Wall clock time and date at job start Tue Mar 31 2020 22:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36546 * 120.87600 * 2 1 4 4 C 1.40232 * 119.81573 * 179.97438 * 3 2 1 5 5 C 1.48278 * 119.23784 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99864 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99685 * 179.97438 * 5 4 3 8 8 C 1.47019 * 125.65277 * 359.97438 * 7 5 4 9 9 C 1.54321 * 107.27531 * 178.97403 * 8 7 5 10 10 C 1.55157 * 103.10033 * 337.71659 * 9 8 7 11 11 H 1.09001 * 111.00741 * 277.51995 * 10 9 8 12 12 C 1.53000 * 111.00230 * 153.66249 * 10 9 8 13 13 N 1.46508 * 109.46807 * 175.00251 * 12 10 9 14 14 C 1.36936 * 119.99805 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00064 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47490 * 89.99849 * 18 16 14 20 20 H 1.48504 * 109.46997 * 210.00062 * 18 16 14 21 21 H 1.48494 * 109.47200 * 329.99387 * 18 16 14 22 22 C 1.47431 * 125.64579 * 180.02562 * 7 5 4 23 23 N 1.31912 * 121.52239 * 0.27220 * 4 3 2 24 24 C 1.33234 * 121.29388 * 359.44619 * 23 4 3 25 25 C 1.40835 * 120.99193 * 180.27941 * 24 23 4 26 26 C 1.35993 * 119.73878 * 180.31787 * 25 24 23 27 27 C 1.39450 * 121.08773 * 359.94723 * 26 25 24 28 28 C 1.36123 * 120.91518 * 0.02868 * 27 26 25 29 29 C 1.40423 * 119.65139 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46521 * 90.00005 * 1 2 3 31 31 H 1.08997 * 109.46702 * 210.00062 * 1 2 3 32 32 H 1.08998 * 109.47163 * 330.00056 * 1 2 3 33 33 H 1.07998 * 120.08940 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.88251 * 59.55144 * 8 7 5 35 35 H 1.09004 * 109.88394 * 298.39057 * 8 7 5 36 36 H 1.09002 * 110.72109 * 96.17040 * 9 8 7 37 37 H 1.09003 * 110.72356 * 219.26865 * 9 8 7 38 38 H 1.08995 * 109.47545 * 294.99634 * 12 10 9 39 39 H 1.08993 * 109.47160 * 55.00331 * 12 10 9 40 40 H 0.96996 * 120.00322 * 359.97438 * 13 12 10 41 41 H 0.96998 * 119.99684 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.36190 * 322.93058 * 22 7 5 43 43 H 1.08998 * 110.36491 * 85.14737 * 22 7 5 44 44 H 1.08004 * 120.13226 * 0.26924 * 25 24 23 45 45 H 1.07997 * 119.46293 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.53593 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.17537 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 0.0000 6 8 3.7559 3.4816 -0.0005 7 7 5.7057 2.4192 0.0010 8 6 6.5563 1.2201 0.0033 9 6 8.0232 1.6987 -0.0227 10 6 7.9156 3.1303 -0.6111 11 1 7.8622 3.1025 -1.6994 12 6 9.0811 4.0044 -0.1435 13 7 9.0127 5.3071 -0.8104 14 6 9.9587 6.2615 -0.5472 15 1 10.7551 6.0540 0.1523 16 6 9.8937 7.4959 -1.1786 17 7 8.9229 7.7489 -2.0307 18 14 11.1846 8.7976 -0.8201 19 1 12.3151 8.6489 -1.7714 20 1 10.5830 10.1467 -0.9731 21 1 11.6818 8.6322 0.5693 22 6 6.5711 3.6127 0.0011 23 7 4.2786 0.0090 -0.0043 24 6 3.6481 -1.1648 0.0011 25 6 4.3686 -2.3749 0.0018 26 6 3.6990 -3.5586 0.0008 27 6 2.3050 -3.5973 0.0002 28 6 1.5735 -2.4494 0.0001 29 6 2.2293 -1.2077 0.0010 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6836 2.1162 -0.0004 34 1 6.3478 0.6160 -0.8798 35 1 6.3726 0.6369 0.9057 36 1 8.4378 1.7260 0.9850 37 1 8.6258 1.0605 -0.6689 38 1 9.0197 4.1451 0.9356 39 1 10.0236 3.5173 -0.3934 40 1 8.2977 5.4933 -1.4389 41 1 8.8772 8.6117 -2.4716 42 1 6.1342 4.3981 -0.6156 43 1 6.7231 3.9710 1.0193 44 1 5.4485 -2.3630 0.0023 45 1 4.2559 -4.4839 0.0009 46 1 1.7990 -4.5514 -0.0001 47 1 0.4944 -2.4933 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491814699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:03 Heat of formation + Delta-G solvation = 38.507838 kcal Electronic energy + Delta-G solvation = -28318.875583 eV Core-core repulsion = 24466.777637 eV Total energy + Delta-G solvation = -3852.097946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42696 -39.78927 -37.78962 -37.01566 -35.21650 -34.54279 -32.24256 -31.08152 -30.74758 -30.27382 -28.66262 -28.14663 -26.13946 -24.51068 -23.90296 -23.21294 -21.99136 -21.47379 -20.13369 -19.69110 -18.32814 -18.01719 -17.17683 -16.82145 -16.10027 -15.88589 -15.47013 -15.11223 -14.87618 -14.55928 -14.51810 -14.30763 -13.75002 -13.57836 -13.48391 -13.37178 -13.28032 -13.11227 -12.65288 -12.58621 -12.56390 -12.18991 -12.00182 -11.94394 -11.77170 -11.60181 -11.21436 -10.82445 -10.63751 -10.56700 -10.52930 -10.34103 -10.26851 -9.97089 -9.65482 -9.58258 -9.16010 -8.84034 -8.59509 -8.46616 -6.88586 -5.71895 -3.01107 -0.13720 0.34285 1.57252 2.17652 2.92936 3.08364 3.46991 3.51736 3.53896 3.75599 3.80052 4.09168 4.25082 4.36631 4.43519 4.60952 4.68305 4.75778 4.79728 4.86727 4.96779 4.99361 5.09523 5.12885 5.14710 5.31159 5.49615 5.50641 5.58191 5.61469 5.63453 5.67572 5.70592 5.91521 5.96749 5.97830 6.03914 6.06378 6.11689 6.14379 6.17844 6.32369 6.40222 6.43814 6.52711 6.74528 6.88118 7.38310 7.59129 7.73665 8.15260 8.46455 9.57577 10.15022 10.49458 11.50854 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002165 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.687519 B =12927.702891 C =13941.650567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.128 4.128 4 C 0.130 3.870 5 C 0.575 3.425 6 O -0.531 6.531 7 N -0.595 5.595 8 C 0.119 3.881 9 C -0.131 4.131 10 C -0.104 4.104 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.113 3.887 23 N -0.441 5.441 24 C 0.125 3.875 25 C -0.084 4.084 26 C -0.105 4.105 27 C -0.111 4.111 28 C -0.102 4.102 29 C -0.088 4.088 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 -27.426 4.871 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.148 4.148 4 C -0.023 4.023 5 C 0.361 3.639 6 O -0.407 6.407 7 N -0.327 5.327 8 C -0.003 4.003 9 C -0.170 4.170 10 C -0.124 4.124 11 H 0.104 0.896 12 C 0.037 3.963 13 N -0.378 5.378 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.008 4.008 23 N -0.154 5.154 24 C 0.001 3.999 25 C -0.103 4.103 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.120 4.120 29 C -0.090 4.090 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.095 -26.815 4.944 31.663 hybrid contribution -0.357 0.758 -0.083 0.842 sum -16.452 -26.057 4.861 31.197 Atomic orbital electron populations 1.20879 0.89440 1.03806 1.03369 1.20138 0.96926 0.91629 0.95257 1.21626 0.93574 0.99773 0.99847 1.21322 0.91576 0.92138 0.97275 1.17521 0.80996 0.87317 0.78029 1.90815 1.67783 1.31205 1.50870 1.48390 1.04424 1.09706 1.70138 1.22106 0.88851 0.86845 1.02544 1.22766 0.95341 0.96719 1.02158 1.22666 0.94665 0.94312 1.00747 0.89644 1.20585 0.93658 0.86566 0.95463 1.42384 1.32985 1.10494 1.51909 1.19213 1.04448 0.93002 1.20457 0.91163 1.24757 0.98660 0.97990 0.99635 1.69665 1.33246 1.23316 1.31827 0.86184 0.80867 0.81413 0.77683 1.21769 1.21796 1.20778 1.22518 0.89204 0.87220 1.01847 1.68154 1.39143 0.97263 1.10802 1.18921 0.89749 0.92222 0.98977 1.20889 1.00617 0.89913 0.98849 1.20943 0.94457 0.98121 0.99000 1.20994 0.94192 0.98557 0.99133 1.21026 1.00177 0.91121 0.99704 1.18845 0.94010 0.94298 1.01856 0.89971 0.90655 0.90279 0.83164 0.90783 0.90998 0.90521 0.90082 0.95995 0.95750 0.78209 0.93501 0.89697 0.90787 0.84327 0.85095 0.85422 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.59 36.01 0.35 -0.34 16 2 C -0.03 -0.30 5.92 -104.29 -0.62 -0.91 16 3 C -0.13 -1.50 9.23 -39.44 -0.36 -1.87 16 4 C 0.13 1.80 6.72 -82.96 -0.56 1.25 16 5 C 0.58 9.56 7.84 -12.13 -0.10 9.46 16 6 O -0.53 -10.36 16.54 5.37 0.09 -10.28 16 7 N -0.59 -9.38 3.33 -171.15 -0.57 -9.95 16 8 C 0.12 1.52 5.39 -3.07 -0.02 1.50 16 9 C -0.13 -1.64 6.40 -24.90 -0.16 -1.80 16 10 C -0.10 -1.71 3.07 -88.20 -0.27 -1.98 16 11 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 12 C 0.17 3.28 5.73 -4.04 -0.02 3.26 16 13 N -0.73 -18.78 5.56 -59.91 -0.33 -19.11 16 14 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 18 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.11 1.97 6.35 -2.26 -0.01 1.96 16 23 N -0.44 -5.58 6.76 -7.54 -0.05 -5.63 16 24 C 0.12 1.36 6.61 -84.86 -0.56 0.80 16 25 C -0.08 -0.71 9.99 -39.41 -0.39 -1.10 16 26 C -0.11 -0.66 9.94 -39.94 -0.40 -1.06 16 27 C -0.11 -0.65 9.96 -39.89 -0.40 -1.05 16 28 C -0.10 -0.70 9.31 -39.52 -0.37 -1.07 16 29 C -0.09 -0.85 5.75 -106.72 -0.61 -1.46 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.32 6.51 -51.93 -0.34 -0.02 16 32 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.15 1.70 7.60 -52.49 -0.40 1.31 16 34 H 0.07 0.92 7.39 -51.93 -0.38 0.54 16 35 H 0.07 0.87 7.54 -51.93 -0.39 0.47 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 43 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 47 H 0.13 0.59 6.43 -52.49 -0.34 0.26 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.48 385.49 -10.85 -45.33 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.75 Total: 6.03 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.75 Total: -1.88 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.23 Total: -62.78 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.48 -10.85 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491814699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.842 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds