Wall clock time and date at job start Tue Mar 31 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38626 * 120.47005 * 2 1 4 4 C 1.38581 * 118.49387 * 180.02562 * 3 2 1 5 5 C 1.38609 * 119.34524 * 0.02562 * 4 3 2 6 6 N 1.31491 * 120.90231 * 359.71718 * 5 4 3 7 7 C 1.32744 * 121.64396 * 0.57639 * 6 5 4 8 8 C 1.48159 * 119.72573 * 179.70579 * 7 6 5 9 9 O 1.21517 * 120.00519 * 173.27494 * 8 7 6 10 10 N 1.34778 * 119.99829 * 353.27582 * 8 7 6 11 11 C 1.46501 * 120.00042 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47309 * 180.02562 * 11 10 8 13 13 C 1.38267 * 119.99760 * 257.00688 * 12 11 10 14 14 C 1.38207 * 119.99910 * 179.97438 * 13 12 11 15 15 C 1.38254 * 120.00161 * 359.78784 * 14 13 12 16 16 C 1.38224 * 119.99732 * 0.49037 * 15 14 13 17 17 C 1.38207 * 120.00255 * 77.02606 * 12 11 10 18 18 C 1.50705 * 120.00067 * 359.97438 * 17 12 11 19 19 N 1.46501 * 109.47042 * 174.09132 * 18 17 12 20 20 C 1.46501 * 119.99683 * 273.67411 * 19 18 17 21 21 C 1.36933 * 120.00180 * 93.67487 * 19 18 17 22 22 H 1.08011 * 119.99705 * 17.38142 * 21 19 18 23 23 C 1.38810 * 120.00216 * 197.37706 * 21 19 18 24 24 N 1.31615 * 119.99822 * 21.79118 * 23 21 19 25 25 Si 1.86794 * 120.00031 * 201.78037 * 23 21 19 26 26 H 1.48497 * 109.47064 * 94.99629 * 25 23 21 27 27 H 1.48502 * 109.47247 * 214.99536 * 25 23 21 28 28 H 1.48503 * 109.47445 * 334.99416 * 25 23 21 29 29 H 1.08999 * 109.47232 * 264.23296 * 1 2 3 30 30 H 1.08999 * 109.47237 * 24.22837 * 1 2 3 31 31 H 1.09003 * 109.47461 * 144.23378 * 1 2 3 32 32 H 1.08008 * 120.75713 * 0.04392 * 3 2 1 33 33 H 1.08002 * 120.33028 * 179.97438 * 4 3 2 34 34 H 1.08007 * 119.54668 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00162 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47406 * 59.99711 * 11 10 8 37 37 H 1.09006 * 109.47266 * 300.00192 * 11 10 8 38 38 H 1.07998 * 119.99842 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00099 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.00688 * 180.25375 * 15 14 13 41 41 H 1.07997 * 119.99703 * 179.75998 * 16 15 14 42 42 H 1.08994 * 109.46608 * 294.09082 * 18 17 12 43 43 H 1.08997 * 109.47109 * 54.08926 * 18 17 12 44 44 H 1.08998 * 109.47075 * 92.58462 * 20 19 18 45 45 H 1.08999 * 109.46758 * 212.57925 * 20 19 18 46 46 H 1.09001 * 109.47279 * 332.58256 * 20 19 18 47 47 H 0.97004 * 119.99932 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0016 6 7 3.5406 -1.2023 0.0035 7 6 2.2132 -1.2004 -0.0016 8 6 1.4767 -2.4860 -0.0022 9 8 0.2674 -2.4935 0.1165 10 7 2.1481 -3.6471 -0.1342 11 6 1.4198 -4.9183 -0.1354 12 6 2.3951 -6.0559 -0.2953 13 6 2.5257 -6.6878 -1.5181 14 6 3.4206 -7.7308 -1.6650 15 6 4.1883 -8.1394 -0.5903 16 6 4.0536 -7.5115 0.6337 17 6 3.1588 -6.4679 0.7805 18 6 3.0165 -5.7791 2.1134 19 7 3.8202 -6.4837 3.1154 20 6 3.2548 -7.6274 3.8355 21 6 5.0997 -6.0732 3.3789 22 1 5.4244 -5.0889 3.0750 23 6 5.9793 -6.9220 4.0366 24 7 5.7685 -8.2212 4.0307 25 14 7.4624 -6.2205 4.9296 26 1 7.1313 -6.0292 6.3645 27 1 8.6050 -7.1610 4.8064 28 1 7.8300 -4.9135 4.3279 29 1 -0.3634 -0.1033 1.0224 30 1 -0.3633 0.9371 -0.4217 31 1 -0.3634 -0.8339 -0.6006 32 1 1.6900 2.1415 0.0007 33 1 4.1721 2.0599 -0.0010 34 1 5.3114 -0.1250 -0.0025 35 1 3.1133 -3.6412 -0.2293 36 1 0.7093 -4.9294 -0.9620 37 1 0.8828 -5.0303 0.8066 38 1 1.9285 -6.3663 -2.3586 39 1 3.5229 -8.2241 -2.6203 40 1 4.8906 -8.9517 -0.7060 41 1 4.6505 -7.8333 1.4743 42 1 3.3627 -4.7491 2.0287 43 1 1.9696 -5.7868 2.4164 44 1 3.5070 -8.5484 3.3098 45 1 3.6659 -7.6607 4.8444 46 1 2.1710 -7.5241 3.8879 47 1 6.3830 -8.8143 4.4906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484555479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:42 Heat of formation + Delta-G solvation = 54.843851 kcal Electronic energy + Delta-G solvation = -29070.247155 eV Core-core repulsion = 25218.857592 eV Total energy + Delta-G solvation = -3851.389564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.85956 -39.40005 -38.53419 -35.54916 -35.04216 -33.58577 -32.35771 -31.88618 -30.84493 -29.85363 -27.75107 -26.44329 -25.89081 -25.43946 -24.25817 -22.36296 -22.13449 -20.86999 -20.73022 -19.91290 -18.18535 -16.93491 -16.71589 -16.13609 -15.69777 -15.66894 -15.48626 -15.03259 -14.82203 -14.48750 -14.03930 -13.82496 -13.64182 -13.50225 -13.33601 -13.13626 -12.89659 -12.84460 -12.63042 -12.41096 -12.26163 -12.12263 -12.11253 -11.56944 -11.30089 -10.87944 -10.76405 -10.49265 -10.40369 -10.27290 -10.13623 -10.02088 -10.00424 -9.81837 -9.52260 -9.25131 -8.83938 -8.52039 -8.26666 -7.98398 -6.88730 -5.78705 -3.15756 0.50540 1.00282 1.75721 2.04072 2.71912 3.26360 3.38724 3.46713 3.47291 3.71914 4.07286 4.40211 4.50608 4.54313 4.61934 4.71702 4.76661 5.01083 5.16746 5.28678 5.34002 5.36310 5.45165 5.48477 5.58942 5.63039 5.63714 5.78906 5.81852 5.85627 5.94126 6.05654 6.12785 6.31823 6.36551 6.42666 6.50050 6.55957 6.61693 6.73829 6.78851 6.95893 7.23440 7.35194 7.40177 7.48398 7.65911 7.73499 7.74812 7.82925 8.23408 8.33607 9.19713 9.83892 10.31595 11.27791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009587 B = 0.003639 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.881475 B = 7692.380425 C = 9380.495188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.147 4.147 5 C 0.092 3.908 6 N -0.450 5.450 7 C 0.075 3.925 8 C 0.569 3.431 9 O -0.534 6.534 10 N -0.698 5.698 11 C 0.166 3.834 12 C -0.128 4.128 13 C -0.114 4.114 14 C -0.141 4.141 15 C -0.120 4.120 16 C -0.086 4.086 17 C -0.075 4.075 18 C 0.181 3.819 19 N -0.598 5.598 20 C 0.159 3.841 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.897 3.103 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.161 0.839 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.026 0.974 45 H 0.047 0.953 46 H -0.001 1.001 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 14.019 -11.431 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.168 4.168 5 C -0.068 4.068 6 N -0.161 5.161 7 C -0.063 4.063 8 C 0.354 3.646 9 O -0.412 6.412 10 N -0.349 5.349 11 C 0.044 3.956 12 C -0.129 4.129 13 C -0.132 4.132 14 C -0.159 4.159 15 C -0.139 4.139 16 C -0.103 4.103 17 C -0.078 4.078 18 C 0.054 3.946 19 N -0.319 5.319 20 C 0.014 3.986 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.727 3.273 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.179 0.821 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.552 13.013 -11.226 18.772 hybrid contribution 1.195 1.037 0.371 1.625 sum -6.357 14.050 -10.856 18.859 Atomic orbital electron populations 1.21068 0.89013 1.03293 1.04034 1.20948 0.98417 0.92386 0.96050 1.21539 0.94174 0.98047 0.97762 1.22378 0.95276 0.99861 0.99236 1.22818 1.00621 0.87225 0.96150 1.67580 1.07042 1.32037 1.09405 1.21038 0.89905 0.93635 1.01770 1.17850 0.86514 0.83099 0.77127 1.90716 1.13196 1.86753 1.50548 1.45985 1.12151 1.04912 1.71820 1.20171 0.92838 0.80016 1.02586 1.19614 1.00210 0.98742 0.94323 1.20816 0.99246 0.97057 0.96120 1.20963 0.98053 0.98327 0.98525 1.21287 0.99101 0.99920 0.93548 1.21766 0.96744 0.93785 0.98045 1.21289 0.93934 0.95888 0.96695 1.19911 0.94678 0.95036 0.85001 1.44007 1.12236 1.34987 1.40716 1.20821 0.91312 0.89605 0.96818 1.19218 0.87704 0.97588 1.33772 0.91168 1.24797 0.97707 0.94878 1.02096 1.70105 1.38389 1.01164 1.45056 0.86342 0.82309 0.78290 0.80315 1.21650 1.21944 1.20492 0.90302 0.92368 0.88165 0.84267 0.84295 0.81988 0.74963 0.91046 0.90368 0.87063 0.87118 0.86867 0.82139 0.91933 0.93175 0.95531 0.93396 0.98220 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.77 36.00 0.32 -0.90 16 2 C -0.08 -0.86 5.93 -104.10 -0.62 -1.47 16 3 C -0.09 -0.79 9.83 -39.31 -0.39 -1.17 16 4 C -0.15 -1.21 10.12 -39.32 -0.40 -1.61 16 5 C 0.09 0.95 11.18 -17.56 -0.20 0.75 16 6 N -0.45 -6.02 9.56 -9.80 -0.09 -6.11 16 7 C 0.07 1.02 6.75 -83.01 -0.56 0.46 16 8 C 0.57 8.54 7.74 -12.19 -0.09 8.44 16 9 O -0.53 -8.67 13.31 5.35 0.07 -8.60 16 10 N -0.70 -10.26 5.36 -62.32 -0.33 -10.59 16 11 C 0.17 2.44 5.17 -5.19 -0.03 2.41 16 12 C -0.13 -2.07 5.25 -104.62 -0.55 -2.62 16 13 C -0.11 -1.70 9.67 -39.58 -0.38 -2.08 16 14 C -0.14 -2.16 10.05 -39.59 -0.40 -2.55 16 15 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 16 C -0.09 -1.77 9.17 -39.58 -0.36 -2.14 16 17 C -0.07 -1.43 5.87 -104.63 -0.61 -2.05 16 18 C 0.18 3.73 5.09 -5.19 -0.03 3.71 16 19 N -0.60 -14.52 1.75 -182.50 -0.32 -14.84 16 20 C 0.16 3.84 8.75 59.85 0.52 4.36 16 21 C -0.25 -6.73 8.95 -15.06 -0.13 -6.87 16 22 H 0.07 1.87 7.87 -52.48 -0.41 1.46 16 23 C 0.00 0.10 4.89 -17.43 -0.09 0.01 16 24 N -0.90 -25.13 10.94 55.49 0.61 -24.52 16 25 Si 0.90 21.51 29.61 -169.99 -5.03 16.47 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.10 1.22 5.80 -51.93 -0.30 0.92 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.41 6.21 7.81 -40.82 -0.32 5.89 16 36 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 37 H 0.08 1.20 7.03 -51.93 -0.36 0.84 16 38 H 0.11 1.39 8.02 -52.49 -0.42 0.97 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.16 3.98 5.95 -52.49 -0.31 3.67 16 42 H 0.06 1.30 7.82 -51.93 -0.41 0.89 16 43 H 0.05 0.98 7.08 -51.93 -0.37 0.62 16 44 H 0.03 0.68 7.26 -51.93 -0.38 0.30 16 45 H 0.05 1.24 7.02 -51.93 -0.36 0.88 16 46 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -29.99 387.40 -10.21 -40.20 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.56 Total: 7.99 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.39 Total: -5.84 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.14 Total: -56.07 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.99 -10.21 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484555479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.046 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds