Wall clock time and date at job start Tue Mar 31 2020 22:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.85683 * 2 1 4 4 C 1.38306 * 119.30812 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.08154 * 0.02562 * 4 3 2 6 6 C 1.31669 * 121.87732 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56349 * 359.73461 * 6 5 4 8 8 C 1.47842 * 120.55893 * 180.28785 * 7 6 5 9 9 O 1.21552 * 120.00034 * 236.10213 * 8 7 6 10 10 N 1.34776 * 119.99926 * 56.10324 * 8 7 6 11 11 C 1.46503 * 119.99809 * 185.30419 * 10 8 7 12 12 C 1.52999 * 109.47226 * 90.00196 * 11 10 8 13 13 N 1.46495 * 109.47366 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00417 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99387 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00622 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99405 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47087 * 89.99767 * 18 16 14 20 20 H 1.48500 * 109.47129 * 209.99897 * 18 16 14 21 21 H 1.48500 * 109.47004 * 329.99856 * 18 16 14 22 22 C 1.46502 * 120.00170 * 5.30397 * 10 8 7 23 23 C 1.50708 * 109.46709 * 92.71348 * 22 10 8 24 24 C 1.38230 * 120.00084 * 268.49691 * 23 22 10 25 25 C 1.38232 * 119.99938 * 179.76971 * 24 23 22 26 26 C 1.38230 * 119.99816 * 0.50989 * 25 24 23 27 27 C 1.38234 * 120.00316 * 359.74627 * 26 25 24 28 28 C 1.38230 * 119.99808 * 88.77651 * 23 22 10 29 29 H 1.08999 * 109.46924 * 86.69736 * 1 2 3 30 30 H 1.08994 * 109.47060 * 326.69928 * 1 2 3 31 31 H 1.09000 * 109.46731 * 206.69560 * 1 2 3 32 32 H 1.08003 * 120.34693 * 359.96164 * 3 2 1 33 33 H 1.08003 * 119.46688 * 179.97438 * 4 3 2 34 34 H 1.07995 * 119.71711 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.46696 * 209.99955 * 11 10 8 36 36 H 1.08994 * 109.47149 * 330.00095 * 11 10 8 37 37 H 1.09005 * 109.46720 * 300.00128 * 12 11 10 38 38 H 1.09003 * 109.47025 * 59.99644 * 12 11 10 39 39 H 0.96999 * 119.99918 * 0.02562 * 13 12 11 40 40 H 0.96999 * 120.00030 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47150 * 212.71340 * 22 10 8 42 42 H 1.09001 * 109.46971 * 332.71409 * 22 10 8 43 43 H 1.08003 * 119.99974 * 0.02562 * 24 23 22 44 44 H 1.08003 * 120.00087 * 180.23208 * 25 24 23 45 45 H 1.08002 * 119.99945 * 179.72616 * 26 25 24 46 46 H 1.08001 * 119.99980 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.00033 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2499 0.0025 0.0005 6 6 3.6198 -1.1537 -0.0005 7 6 2.2250 -1.2017 0.0040 8 6 1.5176 -2.4999 0.0093 9 8 0.7086 -2.7548 -0.8614 10 7 1.7698 -3.4008 0.9794 11 6 1.1577 -4.7306 0.9213 12 6 2.0771 -5.6821 0.1531 13 7 1.4654 -7.0120 0.0954 14 6 2.1101 -8.0350 -0.5470 15 1 3.0699 -7.8615 -1.0109 16 6 1.5303 -9.2950 -0.6021 17 7 0.3609 -9.5064 -0.0363 18 14 2.4102 -10.6907 -1.4779 19 1 3.2834 -11.4074 -0.5141 20 1 1.4086 -11.6349 -2.0352 21 1 3.2379 -10.1394 -2.5807 22 6 2.6560 -3.0504 2.0922 23 6 1.8366 -2.5107 3.2361 24 6 1.6017 -1.1523 3.3376 25 6 0.8461 -0.6578 4.3842 26 6 0.3343 -1.5207 5.3351 27 6 0.5736 -2.8786 5.2366 28 6 1.3248 -3.3735 4.1870 29 1 -0.3633 0.0592 -1.0260 30 1 -0.3633 0.8589 0.5642 31 1 -0.3633 -0.9181 0.4617 32 1 1.6966 2.1345 -0.0006 33 1 4.1559 2.0763 0.0001 34 1 4.1872 -2.0726 0.0000 35 1 1.0095 -5.1068 1.9335 36 1 0.1956 -4.6658 0.4132 37 1 2.2254 -5.3057 -0.8591 38 1 3.0393 -5.7468 0.6612 39 1 0.6032 -7.1676 0.5118 40 1 -0.0446 -10.3868 -0.0751 41 1 3.1967 -3.9383 2.4196 42 1 3.3673 -2.2919 1.7651 43 1 2.0051 -0.4777 2.5968 44 1 0.6594 0.4032 4.4614 45 1 -0.2523 -1.1339 6.1553 46 1 0.1740 -3.5526 5.9798 47 1 1.5118 -4.4345 4.1100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484399755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:36 Heat of formation + Delta-G solvation = 25.102033 kcal Electronic energy + Delta-G solvation = -29340.893206 eV Core-core repulsion = 25488.213941 eV Total energy + Delta-G solvation = -3852.679266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08416 -40.43330 -39.83068 -37.51681 -36.30450 -34.94714 -33.77307 -32.56905 -32.31315 -31.77909 -29.74268 -28.82622 -27.29112 -26.14068 -24.85010 -23.72272 -23.40707 -22.86403 -22.55679 -20.61733 -19.26104 -18.68339 -17.96516 -17.61515 -17.39881 -17.31659 -16.69352 -16.29201 -15.91684 -15.88230 -15.65278 -15.33999 -15.14630 -15.05776 -14.84914 -14.64088 -14.27070 -14.17178 -13.91645 -13.73475 -13.67217 -13.43559 -13.13930 -13.06654 -12.94317 -12.85506 -12.74002 -12.44639 -12.17881 -12.11322 -11.89555 -11.88908 -11.35503 -10.99286 -10.56805 -10.46319 -10.20023 -9.87180 -9.83020 -9.71485 -9.08149 -7.98770 -5.29639 -0.23644 0.14404 0.32845 0.49025 1.45553 1.48120 1.48319 1.56690 1.82121 2.54545 2.69242 2.87679 3.27906 3.34838 3.48098 3.61421 3.73775 3.75927 3.79868 4.00312 4.06324 4.07435 4.14249 4.18310 4.22302 4.28368 4.39289 4.49188 4.49808 4.55144 4.62027 4.65589 4.69560 4.70890 4.83503 4.93114 5.03161 5.06193 5.08170 5.13376 5.23582 5.33153 5.45810 5.54616 5.60581 5.61066 5.65537 6.08827 6.19736 6.22503 6.84600 6.95144 7.28906 7.99594 8.25303 9.24576 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.003265 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.863883 B = 8572.550132 C =10103.157830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.004 4.004 3 C -0.164 4.164 4 C 0.117 3.883 5 N -0.502 5.502 6 C 0.127 3.873 7 C -0.190 4.190 8 C 0.564 3.436 9 O -0.568 6.568 10 N -0.588 5.588 11 C 0.125 3.875 12 C 0.150 3.850 13 N -0.741 5.741 14 C -0.251 4.251 15 H 0.074 0.926 16 C -0.071 4.071 17 N -0.967 5.967 18 Si 0.977 3.023 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.272 1.272 22 C 0.139 3.861 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.117 4.117 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.178 0.822 33 H 0.196 0.804 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.002 0.998 38 H 0.034 0.966 39 H 0.376 0.624 40 H 0.253 0.747 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 28.163 10.723 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.012 4.012 3 C -0.183 4.183 4 C -0.039 4.039 5 N -0.211 5.211 6 C -0.031 4.031 7 C -0.195 4.195 8 C 0.353 3.647 9 O -0.447 6.447 10 N -0.318 5.318 11 C 0.002 3.998 12 C 0.022 3.978 13 N -0.385 5.385 14 C -0.382 4.382 15 H 0.092 0.908 16 C -0.264 4.264 17 N -0.617 5.617 18 Si 0.805 3.195 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.197 1.197 22 C 0.017 3.983 23 C -0.118 4.118 24 C -0.128 4.128 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.136 4.136 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.196 0.804 33 H 0.212 0.788 34 H 0.179 0.821 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.208 0.792 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.154 0.846 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.406 27.952 10.163 30.066 hybrid contribution -1.047 -1.567 -0.541 1.961 sum 3.358 26.385 9.621 28.285 Atomic orbital electron populations 1.20870 0.89468 1.03393 1.03536 1.20544 0.97348 0.91667 0.91686 1.22355 0.95447 0.98852 1.01630 1.23586 0.92299 0.96802 0.91178 1.67794 1.41051 0.98631 1.13611 1.22940 0.89640 0.97355 0.93169 1.20721 0.95931 0.93312 1.09567 1.18612 0.81184 0.84087 0.80822 1.90802 1.36025 1.79246 1.38607 1.47830 1.48175 1.12593 1.23231 1.21347 0.96104 0.80958 1.01400 1.20944 0.95597 0.84784 0.96480 1.42361 1.23352 1.05915 1.66866 1.19579 1.01816 0.89741 1.27078 0.90838 1.25600 0.98005 1.00230 1.02541 1.69816 1.18497 1.22652 1.50759 0.85101 0.77269 0.78887 0.78255 1.20786 1.21979 1.19700 1.20886 0.90953 1.02519 0.83943 1.20193 1.00671 0.94400 0.96529 1.21136 0.98808 0.94367 0.98518 1.21414 0.97476 1.00989 0.94342 1.21504 0.99407 0.93299 0.99507 1.21435 0.98470 0.96484 0.98339 1.21282 0.97730 0.99823 0.94739 0.90190 0.87602 0.93634 0.80444 0.78770 0.82135 0.88911 0.91949 0.98008 0.94799 0.79243 0.93787 0.88098 0.87851 0.86373 0.83803 0.83785 0.84599 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.37 71.24 0.67 -1.51 16 2 C 0.00 -0.08 5.18 -19.40 -0.10 -0.18 16 3 C -0.16 -2.01 9.82 22.32 0.22 -1.79 16 4 C 0.12 1.54 11.17 84.69 0.95 2.49 16 5 N -0.50 -9.85 10.35 -194.75 -2.01 -11.87 16 6 C 0.13 2.79 8.71 85.04 0.74 3.53 16 7 C -0.19 -4.62 4.19 -19.99 -0.08 -4.71 16 8 C 0.56 17.98 6.08 86.79 0.53 18.50 16 9 O -0.57 -23.18 15.79 -3.88 -0.06 -23.24 16 10 N -0.59 -17.30 2.46 -829.56 -2.04 -19.34 16 11 C 0.13 4.47 5.58 86.38 0.48 4.95 16 12 C 0.15 6.44 6.58 86.38 0.57 7.01 16 13 N -0.74 -39.57 5.60 -343.46 -1.92 -41.49 16 14 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 15 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 17 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 18 Si 0.98 47.06 29.55 68.60 2.03 49.08 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.14 3.13 5.38 85.64 0.46 3.59 16 23 C -0.12 -2.54 5.46 -19.87 -0.11 -2.65 16 24 C -0.11 -2.10 9.69 22.27 0.22 -1.89 16 25 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 27 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 28 C -0.12 -2.56 9.54 22.27 0.21 -2.35 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.04 1.12 6.83 -2.39 -0.02 1.11 16 32 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.16 3.40 7.60 -2.91 -0.02 3.38 16 35 H 0.09 3.03 7.66 -2.39 -0.02 3.02 16 36 H 0.06 2.56 7.35 -2.39 -0.02 2.54 16 37 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.38 21.02 7.67 -92.71 -0.71 20.31 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.10 2.15 8.04 -2.39 -0.02 2.13 16 42 H 0.10 2.06 4.44 -2.39 -0.01 2.05 16 43 H 0.12 2.12 6.51 -2.91 -0.02 2.10 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 45 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 46 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.12 2.66 7.81 -2.91 -0.02 2.64 16 Total: -1.00 -76.81 393.40 3.27 -73.53 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.28 Total: 31.34 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.73 Total: 1.90 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.69 Total: -132.61 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.81 3.27 -73.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484399755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.635 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds