Wall clock time and date at job start Tue Mar 31 2020 22:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31692 * 119.72011 * 2 1 4 4 C 1.31915 * 121.88025 * 179.97438 * 3 2 1 5 5 C 1.38355 * 121.08329 * 359.97438 * 4 3 2 6 6 C 1.38362 * 119.29864 * 0.27846 * 5 4 3 7 7 C 1.39519 * 119.71275 * 179.97438 * 2 1 3 8 8 C 1.47847 * 120.56016 * 0.02562 * 7 2 1 9 9 O 1.21557 * 119.99714 * 54.35984 * 8 7 2 10 10 N 1.34768 * 120.00139 * 234.35664 * 8 7 2 11 11 C 1.46494 * 120.00339 * 5.87174 * 10 8 7 12 12 C 1.52997 * 109.47434 * 89.99490 * 11 10 8 13 13 N 1.46503 * 109.47463 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00060 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00040 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99929 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46929 * 119.99758 * 18 16 14 21 21 H 1.48497 * 109.46752 * 239.99760 * 18 16 14 22 22 C 1.46506 * 120.00078 * 185.86887 * 10 8 7 23 23 C 1.50705 * 109.47036 * 95.12347 * 22 10 8 24 24 C 1.38237 * 119.99682 * 268.19884 * 23 22 10 25 25 C 1.38241 * 119.99501 * 179.76615 * 24 23 22 26 26 C 1.38236 * 119.99921 * 0.50591 * 25 24 23 27 27 C 1.38233 * 120.00086 * 359.74965 * 26 25 24 28 28 C 1.38235 * 120.00225 * 359.97438 * 27 26 25 29 29 H 1.08990 * 109.47349 * 92.39502 * 1 2 3 30 30 H 1.09001 * 109.47503 * 212.40235 * 1 2 3 31 31 H 1.09008 * 109.46603 * 332.39450 * 1 2 3 32 32 H 1.08003 * 119.46245 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.35573 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.84932 * 179.69745 * 6 5 4 35 35 H 1.09005 * 109.47435 * 210.00308 * 11 10 8 36 36 H 1.08999 * 109.47084 * 329.99898 * 11 10 8 37 37 H 1.08993 * 109.47395 * 300.00374 * 12 11 10 38 38 H 1.08999 * 109.46860 * 60.00655 * 12 11 10 39 39 H 0.97004 * 119.99896 * 0.02562 * 13 12 11 40 40 H 0.97005 * 120.00136 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47267 * 215.12445 * 22 10 8 42 42 H 1.09003 * 109.46971 * 335.12746 * 22 10 8 43 43 H 1.07992 * 120.00497 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.99788 * 180.22305 * 25 24 23 45 45 H 1.07999 * 119.99828 * 179.72201 * 26 25 24 46 46 H 1.08002 * 120.00057 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00336 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4781 1.1934 0.0005 5 6 4.2366 0.0363 0.0016 6 6 3.5986 -1.1915 -0.0037 7 6 2.1986 -1.2118 0.0005 8 6 1.4655 -2.4957 0.0005 9 8 0.6317 -2.7194 -0.8553 10 7 1.7216 -3.4179 0.9493 11 6 2.6302 -3.1000 2.0536 12 6 1.8330 -2.5005 3.2137 13 7 2.7416 -2.1831 4.3182 14 6 2.2506 -1.6333 5.4722 15 1 1.1936 -1.4339 5.5683 16 6 3.1117 -1.3321 6.5186 17 7 4.3998 -1.5756 6.4017 18 14 2.4418 -0.5826 8.0931 19 1 0.9718 -0.4099 7.9728 20 1 2.7432 -1.4812 9.2363 21 1 3.0781 0.7395 8.3216 22 6 1.0912 -4.7384 0.8765 23 6 2.0269 -5.7049 0.1972 24 6 1.9556 -5.8903 -1.1708 25 6 2.8172 -6.7733 -1.7944 26 6 3.7431 -7.4786 -1.0487 27 6 3.8109 -7.2971 0.3200 28 6 2.9531 -6.4099 0.9429 29 1 -0.3633 -0.0429 -1.0267 30 1 -0.3634 -0.8676 0.5507 31 1 -0.3633 0.9108 0.4762 32 1 3.9735 2.1531 0.0009 33 1 5.3152 0.0907 0.0024 34 1 4.1661 -2.1104 -0.0079 35 1 3.1289 -4.0100 2.3873 36 1 3.3757 -2.3805 1.7150 37 1 1.3344 -1.5905 2.8800 38 1 1.0875 -3.2200 3.5523 39 1 3.6910 -2.3626 4.2321 40 1 5.0014 -1.3655 7.1330 41 1 0.8716 -5.0923 1.8837 42 1 0.1650 -4.6678 0.3061 43 1 1.2290 -5.3429 -1.7527 44 1 2.7638 -6.9155 -2.8637 45 1 4.4132 -8.1718 -1.5353 46 1 4.5340 -7.8485 0.9027 47 1 3.0058 -6.2684 2.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484400628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:11 Heat of formation + Delta-G solvation = 44.552083 kcal Electronic energy + Delta-G solvation = -29402.288798 eV Core-core repulsion = 25550.452949 eV Total energy + Delta-G solvation = -3851.835848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90214 -39.60195 -38.65227 -36.29244 -34.40453 -33.09412 -32.80252 -31.76220 -30.98663 -30.93017 -27.96562 -27.87599 -26.30333 -24.39419 -23.58477 -22.62777 -22.34217 -21.61437 -21.47703 -19.52654 -17.59552 -17.18724 -16.72925 -16.62087 -16.38759 -16.21901 -15.47288 -15.10118 -14.88227 -14.43181 -14.36515 -14.11622 -13.83594 -13.53985 -13.49038 -13.37955 -13.14042 -13.05568 -12.96733 -12.56454 -12.41387 -12.14244 -12.04542 -11.91214 -11.60180 -11.31115 -11.16756 -11.04015 -10.93573 -10.82247 -10.17108 -10.11530 -9.82214 -9.73649 -9.44593 -9.00151 -8.96633 -8.92309 -8.88313 -8.60574 -7.02270 -5.83606 -3.13269 0.82862 1.18816 1.22852 1.32387 2.63659 2.99059 3.39782 3.46248 3.47926 3.73851 3.81346 4.24379 4.42391 4.58085 4.68724 4.71249 4.78331 4.80762 4.91928 5.04454 5.06687 5.19398 5.20923 5.40545 5.42088 5.51760 5.53221 5.53810 5.59847 5.62061 5.70948 5.72161 5.82837 5.90079 5.96672 6.01464 6.03118 6.08168 6.11838 6.35892 6.37117 6.41728 6.52118 6.58485 6.62731 6.72729 6.90791 7.34302 7.65217 7.94854 8.10013 8.34281 9.46162 9.99692 10.34887 11.39074 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.004142 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.885592 B = 6759.055967 C = 8926.818269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.178 3.822 3 N -0.486 5.486 4 C 0.123 3.877 5 C -0.180 4.180 6 C -0.039 4.039 7 C -0.176 4.176 8 C 0.575 3.425 9 O -0.534 6.534 10 N -0.593 5.593 11 C 0.091 3.909 12 C 0.142 3.858 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.151 3.849 23 C -0.104 4.104 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -6.539 -17.149 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.040 3.960 3 N -0.195 5.195 4 C -0.034 4.034 5 C -0.200 4.200 6 C -0.065 4.065 7 C -0.181 4.181 8 C 0.362 3.638 9 O -0.411 6.411 10 N -0.324 5.324 11 C -0.031 4.031 12 C 0.013 3.987 13 N -0.374 5.374 14 C -0.370 4.370 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.029 3.971 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.122 4.122 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.973 -5.813 -17.461 18.509 hybrid contribution 0.875 -0.465 1.070 1.459 sum -1.098 -6.278 -16.391 17.586 Atomic orbital electron populations 1.20752 0.88275 1.03556 1.03473 1.21284 0.97085 0.86675 0.90988 1.67556 1.10091 1.28488 1.13384 1.22898 0.89337 0.98732 0.92441 1.22044 1.01798 0.92990 1.03117 1.21619 0.92764 0.99009 0.93082 1.20644 0.94732 0.94733 1.07986 1.18096 0.81710 0.82963 0.81018 1.90746 1.33370 1.79190 1.37830 1.47821 1.47140 1.12614 1.24872 1.22090 0.92483 1.01780 0.86791 1.20934 0.93308 0.96733 0.87697 1.42184 1.06433 1.75766 1.12967 1.19225 0.93024 1.33127 0.91647 0.91136 1.24722 0.95428 1.01960 0.98552 1.69659 1.01916 1.53871 1.32629 0.86126 0.78016 0.78610 0.83520 1.20494 1.21772 1.21771 1.20416 0.94879 0.80249 1.01572 1.20249 0.98188 0.97867 0.94187 1.21180 0.98937 0.97541 0.94144 1.21147 0.96236 0.97239 0.99774 1.21163 0.98669 0.99663 0.94275 1.21158 0.99326 0.98801 0.94816 1.21181 0.94911 0.95909 1.00161 0.89731 0.90690 0.90244 0.82339 0.84129 0.84415 0.89932 0.89726 0.96279 0.95938 0.78301 0.93501 0.89150 0.88473 0.85731 0.86270 0.86321 0.86019 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.24 36.01 0.33 -1.10 16 2 C 0.18 2.76 6.82 -82.17 -0.56 2.20 16 3 N -0.49 -7.46 10.26 -9.14 -0.09 -7.56 16 4 C 0.12 1.59 11.17 -17.47 -0.20 1.40 16 5 C -0.18 -2.17 10.10 -39.49 -0.40 -2.57 16 6 C -0.04 -0.51 7.68 -38.87 -0.30 -0.81 16 7 C -0.18 -2.65 4.95 -104.82 -0.52 -3.17 16 8 C 0.57 8.77 6.09 -12.33 -0.08 8.69 16 9 O -0.53 -8.91 15.62 5.32 0.08 -8.83 16 10 N -0.59 -8.33 2.46 -176.17 -0.43 -8.76 16 11 C 0.09 1.40 5.37 -4.05 -0.02 1.38 16 12 C 0.14 2.77 6.58 -4.04 -0.03 2.74 16 13 N -0.73 -17.75 5.60 -59.91 -0.34 -18.08 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 C 0.15 1.87 5.63 -5.19 -0.03 1.84 16 23 C -0.10 -1.23 5.46 -104.62 -0.57 -1.80 16 24 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 25 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 28 C -0.10 -1.17 9.36 -39.58 -0.37 -1.54 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.07 7.00 -51.93 -0.36 0.71 16 31 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.61 7.51 -52.48 -0.39 1.22 16 35 H 0.08 1.20 7.36 -51.93 -0.38 0.82 16 36 H 0.08 1.31 4.44 -51.93 -0.23 1.07 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.38 9.68 7.67 -40.82 -0.31 9.36 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 1.04 8.06 -51.93 -0.42 0.63 16 42 H 0.10 1.22 7.14 -51.93 -0.37 0.85 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 47 H 0.13 1.35 7.71 -52.49 -0.40 0.95 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -32.54 395.60 -10.32 -42.86 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.65 Total: 10.29 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.56 Total: -6.32 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.14 Total: -61.07 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.54 -10.32 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484400628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.415 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds