Wall clock time and date at job start Tue Mar 31 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38347 * 120.35094 * 2 1 4 4 N 1.31926 * 121.07917 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.88026 * 359.68558 * 4 3 2 6 6 C 1.39524 * 120.56552 * 0.58178 * 5 4 3 7 7 C 1.47840 * 120.55833 * 179.72842 * 6 5 4 8 8 O 1.21555 * 119.99783 * 179.71543 * 7 6 5 9 9 N 1.34776 * 119.99971 * 359.72086 * 7 6 5 10 10 C 1.46508 * 119.99709 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.38258 * 119.99460 * 255.37446 * 11 10 9 13 13 C 1.38213 * 119.99647 * 179.97438 * 12 11 10 14 14 C 1.38260 * 119.99982 * 359.78310 * 13 12 11 15 15 C 1.38216 * 119.99841 * 0.49783 * 14 13 12 16 16 C 1.38204 * 120.00005 * 75.39787 * 11 10 9 17 17 C 1.50700 * 120.00521 * 359.97438 * 16 11 10 18 18 N 1.46498 * 109.47462 * 178.00477 * 17 16 11 19 19 C 1.46490 * 120.00161 * 273.78343 * 18 17 16 20 20 C 1.36942 * 119.99551 * 93.77981 * 18 17 16 21 21 H 1.07996 * 120.00615 * 21.82226 * 20 18 17 22 22 C 1.38811 * 119.99457 * 201.81587 * 20 18 17 23 23 N 1.31619 * 120.00429 * 15.25167 * 22 20 18 24 24 Si 1.86809 * 119.99836 * 195.24956 * 22 20 18 25 25 H 1.48494 * 109.46932 * 0.02562 * 24 22 20 26 26 H 1.48491 * 109.46845 * 120.00513 * 24 22 20 27 27 H 1.48501 * 109.46806 * 240.00377 * 24 22 20 28 28 C 1.38360 * 120.34409 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47116 * 269.97661 * 1 2 3 30 30 H 1.09006 * 109.46671 * 29.97701 * 1 2 3 31 31 H 1.08996 * 109.46972 * 149.97577 * 1 2 3 32 32 H 1.07994 * 119.46414 * 0.02658 * 3 2 1 33 33 H 1.08001 * 119.72083 * 180.28964 * 5 4 3 34 34 H 0.96993 * 120.00058 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46866 * 60.00057 * 10 9 7 36 36 H 1.08996 * 109.47353 * 300.00304 * 10 9 7 37 37 H 1.08002 * 120.00432 * 0.02562 * 12 11 10 38 38 H 1.07997 * 120.00045 * 180.02562 * 13 12 11 39 39 H 1.07998 * 119.99843 * 180.25744 * 14 13 12 40 40 H 1.07993 * 119.99901 * 179.76331 * 15 14 13 41 41 H 1.09003 * 109.46778 * 298.00580 * 17 16 11 42 42 H 1.09002 * 109.46804 * 57.99969 * 17 16 11 43 43 H 1.09001 * 109.47460 * 93.48407 * 19 18 17 44 44 H 1.09003 * 109.46951 * 213.49036 * 19 18 17 45 45 H 1.09006 * 109.47370 * 333.48427 * 19 18 17 46 46 H 0.97003 * 120.00106 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.85617 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1013 0.0051 6 6 3.6054 -1.1438 -0.0003 7 6 4.4023 -2.3890 -0.0001 8 8 3.8432 -3.4684 0.0004 9 7 5.7486 -2.3275 -0.0002 10 6 6.5383 -3.5615 0.0006 11 6 8.0058 -3.2188 0.0009 12 6 8.7480 -3.3566 -1.1574 13 6 10.0938 -3.0417 -1.1574 14 6 10.6967 -2.5848 -0.0001 15 6 9.9560 -2.4526 1.1593 16 6 8.6097 -2.7672 1.1591 17 6 7.8007 -2.6170 2.4216 18 7 8.6735 -2.1723 3.5109 19 6 9.4172 -3.1559 4.3018 20 6 8.7943 -0.8370 3.7898 21 1 8.0226 -0.1484 3.4789 22 6 9.9085 -0.3686 4.4723 23 7 10.9767 -1.1288 4.5887 24 14 9.8921 1.3408 5.2255 25 1 8.5827 1.9876 4.9567 26 1 10.1009 1.2375 6.6920 27 1 10.9796 2.1559 4.6269 28 6 2.2060 -1.1941 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6631 2.1274 0.0004 33 1 5.3136 0.1557 0.0092 34 1 6.1947 -1.4662 -0.0009 35 1 6.3012 -4.1452 -0.8890 36 1 6.3014 -4.1439 0.8910 37 1 8.2760 -3.7094 -2.0625 38 1 10.6735 -3.1489 -2.0622 39 1 11.7474 -2.3348 -0.0012 40 1 10.4279 -2.0993 2.0641 41 1 7.0133 -1.8801 2.2630 42 1 7.3535 -3.5761 2.6828 43 1 10.4118 -3.2877 3.8757 44 1 9.5058 -2.8037 5.3295 45 1 8.8872 -4.1084 4.2886 46 1 11.7555 -0.8012 5.0653 47 1 1.6857 -2.1405 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484554942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:37 Heat of formation + Delta-G solvation = 31.964457 kcal Electronic energy + Delta-G solvation = -28850.092737 eV Core-core repulsion = 24997.711048 eV Total energy + Delta-G solvation = -3852.381689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74604 -40.69388 -39.81973 -37.37246 -36.13371 -34.64148 -33.77632 -33.41387 -32.05371 -31.47249 -28.35839 -28.09858 -27.69867 -27.01079 -24.95392 -23.85139 -23.77237 -22.28565 -21.48322 -21.42598 -18.97984 -18.72035 -17.99079 -17.74788 -17.20327 -16.93343 -16.56239 -16.42439 -15.93203 -15.68298 -15.49231 -15.24176 -15.09890 -14.77858 -14.61973 -14.33818 -14.14093 -14.00719 -13.68211 -13.61515 -13.48844 -13.44204 -13.28225 -13.01764 -12.81080 -12.80102 -12.57350 -12.31489 -12.05394 -11.93831 -11.82748 -11.61474 -11.41592 -10.89658 -10.62298 -10.50745 -10.22886 -9.94351 -9.62157 -9.38917 -8.82868 -7.82430 -5.28472 -0.42232 0.14360 0.40917 0.67589 1.44733 1.48234 1.56463 1.75592 2.12131 2.51153 2.77764 3.02810 3.27738 3.32451 3.65066 3.66203 3.74806 3.78881 3.84524 3.92016 4.08293 4.18727 4.20785 4.38737 4.42308 4.47079 4.62289 4.72864 4.75038 4.78076 4.81069 4.82498 4.84496 4.95980 5.04111 5.16570 5.22458 5.23107 5.27033 5.29930 5.38820 5.58847 5.61792 5.65557 5.69205 5.87068 5.99012 6.27591 6.34767 6.38664 6.81067 7.03715 7.15779 7.85660 8.30537 9.21097 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009225 B = 0.003593 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.444879 B = 7790.164146 C = 9685.245910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.506 5.506 5 C 0.123 3.877 6 C -0.193 4.193 7 C 0.566 3.434 8 O -0.570 6.570 9 N -0.707 5.707 10 C 0.173 3.827 11 C -0.118 4.118 12 C -0.103 4.103 13 C -0.129 4.129 14 C -0.128 4.128 15 C -0.117 4.117 16 C -0.089 4.089 17 C 0.184 3.816 18 N -0.608 5.608 19 C 0.175 3.825 20 C -0.256 4.256 21 H 0.067 0.933 22 C -0.042 4.042 23 N -0.929 5.929 24 Si 0.956 3.044 25 H -0.270 1.270 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.030 4.030 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.408 0.592 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.247 0.753 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 -0.299 -14.147 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.041 4.041 4 N -0.214 5.214 5 C -0.035 4.035 6 C -0.198 4.198 7 C 0.353 3.647 8 O -0.451 6.451 9 N -0.358 5.358 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.135 4.135 16 C -0.092 4.092 17 C 0.058 3.942 18 N -0.330 5.330 19 C 0.030 3.970 20 C -0.386 4.386 21 H 0.085 0.915 22 C -0.238 4.238 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.195 1.195 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.057 4.057 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.207 0.793 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.797 -0.248 -14.038 21.134 hybrid contribution 0.782 0.440 0.962 1.315 sum -15.014 0.191 -13.076 19.911 Atomic orbital electron populations 1.20824 0.87030 1.04721 1.03876 1.21272 0.99729 0.92714 1.00349 1.23497 0.89372 0.99280 0.91904 1.67744 1.09397 1.31105 1.13132 1.23105 1.00856 0.86794 0.92775 1.20939 0.95721 0.94104 1.09020 1.18220 0.82209 0.88468 0.75780 1.90744 1.71686 1.30754 1.51934 1.45976 1.05335 1.10669 1.73793 1.20100 0.85702 0.86074 1.03060 1.19653 0.94973 1.03645 0.93607 1.21231 0.94040 0.99470 0.97405 1.21327 0.95339 0.99870 0.98102 1.21393 1.00080 0.99807 0.93378 1.21495 0.94796 0.98194 0.99061 1.20976 0.94993 0.96949 0.96252 1.19948 0.91678 0.97898 0.84700 1.44053 1.52119 1.02943 1.33902 1.20569 0.93573 0.88698 0.94142 1.19417 1.01706 0.84759 1.32679 0.91500 1.25546 0.94866 1.00629 1.02741 1.70192 1.03504 1.37955 1.45905 0.85368 0.77437 0.80913 0.77717 1.19498 1.22084 1.22073 1.21821 0.92076 0.99993 0.91780 0.89706 0.88936 0.90391 0.79341 0.81893 0.75525 0.89293 0.91329 0.83405 0.83586 0.86375 0.86588 0.91972 0.92391 0.97319 0.96209 0.95912 0.94346 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.03 71.24 0.71 -0.22 16 2 C -0.14 -2.23 5.89 -19.81 -0.12 -2.35 16 3 C 0.12 2.04 10.85 84.70 0.92 2.96 16 4 N -0.51 -11.95 10.35 -194.76 -2.01 -13.97 16 5 C 0.12 2.90 10.71 85.02 0.91 3.81 16 6 C -0.19 -4.66 5.89 -19.99 -0.12 -4.77 16 7 C 0.57 15.51 7.78 86.79 0.68 16.18 16 8 O -0.57 -18.75 16.42 -3.89 -0.06 -18.82 16 9 N -0.71 -17.82 4.98 -469.69 -2.34 -20.16 16 10 C 0.17 4.47 5.15 85.63 0.44 4.92 16 11 C -0.12 -3.38 5.25 -19.87 -0.10 -3.49 16 12 C -0.10 -2.56 9.67 22.27 0.22 -2.35 16 13 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 14 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 15 C -0.12 -4.81 9.14 22.27 0.20 -4.61 16 16 C -0.09 -3.24 5.88 -19.87 -0.12 -3.36 16 17 C 0.18 7.32 5.00 85.63 0.43 7.75 16 18 N -0.61 -29.57 1.73 -731.32 -1.27 -30.84 16 19 C 0.18 8.60 8.61 127.77 1.10 9.70 16 20 C -0.26 -13.58 9.17 84.03 0.77 -12.81 16 21 H 0.07 3.51 7.84 -2.91 -0.02 3.48 16 22 C -0.04 -2.29 5.04 84.86 0.43 -1.86 16 23 N -0.93 -53.01 10.78 21.65 0.23 -52.78 16 24 Si 0.96 44.64 29.58 68.60 2.03 46.66 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 C -0.03 -0.63 9.39 22.73 0.21 -0.42 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.46 8.09 -2.38 -0.02 0.44 16 31 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 32 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 3.50 6.42 -2.91 -0.02 3.49 16 34 H 0.41 9.65 6.53 -92.71 -0.61 9.04 16 35 H 0.09 2.04 7.96 -2.38 -0.02 2.03 16 36 H 0.07 1.94 7.22 -2.39 -0.02 1.92 16 37 H 0.15 2.71 8.00 -2.91 -0.02 2.68 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.12 5.92 5.75 -2.91 -0.02 5.90 16 41 H 0.06 2.40 7.51 -2.39 -0.02 2.39 16 42 H 0.06 2.19 7.30 -2.39 -0.02 2.17 16 43 H 0.01 0.46 6.81 -2.39 -0.02 0.44 16 44 H 0.02 1.03 7.21 -2.39 -0.02 1.01 16 45 H 0.02 0.97 7.89 -2.38 -0.02 0.95 16 46 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.15 2.94 7.74 -2.91 -0.02 2.92 16 Total: -1.00 -67.95 389.71 3.98 -63.97 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.39 Total: 24.11 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 7.01 Total: 1.81 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.39 Total: -117.74 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.95 3.98 -63.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484554942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.936 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds