.04319 1.03176 1.21552 0.95400 0.87483 1.09601 1.43087 1.02869 1.09304 1.53795 0.70453 1.73683 1.01553 1.14175 1.17732 1.22403 0.95425 0.90007 1.10920 1.16711 0.81650 0.86317 0.76402 1.90787 1.86748 1.12698 1.50777 1.45638 1.04273 1.11027 1.73245 1.20978 0.83411 0.95176 0.96240 0.89281 1.22154 1.01945 1.01774 0.96127 1.22499 0.95555 0.99018 0.91550 1.61554 1.47119 1.13751 1.01396 1.22560 0.98854 0.92053 0.99161 1.21874 0.93465 0.95693 0.97565 1.19748 0.87067 0.83802 0.86326 1.90503 1.21742 1.64569 1.68990 1.41873 1.19230 1.34830 1.24430 1.19737 1.04058 1.17525 1.01224 0.87942 1.25245 0.95660 0.97436 0.99679 1.69623 1.11991 1.32066 1.40812 0.85821 0.79065 0.78667 0.80919 1.19257 1.20794 1.20791 1.17776 0.89086 0.84992 1.09301 1.84917 1.88778 1.19195 1.32678 0.90399 0.90862 0.89286 0.75355 0.91867 0.92316 0.91595 0.93458 0.90241 0.96746 0.88678 0.92046 0.93484 0.89451 0.77551 0.91996 0.76186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.44 36.01 0.38 -0.08 16 2 C -0.01 -0.14 7.27 -81.70 -0.59 -0.74 16 3 N -0.37 -3.59 6.87 33.71 0.23 -3.36 16 4 H 0.45 2.62 8.96 -190.44 -1.71 0.91 16 5 N -0.23 -3.10 11.91 33.45 0.40 -2.70 16 6 C -0.03 -0.38 7.13 -82.70 -0.59 -0.96 16 7 C 0.61 9.58 7.78 -12.47 -0.10 9.49 16 8 O -0.53 -9.62 16.19 3.10 0.05 -9.57 16 9 N -0.69 -9.70 4.80 -54.85 -0.26 -9.96 16 10 C 0.15 1.85 2.35 -67.93 -0.16 1.69 16 11 H 0.09 1.28 6.23 -51.93 -0.32 0.96 16 12 C -0.16 -1.62 9.48 37.15 0.35 -1.27 16 13 C 0.04 0.53 4.52 -3.83 -0.02 0.52 16 14 N -0.51 -8.58 4.22 -244.37 -1.03 -9.61 16 15 C 0.02 0.37 8.96 60.07 0.54 0.91 16 16 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 17 C 0.45 10.55 7.47 -10.99 -0.08 10.47 16 18 O -0.57 -15.66 13.91 5.55 0.08 -15.59 16 19 N -0.57 -14.42 5.29 -10.96 -0.06 -14.47 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.04 0.57 7.28 -39.12 -0.28 0.28 16 29 O -0.45 -5.50 13.20 -22.21 -0.29 -5.79 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 5.72 8.32 -40.82 -0.34 5.38 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.54 8.12 -51.93 -0.42 0.11 16 38 H 0.08 0.88 7.93 -51.92 -0.41 0.47 16 39 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 40 H 0.09 2.01 5.82 -51.93 -0.30 1.71 16 41 H 0.06 1.04 6.58 -51.93 -0.34 0.70 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.38 2.88 9.07 45.56 0.41 3.29 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -36.72 391.07 -7.18 -43.91 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -7.06 Total: 15.90 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.83 Total: 13.13 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.00 Total: -64.09 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.17 Total: -30.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.72 -7.18 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483327135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.700 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds