Wall clock time and date at job start Tue Mar 31 2020 22:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36546 * 120.87600 * 2 1 4 4 C 1.40232 * 119.81573 * 179.97438 * 3 2 1 5 5 C 1.48278 * 119.23784 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99864 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99685 * 179.97438 * 5 4 3 8 8 C 1.47019 * 125.65277 * 359.97438 * 7 5 4 9 9 C 1.54321 * 107.27531 * 178.97403 * 8 7 5 10 10 C 1.55157 * 103.10033 * 337.71659 * 9 8 7 11 11 H 1.09001 * 111.00741 * 277.51995 * 10 9 8 12 12 C 1.53000 * 111.00230 * 153.66249 * 10 9 8 13 13 N 1.46508 * 109.46807 * 175.00251 * 12 10 9 14 14 C 1.36936 * 119.99805 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00064 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47490 * 89.99849 * 18 16 14 20 20 H 1.48504 * 109.46997 * 210.00062 * 18 16 14 21 21 H 1.48494 * 109.47200 * 329.99387 * 18 16 14 22 22 C 1.47431 * 125.64579 * 180.02562 * 7 5 4 23 23 N 1.31912 * 121.52239 * 0.27220 * 4 3 2 24 24 C 1.33234 * 121.29388 * 359.44619 * 23 4 3 25 25 C 1.40835 * 120.99193 * 180.27941 * 24 23 4 26 26 C 1.35993 * 119.73878 * 180.31787 * 25 24 23 27 27 C 1.39450 * 121.08773 * 359.94723 * 26 25 24 28 28 C 1.36123 * 120.91518 * 0.02868 * 27 26 25 29 29 C 1.40423 * 119.65139 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46521 * 90.00005 * 1 2 3 31 31 H 1.08997 * 109.46702 * 210.00062 * 1 2 3 32 32 H 1.08998 * 109.47163 * 330.00056 * 1 2 3 33 33 H 1.07998 * 120.08940 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.88251 * 59.55144 * 8 7 5 35 35 H 1.09004 * 109.88394 * 298.39057 * 8 7 5 36 36 H 1.09002 * 110.72109 * 96.17040 * 9 8 7 37 37 H 1.09003 * 110.72356 * 219.26865 * 9 8 7 38 38 H 1.08995 * 109.47545 * 294.99634 * 12 10 9 39 39 H 1.08993 * 109.47160 * 55.00331 * 12 10 9 40 40 H 0.96996 * 120.00322 * 359.97438 * 13 12 10 41 41 H 0.96998 * 119.99684 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.36190 * 322.93058 * 22 7 5 43 43 H 1.08998 * 110.36491 * 85.14737 * 22 7 5 44 44 H 1.08004 * 120.13226 * 0.26924 * 25 24 23 45 45 H 1.07997 * 119.46293 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.53593 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.17537 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 0.0000 6 8 3.7559 3.4816 -0.0005 7 7 5.7057 2.4192 0.0010 8 6 6.5563 1.2201 0.0033 9 6 8.0232 1.6987 -0.0227 10 6 7.9156 3.1303 -0.6111 11 1 7.8622 3.1025 -1.6994 12 6 9.0811 4.0044 -0.1435 13 7 9.0127 5.3071 -0.8104 14 6 9.9587 6.2615 -0.5472 15 1 10.7551 6.0540 0.1523 16 6 9.8937 7.4959 -1.1786 17 7 8.9229 7.7489 -2.0307 18 14 11.1846 8.7976 -0.8201 19 1 12.3151 8.6489 -1.7714 20 1 10.5830 10.1467 -0.9731 21 1 11.6818 8.6322 0.5693 22 6 6.5711 3.6127 0.0011 23 7 4.2786 0.0090 -0.0043 24 6 3.6481 -1.1648 0.0011 25 6 4.3686 -2.3749 0.0018 26 6 3.6990 -3.5586 0.0008 27 6 2.3050 -3.5973 0.0002 28 6 1.5735 -2.4494 0.0001 29 6 2.2293 -1.2077 0.0010 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6836 2.1162 -0.0004 34 1 6.3478 0.6160 -0.8798 35 1 6.3726 0.6369 0.9057 36 1 8.4378 1.7260 0.9850 37 1 8.6258 1.0605 -0.6689 38 1 9.0197 4.1451 0.9356 39 1 10.0236 3.5173 -0.3934 40 1 8.2977 5.4933 -1.4389 41 1 8.8772 8.6117 -2.4716 42 1 6.1342 4.3981 -0.6156 43 1 6.7231 3.9710 1.0193 44 1 5.4485 -2.3630 0.0023 45 1 4.2559 -4.4839 0.0009 46 1 1.7990 -4.5514 -0.0001 47 1 0.4944 -2.4933 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491814699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:02 Heat of formation + Delta-G solvation = 17.383090 kcal Electronic energy + Delta-G solvation = -28319.791621 eV Core-core repulsion = 24466.777637 eV Total energy + Delta-G solvation = -3853.013984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23359 -40.94492 -39.00125 -37.85645 -36.51105 -35.80547 -33.93814 -32.25316 -31.63220 -31.27509 -30.03357 -28.79735 -27.57696 -25.91969 -24.69331 -24.46921 -23.42656 -22.21667 -21.48220 -20.82069 -19.23622 -19.05242 -18.74109 -17.93797 -17.35959 -16.97760 -16.62931 -16.37325 -15.92798 -15.56063 -15.43023 -15.27024 -15.11867 -15.09661 -14.65145 -14.36887 -14.19620 -14.02602 -13.92825 -13.81793 -13.53846 -13.13176 -13.02413 -13.01023 -12.75186 -12.70912 -12.57741 -12.35392 -12.22619 -12.11815 -11.88970 -11.66571 -11.61806 -11.44526 -11.20873 -10.94344 -10.52252 -9.95765 -9.69528 -9.20743 -9.00489 -7.94665 -5.24251 -0.88521 -0.37586 0.90497 1.29423 1.46691 1.49302 1.57669 1.73412 2.15504 2.56014 2.83691 3.04591 3.35727 3.40360 3.50742 3.60332 3.65060 3.72185 3.80962 3.85882 4.10075 4.18778 4.21960 4.31340 4.32930 4.44630 4.47637 4.50250 4.58288 4.63482 4.69487 4.72824 4.82780 4.91921 4.94023 4.99831 5.02600 5.08449 5.09425 5.14048 5.18206 5.26088 5.40894 5.41485 5.46158 5.50271 5.52166 5.86977 6.26831 6.31723 6.54742 6.91208 7.32726 8.08670 8.30831 9.29147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002165 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.687519 B =12927.702891 C =13941.650567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 C -0.152 4.152 4 C 0.103 3.897 5 C 0.568 3.432 6 O -0.576 6.576 7 N -0.597 5.597 8 C 0.125 3.875 9 C -0.116 4.116 10 C -0.095 4.095 11 H 0.076 0.924 12 C 0.165 3.835 13 N -0.749 5.749 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.081 4.081 17 N -0.973 5.973 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.267 1.267 22 C 0.117 3.883 23 N -0.448 5.448 24 C 0.099 3.901 25 C -0.103 4.103 26 C -0.092 4.092 27 C -0.101 4.101 28 C -0.106 4.106 29 C -0.100 4.100 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -31.841 5.739 36.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.173 4.173 4 C -0.048 4.048 5 C 0.356 3.644 6 O -0.455 6.455 7 N -0.328 5.328 8 C 0.003 3.997 9 C -0.154 4.154 10 C -0.114 4.114 11 H 0.094 0.906 12 C 0.039 3.961 13 N -0.391 5.391 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.273 4.273 17 N -0.624 5.624 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.192 1.192 22 C -0.005 4.005 23 N -0.161 5.161 24 C -0.024 4.024 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.102 4.102 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.164 0.836 45 H 0.180 0.820 46 H 0.181 0.819 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.241 -31.294 5.844 35.739 hybrid contribution -0.371 1.850 -0.322 1.914 sum -16.612 -29.444 5.522 34.255 Atomic orbital electron populations 1.21000 0.86700 1.05128 1.04527 1.20525 0.98724 0.90691 0.92992 1.21607 0.92960 1.00613 1.02139 1.20904 0.92068 0.91253 1.00609 1.18115 0.81160 0.88149 0.76970 1.90761 1.68707 1.33102 1.52978 1.48491 1.04520 1.10023 1.69768 1.22222 0.88341 0.85715 1.03386 1.22776 0.95534 0.93884 1.03208 1.22480 0.92499 0.96289 1.00155 0.90600 1.20749 0.95506 0.84746 0.95115 1.42646 1.32128 1.12282 1.52077 1.19674 1.04622 0.93559 1.19618 0.90174 1.25648 1.01054 1.00463 1.00145 1.69845 1.35472 1.23564 1.33470 0.85087 0.78181 0.78036 0.78144 1.21186 1.22492 1.19204 1.22301 0.90168 0.87403 1.00657 1.68007 1.39599 0.97483 1.10984 1.19380 0.90975 0.92243 0.99851 1.21094 1.01235 0.89763 1.00099 1.21390 0.95099 0.98423 0.96269 1.21491 0.94097 0.99721 0.96564 1.21376 1.01754 0.90108 0.99181 1.19155 0.93738 0.95560 1.01738 0.88659 0.88257 0.90044 0.84094 0.90216 0.89825 0.89101 0.87352 0.95558 0.94413 0.79711 0.94109 0.93356 0.91550 0.83638 0.81983 0.81859 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.59 71.24 0.68 -0.45 16 2 C -0.02 -0.39 5.92 -19.65 -0.12 -0.51 16 3 C -0.15 -3.85 9.23 22.36 0.21 -3.64 16 4 C 0.10 3.07 6.72 42.29 0.28 3.35 16 5 C 0.57 20.57 7.84 86.91 0.68 21.25 16 6 O -0.58 -24.92 16.54 -3.71 -0.06 -24.98 16 7 N -0.60 -19.96 3.33 -813.71 -2.71 -22.67 16 8 C 0.12 3.14 5.39 86.73 0.47 3.61 16 9 C -0.12 -2.70 6.40 31.78 0.20 -2.50 16 10 C -0.09 -3.14 3.07 -9.23 -0.03 -3.17 16 11 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 12 C 0.17 6.57 5.73 86.38 0.49 7.06 16 13 N -0.75 -39.35 5.56 -343.45 -1.91 -41.25 16 14 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 17 N -0.97 -62.16 13.06 21.65 0.28 -61.87 16 18 Si 0.98 47.51 29.55 68.60 2.03 49.53 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C 0.12 4.36 6.35 87.03 0.55 4.92 16 23 N -0.45 -11.54 6.76 -177.78 -1.20 -12.74 16 24 C 0.10 2.08 6.61 40.49 0.27 2.35 16 25 C -0.10 -1.51 9.99 22.38 0.22 -1.28 16 26 C -0.09 -0.78 9.94 22.04 0.22 -0.56 16 27 C -0.10 -0.70 9.96 22.07 0.22 -0.48 16 28 C -0.11 -1.06 9.31 22.31 0.21 -0.85 16 29 C -0.10 -1.76 5.75 -21.22 -0.12 -1.88 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.48 6.51 -2.39 -0.02 0.47 16 32 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.14 3.63 7.60 -2.91 -0.02 3.61 16 34 H 0.08 1.94 7.39 -2.39 -0.02 1.92 16 35 H 0.08 1.94 7.54 -2.38 -0.02 1.93 16 36 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.37 21.17 7.67 -92.71 -0.71 20.46 16 41 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 43 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 44 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 45 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 47 H 0.16 0.65 6.43 -2.91 -0.02 0.63 16 Total: -1.00 -79.70 385.49 2.46 -77.23 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.28 Total: 26.98 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.75 Total: 9.77 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -5.53 Total: -138.53 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -79.70 2.46 -77.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491814699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.615 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds