Wall clock time and date at job start Tue Mar 31 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38626 * 120.47005 * 2 1 4 4 C 1.38581 * 118.49387 * 180.02562 * 3 2 1 5 5 C 1.38609 * 119.34524 * 0.02562 * 4 3 2 6 6 N 1.31491 * 120.90231 * 359.71718 * 5 4 3 7 7 C 1.32744 * 121.64396 * 0.57639 * 6 5 4 8 8 C 1.48159 * 119.72573 * 179.70579 * 7 6 5 9 9 O 1.21517 * 120.00519 * 173.27494 * 8 7 6 10 10 N 1.34778 * 119.99829 * 353.27582 * 8 7 6 11 11 C 1.46501 * 120.00042 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47309 * 180.02562 * 11 10 8 13 13 C 1.38267 * 119.99760 * 257.00688 * 12 11 10 14 14 C 1.38207 * 119.99910 * 179.97438 * 13 12 11 15 15 C 1.38254 * 120.00161 * 359.78784 * 14 13 12 16 16 C 1.38224 * 119.99732 * 0.49037 * 15 14 13 17 17 C 1.38207 * 120.00255 * 77.02606 * 12 11 10 18 18 C 1.50705 * 120.00067 * 359.97438 * 17 12 11 19 19 N 1.46501 * 109.47042 * 174.09132 * 18 17 12 20 20 C 1.46501 * 119.99683 * 273.67411 * 19 18 17 21 21 C 1.36933 * 120.00180 * 93.67487 * 19 18 17 22 22 H 1.08011 * 119.99705 * 17.38142 * 21 19 18 23 23 C 1.38810 * 120.00216 * 197.37706 * 21 19 18 24 24 N 1.31615 * 119.99822 * 21.79118 * 23 21 19 25 25 Si 1.86794 * 120.00031 * 201.78037 * 23 21 19 26 26 H 1.48497 * 109.47064 * 94.99629 * 25 23 21 27 27 H 1.48502 * 109.47247 * 214.99536 * 25 23 21 28 28 H 1.48503 * 109.47445 * 334.99416 * 25 23 21 29 29 H 1.08999 * 109.47232 * 264.23296 * 1 2 3 30 30 H 1.08999 * 109.47237 * 24.22837 * 1 2 3 31 31 H 1.09003 * 109.47461 * 144.23378 * 1 2 3 32 32 H 1.08008 * 120.75713 * 0.04392 * 3 2 1 33 33 H 1.08002 * 120.33028 * 179.97438 * 4 3 2 34 34 H 1.08007 * 119.54668 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00162 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47406 * 59.99711 * 11 10 8 37 37 H 1.09006 * 109.47266 * 300.00192 * 11 10 8 38 38 H 1.07998 * 119.99842 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00099 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.00688 * 180.25375 * 15 14 13 41 41 H 1.07997 * 119.99703 * 179.75998 * 16 15 14 42 42 H 1.08994 * 109.46608 * 294.09082 * 18 17 12 43 43 H 1.08997 * 109.47109 * 54.08926 * 18 17 12 44 44 H 1.08998 * 109.47075 * 92.58462 * 20 19 18 45 45 H 1.08999 * 109.46758 * 212.57925 * 20 19 18 46 46 H 1.09001 * 109.47279 * 332.58256 * 20 19 18 47 47 H 0.97004 * 119.99932 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0016 6 7 3.5406 -1.2023 0.0035 7 6 2.2132 -1.2004 -0.0016 8 6 1.4767 -2.4860 -0.0022 9 8 0.2674 -2.4935 0.1165 10 7 2.1481 -3.6471 -0.1342 11 6 1.4198 -4.9183 -0.1354 12 6 2.3951 -6.0559 -0.2953 13 6 2.5257 -6.6878 -1.5181 14 6 3.4206 -7.7308 -1.6650 15 6 4.1883 -8.1394 -0.5903 16 6 4.0536 -7.5115 0.6337 17 6 3.1588 -6.4679 0.7805 18 6 3.0165 -5.7791 2.1134 19 7 3.8202 -6.4837 3.1154 20 6 3.2548 -7.6274 3.8355 21 6 5.0997 -6.0732 3.3789 22 1 5.4244 -5.0889 3.0750 23 6 5.9793 -6.9220 4.0366 24 7 5.7685 -8.2212 4.0307 25 14 7.4624 -6.2205 4.9296 26 1 7.1313 -6.0292 6.3645 27 1 8.6050 -7.1610 4.8064 28 1 7.8300 -4.9135 4.3279 29 1 -0.3634 -0.1033 1.0224 30 1 -0.3633 0.9371 -0.4217 31 1 -0.3634 -0.8339 -0.6006 32 1 1.6900 2.1415 0.0007 33 1 4.1721 2.0599 -0.0010 34 1 5.3114 -0.1250 -0.0025 35 1 3.1133 -3.6412 -0.2293 36 1 0.7093 -4.9294 -0.9620 37 1 0.8828 -5.0303 0.8066 38 1 1.9285 -6.3663 -2.3586 39 1 3.5229 -8.2241 -2.6203 40 1 4.8906 -8.9517 -0.7060 41 1 4.6505 -7.8333 1.4743 42 1 3.3627 -4.7491 2.0287 43 1 1.9696 -5.7868 2.4164 44 1 3.5070 -8.5484 3.3098 45 1 3.6659 -7.6607 4.8444 46 1 2.1710 -7.5241 3.8879 47 1 6.3830 -8.8143 4.4906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484555479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:41 Heat of formation + Delta-G solvation = 38.726667 kcal Electronic energy + Delta-G solvation = -29070.946049 eV Core-core repulsion = 25218.857592 eV Total energy + Delta-G solvation = -3852.088457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77741 -40.65094 -39.69084 -37.39298 -36.19424 -34.45648 -33.74595 -33.16763 -32.11646 -31.49394 -28.67278 -28.07717 -27.60015 -26.86611 -25.18899 -23.87183 -23.16294 -22.25725 -21.83828 -21.40441 -19.19897 -18.73035 -17.84977 -17.38254 -17.00527 -16.65625 -16.61014 -16.38635 -16.04184 -15.83452 -15.52522 -15.33349 -14.90493 -14.77055 -14.60560 -14.45052 -14.03988 -13.98427 -13.67626 -13.63136 -13.51286 -13.32308 -13.20014 -13.05067 -12.90600 -12.80335 -12.57190 -12.33908 -12.03565 -11.95747 -11.80380 -11.62503 -11.11450 -10.76416 -10.58658 -10.43518 -10.23231 -9.84844 -9.62259 -9.39890 -8.89411 -7.85316 -5.24192 -0.32575 0.25971 0.40812 0.66578 1.45086 1.47804 1.55523 1.72234 2.17881 2.51560 2.85540 3.00692 3.23907 3.28522 3.63631 3.73802 3.81115 3.88107 3.99092 4.06454 4.07144 4.19777 4.37681 4.39403 4.49622 4.56659 4.61558 4.72094 4.75167 4.79653 4.80186 4.80971 4.82595 5.02823 5.10853 5.16983 5.21592 5.27601 5.28922 5.37406 5.46037 5.57715 5.64305 5.67864 5.71124 5.84585 5.97816 6.26069 6.32085 6.40309 6.82199 7.12623 7.13715 7.84910 8.28918 9.19573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009587 B = 0.003639 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.881475 B = 7692.380425 C = 9380.495188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.076 3.924 6 N -0.481 5.481 7 C 0.041 3.959 8 C 0.565 3.435 9 O -0.554 6.554 10 N -0.699 5.699 11 C 0.172 3.828 12 C -0.118 4.118 13 C -0.104 4.104 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.090 4.090 18 C 0.187 3.813 19 N -0.608 5.608 20 C 0.175 3.825 21 C -0.257 4.257 22 H 0.065 0.935 23 C -0.043 4.043 24 N -0.926 5.926 25 Si 0.955 3.045 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.005 0.995 45 H 0.023 0.977 46 H 0.024 0.976 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 16.692 -13.536 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.111 4.111 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.193 5.193 7 C -0.095 4.095 8 C 0.351 3.649 9 O -0.434 6.434 10 N -0.349 5.349 11 C 0.049 3.951 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.133 4.133 17 C -0.093 4.093 18 C 0.061 3.939 19 N -0.330 5.330 20 C 0.030 3.970 21 C -0.387 4.387 22 H 0.083 0.917 23 C -0.238 4.238 24 N -0.573 5.573 25 Si 0.785 3.215 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.196 1.196 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.247 0.753 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.041 0.959 46 H 0.043 0.957 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.951 15.702 -13.347 22.089 hybrid contribution 1.299 0.300 0.931 1.626 sum -6.652 16.001 -12.416 21.318 Atomic orbital electron populations 1.20993 0.88678 1.03951 1.03285 1.21181 0.98886 0.92739 0.96026 1.21977 0.94586 0.98337 0.96236 1.22811 0.95365 1.00442 0.96358 1.23332 1.01655 0.87486 0.95906 1.67495 1.07175 1.33954 1.10635 1.20916 0.90376 0.93542 1.04689 1.18202 0.86465 0.83738 0.76468 1.90698 1.13950 1.87189 1.51517 1.45959 1.11935 1.04965 1.72005 1.20122 0.92555 0.79630 1.02784 1.19681 0.99388 0.98848 0.93984 1.21229 0.98699 0.95970 0.96347 1.21327 0.96447 0.97761 0.98997 1.21399 0.99942 1.00093 0.93215 1.21432 0.97946 0.95820 0.98125 1.20973 0.95323 0.96230 0.96783 1.19881 0.94350 0.94391 0.85306 1.44116 1.11956 1.35013 1.41924 1.20555 0.92431 0.88966 0.95027 1.19367 0.88700 0.97218 1.33392 0.91719 1.25435 1.00217 0.95149 1.03041 1.70247 1.39254 1.01993 1.45789 0.85424 0.79423 0.77768 0.78931 1.21747 1.22233 1.19635 0.91129 0.89401 0.90324 0.80741 0.80315 0.80091 0.75264 0.89250 0.91446 0.83451 0.83397 0.86139 0.86826 0.92559 0.92384 0.97679 0.95857 0.95725 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 8.77 71.23 0.62 -1.59 16 2 C -0.09 -1.83 5.93 -19.52 -0.12 -1.95 16 3 C -0.09 -1.23 9.83 22.44 0.22 -1.00 16 4 C -0.13 -1.68 10.12 22.44 0.23 -1.45 16 5 C 0.08 1.43 11.18 84.83 0.95 2.38 16 6 N -0.48 -12.70 9.56 -184.91 -1.77 -14.46 16 7 C 0.04 1.12 6.75 41.89 0.28 1.41 16 8 C 0.56 17.16 7.74 86.88 0.67 17.84 16 9 O -0.55 -18.26 13.31 -3.77 -0.05 -18.31 16 10 N -0.70 -20.60 5.36 -469.38 -2.51 -23.12 16 11 C 0.17 4.91 5.17 85.63 0.44 5.35 16 12 C -0.12 -3.70 5.25 -19.86 -0.10 -3.81 16 13 C -0.10 -2.80 9.67 22.27 0.22 -2.59 16 14 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 15 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 16 C -0.11 -4.93 9.17 22.27 0.20 -4.73 16 17 C -0.09 -3.52 5.87 -19.87 -0.12 -3.64 16 18 C 0.19 7.96 5.09 85.63 0.44 8.39 16 19 N -0.61 -30.77 1.75 -731.30 -1.28 -32.05 16 20 C 0.18 8.83 8.75 127.77 1.12 9.95 16 21 C -0.26 -14.14 8.95 84.03 0.75 -13.39 16 22 H 0.06 3.56 7.87 -2.90 -0.02 3.54 16 23 C -0.04 -2.37 4.89 84.86 0.42 -1.95 16 24 N -0.93 -53.89 10.94 21.65 0.24 -53.66 16 25 Si 0.96 45.33 29.61 68.60 2.03 47.36 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 31 H 0.08 1.91 5.80 -2.39 -0.01 1.90 16 32 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 33 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.41 12.54 7.81 -92.71 -0.72 11.81 16 36 H 0.09 2.24 7.97 -2.38 -0.02 2.22 16 37 H 0.07 2.08 7.03 -2.38 -0.02 2.06 16 38 H 0.15 2.98 8.02 -2.91 -0.02 2.96 16 39 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.11 6.02 5.95 -2.91 -0.02 6.00 16 42 H 0.06 2.43 7.82 -2.39 -0.02 2.41 16 43 H 0.06 2.33 7.08 -2.39 -0.02 2.31 16 44 H 0.00 0.27 7.26 -2.39 -0.02 0.25 16 45 H 0.02 1.25 7.02 -2.39 -0.02 1.23 16 46 H 0.02 1.08 7.90 -2.39 -0.02 1.06 16 47 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -69.19 387.40 3.60 -65.60 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.27 Total: 27.02 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.67 Total: 1.62 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.32 Total: -123.29 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.19 3.60 -65.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484555479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.323 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds