Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31692 * 119.72011 * 2 1 4 4 C 1.31915 * 121.88025 * 179.97438 * 3 2 1 5 5 C 1.38355 * 121.08329 * 359.97438 * 4 3 2 6 6 C 1.38362 * 119.29864 * 0.27846 * 5 4 3 7 7 C 1.39519 * 119.71275 * 179.97438 * 2 1 3 8 8 C 1.47847 * 120.56016 * 0.02562 * 7 2 1 9 9 O 1.21557 * 119.99714 * 54.35984 * 8 7 2 10 10 N 1.34768 * 120.00139 * 234.35664 * 8 7 2 11 11 C 1.46494 * 120.00339 * 5.87174 * 10 8 7 12 12 C 1.52997 * 109.47434 * 89.99490 * 11 10 8 13 13 N 1.46503 * 109.47463 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00060 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00040 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99929 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46929 * 119.99758 * 18 16 14 21 21 H 1.48497 * 109.46752 * 239.99760 * 18 16 14 22 22 C 1.46506 * 120.00078 * 185.86887 * 10 8 7 23 23 C 1.50705 * 109.47036 * 95.12347 * 22 10 8 24 24 C 1.38237 * 119.99682 * 268.19884 * 23 22 10 25 25 C 1.38241 * 119.99501 * 179.76615 * 24 23 22 26 26 C 1.38236 * 119.99921 * 0.50591 * 25 24 23 27 27 C 1.38233 * 120.00086 * 359.74965 * 26 25 24 28 28 C 1.38235 * 120.00225 * 359.97438 * 27 26 25 29 29 H 1.08990 * 109.47349 * 92.39502 * 1 2 3 30 30 H 1.09001 * 109.47503 * 212.40235 * 1 2 3 31 31 H 1.09008 * 109.46603 * 332.39450 * 1 2 3 32 32 H 1.08003 * 119.46245 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.35573 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.84932 * 179.69745 * 6 5 4 35 35 H 1.09005 * 109.47435 * 210.00308 * 11 10 8 36 36 H 1.08999 * 109.47084 * 329.99898 * 11 10 8 37 37 H 1.08993 * 109.47395 * 300.00374 * 12 11 10 38 38 H 1.08999 * 109.46860 * 60.00655 * 12 11 10 39 39 H 0.97004 * 119.99896 * 0.02562 * 13 12 11 40 40 H 0.97005 * 120.00136 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47267 * 215.12445 * 22 10 8 42 42 H 1.09003 * 109.46971 * 335.12746 * 22 10 8 43 43 H 1.07992 * 120.00497 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.99788 * 180.22305 * 25 24 23 45 45 H 1.07999 * 119.99828 * 179.72201 * 26 25 24 46 46 H 1.08002 * 120.00057 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00336 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4781 1.1934 0.0005 5 6 4.2366 0.0363 0.0016 6 6 3.5986 -1.1915 -0.0037 7 6 2.1986 -1.2118 0.0005 8 6 1.4655 -2.4957 0.0005 9 8 0.6317 -2.7194 -0.8553 10 7 1.7216 -3.4179 0.9493 11 6 2.6302 -3.1000 2.0536 12 6 1.8330 -2.5005 3.2137 13 7 2.7416 -2.1831 4.3182 14 6 2.2506 -1.6333 5.4722 15 1 1.1936 -1.4339 5.5683 16 6 3.1117 -1.3321 6.5186 17 7 4.3998 -1.5756 6.4017 18 14 2.4418 -0.5826 8.0931 19 1 0.9718 -0.4099 7.9728 20 1 2.7432 -1.4812 9.2363 21 1 3.0781 0.7395 8.3216 22 6 1.0912 -4.7384 0.8765 23 6 2.0269 -5.7049 0.1972 24 6 1.9556 -5.8903 -1.1708 25 6 2.8172 -6.7733 -1.7944 26 6 3.7431 -7.4786 -1.0487 27 6 3.8109 -7.2971 0.3200 28 6 2.9531 -6.4099 0.9429 29 1 -0.3633 -0.0429 -1.0267 30 1 -0.3634 -0.8676 0.5507 31 1 -0.3633 0.9108 0.4762 32 1 3.9735 2.1531 0.0009 33 1 5.3152 0.0907 0.0024 34 1 4.1661 -2.1104 -0.0079 35 1 3.1289 -4.0100 2.3873 36 1 3.3757 -2.3805 1.7150 37 1 1.3344 -1.5905 2.8800 38 1 1.0875 -3.2200 3.5523 39 1 3.6910 -2.3626 4.2321 40 1 5.0014 -1.3655 7.1330 41 1 0.8716 -5.0923 1.8837 42 1 0.1650 -4.6678 0.3061 43 1 1.2290 -5.3429 -1.7527 44 1 2.7638 -6.9155 -2.8637 45 1 4.4132 -8.1718 -1.5353 46 1 4.5340 -7.8485 0.9027 47 1 3.0058 -6.2684 2.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484400628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = 26.769712 kcal Electronic energy + Delta-G solvation = -29403.059899 eV Core-core repulsion = 25550.452949 eV Total energy + Delta-G solvation = -3852.606950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01375 -40.57438 -39.64330 -37.67932 -36.08775 -34.13492 -33.92719 -33.31098 -32.26105 -31.78685 -29.49225 -28.98196 -27.35045 -25.92096 -24.98033 -23.59199 -23.41596 -23.09849 -22.37570 -20.67345 -19.34056 -18.35391 -17.91432 -17.61632 -17.59961 -17.25257 -16.72116 -16.29061 -15.98103 -15.68376 -15.53038 -15.48399 -15.27128 -14.95701 -14.88773 -14.44673 -14.28462 -14.21098 -14.03848 -13.50399 -13.46370 -13.25502 -13.12253 -13.08628 -12.97573 -12.91919 -12.81180 -12.50642 -12.15020 -12.07624 -11.88258 -11.84710 -11.32155 -11.00849 -10.81172 -10.52502 -10.01430 -9.84279 -9.82047 -9.69064 -9.04988 -7.97428 -5.26739 -0.23595 0.17406 0.35006 0.49873 1.44721 1.47074 1.48498 1.57377 1.87635 2.54925 2.70776 2.93433 3.17477 3.35045 3.36818 3.65357 3.79522 3.85286 3.89634 3.95805 4.03882 4.13498 4.16383 4.22996 4.27809 4.30809 4.46059 4.50966 4.52849 4.54001 4.58315 4.63343 4.71133 4.75871 4.91204 4.99792 5.01027 5.04007 5.06508 5.08827 5.16158 5.37486 5.48225 5.56935 5.61166 5.61909 5.67259 6.10383 6.14786 6.24986 6.88326 6.92206 7.32267 8.01751 8.28310 9.25439 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.004142 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.885592 B = 6759.055967 C = 8926.818269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 N -0.508 5.508 4 C 0.114 3.886 5 C -0.174 4.174 6 C -0.046 4.046 7 C -0.195 4.195 8 C 0.576 3.424 9 O -0.553 6.553 10 N -0.587 5.587 11 C 0.109 3.891 12 C 0.148 3.852 13 N -0.736 5.736 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.063 4.063 17 N -0.962 5.962 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.150 3.850 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.129 4.129 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.190 0.810 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.005 0.995 38 H 0.024 0.976 39 H 0.378 0.622 40 H 0.253 0.747 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.138 0.862 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -7.115 -17.509 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.017 3.983 3 N -0.218 5.218 4 C -0.043 4.043 5 C -0.193 4.193 6 C -0.072 4.072 7 C -0.200 4.200 8 C 0.364 3.636 9 O -0.432 6.432 10 N -0.317 5.317 11 C -0.014 4.014 12 C 0.020 3.980 13 N -0.380 5.380 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.257 4.257 17 N -0.612 5.612 18 Si 0.796 3.204 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.219 1.219 22 C 0.029 3.971 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.132 4.132 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.207 0.793 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.023 0.977 38 H 0.042 0.958 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.156 0.844 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.884 -6.408 -17.841 18.978 hybrid contribution 0.534 -0.301 1.112 1.270 sum -0.350 -6.708 -16.730 18.028 Atomic orbital electron populations 1.20707 0.88002 1.03181 1.03700 1.21496 0.97702 0.87144 0.91913 1.67571 1.11476 1.28515 1.14261 1.23519 0.88784 1.00566 0.91399 1.22447 1.03463 0.92092 1.01333 1.21902 0.92185 1.00340 0.92745 1.20734 0.95708 0.94360 1.09196 1.18203 0.81404 0.83165 0.80847 1.90726 1.34254 1.79590 1.38641 1.47776 1.46829 1.13087 1.24037 1.21811 0.91887 1.02083 0.85654 1.20962 0.93066 0.96186 0.87822 1.42276 1.06750 1.75549 1.13406 1.19521 0.93036 1.32532 0.92730 0.91318 1.25436 0.95763 1.03021 1.01436 1.69780 1.02854 1.55188 1.33357 0.85185 0.77819 0.77478 0.79953 1.19544 1.21665 1.21940 1.20498 0.94884 0.79673 1.02053 1.20164 0.98603 0.98252 0.94381 1.21215 0.99515 0.98342 0.94143 1.21410 0.95788 0.96623 1.00896 1.21494 0.98500 0.99489 0.94152 1.21445 0.99235 0.98408 0.95394 1.21280 0.95200 0.96389 1.00321 0.89156 0.91768 0.89833 0.79323 0.80799 0.82938 0.88689 0.89436 0.97709 0.95835 0.78934 0.93815 0.88444 0.88991 0.86699 0.84420 0.83737 0.84172 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.81 9.24 71.24 0.66 -2.16 16 2 C 0.16 4.86 6.82 42.89 0.29 5.15 16 3 N -0.51 -15.43 10.26 -182.85 -1.88 -17.31 16 4 C 0.11 2.78 11.17 84.71 0.95 3.73 16 5 C -0.17 -3.85 10.10 22.33 0.23 -3.62 16 6 C -0.05 -1.16 7.68 22.73 0.17 -0.99 16 7 C -0.19 -5.86 4.95 -19.99 -0.10 -5.96 16 8 C 0.58 17.71 6.09 86.79 0.53 18.24 16 9 O -0.55 -18.87 15.62 -3.90 -0.06 -18.93 16 10 N -0.59 -16.39 2.46 -829.57 -2.04 -18.43 16 11 C 0.11 3.27 5.37 86.38 0.46 3.73 16 12 C 0.15 5.74 6.58 86.38 0.57 6.31 16 13 N -0.74 -35.76 5.60 -343.46 -1.92 -37.69 16 14 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 15 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 16 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 17 N -0.96 -56.40 13.06 21.65 0.28 -56.11 16 18 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 C 0.15 3.72 5.63 85.63 0.48 4.20 16 23 C -0.11 -2.62 5.46 -19.86 -0.11 -2.73 16 24 C -0.11 -2.59 9.70 22.27 0.22 -2.37 16 25 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 26 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 28 C -0.11 -2.42 9.36 22.27 0.21 -2.21 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 1.92 7.00 -2.39 -0.02 1.90 16 31 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.15 3.31 7.51 -2.91 -0.02 3.29 16 35 H 0.09 2.66 7.36 -2.38 -0.02 2.64 16 36 H 0.09 2.62 4.44 -2.39 -0.01 2.61 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.38 19.03 7.67 -92.71 -0.71 18.32 16 40 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 41 H 0.10 2.23 8.06 -2.39 -0.02 2.21 16 42 H 0.09 2.36 7.14 -2.39 -0.02 2.35 16 43 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.13 2.60 7.71 -2.91 -0.02 2.57 16 Total: -1.00 -69.06 395.60 3.22 -65.85 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.27 Total: 35.88 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.54 Total: -0.53 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.56 Total: -129.53 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.06 Total: -18.93 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.06 3.22 -65.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484400628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.616 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds