Wall clock time and date at job start Tue Mar 31 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39436 * 119.54273 * 2 1 4 4 C 1.35994 * 121.08435 * 180.02562 * 3 2 1 5 5 C 1.40821 * 119.73512 * 359.97118 * 4 3 2 6 6 N 1.33271 * 120.97794 * 180.25583 * 5 4 3 7 7 C 1.31878 * 121.29909 * 180.25723 * 6 5 4 8 8 C 1.48278 * 119.24075 * 179.75333 * 7 6 5 9 9 O 1.21499 * 119.99944 * 179.72665 * 8 7 6 10 10 N 1.34779 * 120.00033 * 359.73528 * 8 7 6 11 11 C 1.46500 * 119.99636 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.47043 * 179.97438 * 11 10 8 13 13 N 1.46494 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.36937 * 119.99733 * 269.99698 * 13 12 11 15 15 H 1.08006 * 119.99769 * 144.92514 * 14 13 12 16 16 C 1.38812 * 120.00451 * 324.93178 * 14 13 12 17 17 N 1.31617 * 119.99621 * 337.93125 * 16 14 13 18 18 Si 1.86790 * 120.00196 * 157.93616 * 16 14 13 19 19 H 1.48499 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47436 * 119.99959 * 18 16 14 21 21 H 1.48501 * 109.47116 * 239.99678 * 18 16 14 22 22 C 1.46498 * 120.00223 * 90.00125 * 13 12 11 23 23 C 1.52999 * 117.49889 * 183.23631 * 22 13 12 24 24 C 1.52995 * 117.49922 * 114.57369 * 22 13 12 25 25 C 1.40274 * 121.51476 * 359.48406 * 7 6 5 26 26 C 1.36508 * 119.82067 * 0.25007 * 25 7 6 27 27 C 1.40749 * 118.24425 * 0.02562 * 26 25 7 28 28 C 1.36140 * 119.54410 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47016 * 90.00705 * 1 2 3 30 30 H 1.09002 * 109.46667 * 209.99947 * 1 2 3 31 31 H 1.08995 * 109.46979 * 330.00140 * 1 2 3 32 32 H 1.08004 * 119.45790 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.12723 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99780 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47349 * 60.00357 * 11 10 8 36 36 H 1.08991 * 109.47376 * 299.99940 * 11 10 8 37 37 H 1.09001 * 109.47009 * 300.00439 * 12 11 10 38 38 H 1.09002 * 109.46826 * 59.99495 * 12 11 10 39 39 H 0.96998 * 119.99831 * 175.91162 * 17 16 14 40 40 H 1.09001 * 115.54571 * 328.90605 * 22 13 12 41 41 H 1.08992 * 117.49903 * 0.02562 * 23 22 13 42 42 H 1.09004 * 117.49450 * 145.02081 * 23 22 13 43 43 H 1.09008 * 117.49862 * 214.97838 * 24 22 13 44 44 H 1.09001 * 117.50320 * 359.97438 * 24 22 13 45 45 H 1.08004 * 120.08943 * 180.23458 * 25 7 6 46 46 H 1.07998 * 120.87404 * 179.97438 * 26 25 7 47 47 H 1.07996 * 120.17333 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2851 0.0461 -0.0005 6 7 5.6178 0.0531 0.0041 7 6 6.3088 -1.0702 -0.0008 8 6 7.7903 -1.0092 -0.0009 9 8 8.4405 -2.0355 -0.0005 10 7 8.4156 0.1848 -0.0014 11 6 9.8794 0.2449 -0.0009 12 6 10.3297 1.7073 -0.0022 13 7 11.7934 1.7675 -0.0024 14 6 12.4775 1.7967 1.1835 15 1 13.4318 1.2981 1.2688 16 6 11.9446 2.4670 2.2760 17 7 11.0469 3.4122 2.0942 18 14 12.5016 2.0278 4.0039 19 1 13.5105 0.9402 3.9374 20 1 13.1029 3.2226 4.6490 21 1 11.3337 1.5710 4.7994 22 6 12.5252 1.7965 -1.2711 23 6 14.0537 1.7828 -1.2055 24 6 13.3157 3.0640 -1.6019 25 6 5.6744 -2.3213 -0.0004 26 6 4.3111 -2.3912 0.0001 27 6 3.5824 -1.1870 -0.0004 28 6 2.1783 -1.1844 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6383 2.1389 -0.0004 33 1 4.0707 2.1980 -0.0009 34 1 7.8964 1.0041 -0.0020 35 1 10.2638 -0.2540 -0.8905 36 1 10.2632 -0.2530 0.8894 37 1 9.9458 2.2048 -0.8928 38 1 9.9451 2.2066 0.8871 39 1 10.6309 3.8395 2.8592 40 1 12.0522 1.2680 -2.0988 41 1 14.5148 1.7517 -0.2184 42 1 14.5863 1.2456 -1.9903 43 1 13.3632 3.3692 -2.6473 44 1 13.2910 3.8765 -0.8757 45 1 6.2630 -3.2269 -0.0007 46 1 3.8051 -3.3453 0.0000 47 1 1.6337 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493393536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:28 Heat of formation + Delta-G solvation = 64.168781 kcal Electronic energy + Delta-G solvation = -27946.589713 eV Core-core repulsion = 24095.604509 eV Total energy + Delta-G solvation = -3850.985204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17699 -39.28811 -37.46702 -37.04440 -34.82185 -33.82891 -33.17860 -32.37364 -30.75846 -30.49397 -28.31840 -27.08542 -24.70904 -24.30313 -23.38853 -22.33830 -21.72856 -21.26543 -20.46879 -19.74886 -18.26999 -17.89314 -17.02178 -16.24284 -15.62068 -15.55376 -15.35957 -15.16964 -14.63070 -14.62301 -14.46812 -14.30518 -13.98237 -13.91015 -13.59904 -13.34432 -13.14661 -12.73072 -12.69292 -12.60214 -11.91974 -11.82892 -11.70523 -11.58760 -11.43170 -11.04302 -10.82725 -10.73823 -10.71868 -10.30717 -10.21231 -10.10044 -9.82810 -9.63712 -9.54639 -9.27921 -8.95712 -8.58636 -8.49524 -8.40612 -6.63564 -5.83831 -3.44339 0.00110 0.46680 1.70828 2.31977 3.24644 3.31893 3.37290 3.43452 3.46620 3.96194 3.97324 4.27373 4.41694 4.43243 4.48229 4.70684 4.75165 4.86697 4.93267 5.02451 5.17346 5.19088 5.22474 5.29288 5.33739 5.49880 5.50703 5.70312 5.76934 5.83952 5.91006 6.00971 6.05551 6.11625 6.18478 6.21595 6.24717 6.29716 6.50246 6.52703 6.55276 6.62408 6.83735 6.98975 7.06647 7.22045 7.48822 7.57377 7.77832 7.94817 8.41880 8.49588 9.09407 9.72331 10.27150 11.12435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002380 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.834889 B =11760.964823 C =12105.895116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.078 4.078 5 C 0.120 3.880 6 N -0.440 5.440 7 C 0.122 3.878 8 C 0.559 3.441 9 O -0.538 6.538 10 N -0.694 5.694 11 C 0.097 3.903 12 C 0.136 3.864 13 N -0.547 5.547 14 C -0.258 4.258 15 H 0.069 0.931 16 C 0.011 3.989 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.119 3.881 23 C -0.195 4.195 24 C -0.220 4.220 25 C -0.122 4.122 26 C -0.067 4.067 27 C -0.085 4.085 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.409 0.591 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.107 0.893 39 H 0.255 0.745 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.136 -6.920 -5.832 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.125 4.125 4 C -0.097 4.097 5 C -0.004 4.004 6 N -0.151 5.151 7 C -0.032 4.032 8 C 0.343 3.657 9 O -0.415 6.415 10 N -0.344 5.344 11 C -0.028 4.028 12 C 0.009 3.991 13 N -0.264 5.264 14 C -0.388 4.388 15 H 0.086 0.914 16 C -0.189 4.189 17 N -0.524 5.524 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.010 3.990 23 C -0.233 4.233 24 C -0.261 4.261 25 C -0.143 4.143 26 C -0.093 4.093 27 C -0.087 4.087 28 C -0.125 4.125 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.286 -6.626 -5.681 22.084 hybrid contribution -0.367 -0.539 0.928 1.134 sum -20.652 -7.165 -4.753 22.371 Atomic orbital electron populations 1.20857 0.90737 1.03127 1.02620 1.19760 0.96529 0.93016 0.98395 1.20828 0.93969 0.97858 0.99846 1.20928 0.93557 0.97094 0.98078 1.18866 0.88951 0.92967 0.99586 1.67865 1.07388 1.29926 1.09958 1.21546 0.94798 0.89423 0.97394 1.17912 0.85359 0.84542 0.77936 1.90767 1.65842 1.34045 1.50875 1.45982 1.09103 1.07975 1.71356 1.22427 0.76276 1.02566 1.01571 1.21103 0.84396 0.90704 1.02904 1.43232 1.00434 1.82667 1.00028 1.19134 1.05355 1.26735 0.87537 0.91358 1.25131 0.99825 0.94766 0.99226 1.70040 1.30344 1.22309 1.29738 0.86339 0.78366 0.78029 0.84773 1.19936 1.21607 1.21337 1.21239 0.89769 0.97744 0.90254 1.23042 0.96254 1.01900 1.02141 1.23360 1.09299 0.93812 0.99626 1.21782 0.95056 0.99042 0.98426 1.21428 0.93691 0.97736 0.96481 1.18940 0.94802 0.94023 1.00916 1.20817 0.92106 0.98283 1.01258 0.90827 0.91330 0.91186 0.85092 0.84104 0.75596 0.92812 0.91259 0.94877 0.87567 0.93538 0.89449 0.88405 0.90693 0.91185 0.88968 0.83144 0.83801 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.98 36.01 0.36 -0.21 16 2 C -0.08 -0.60 5.85 -104.93 -0.61 -1.21 16 3 C -0.11 -0.87 9.58 -39.94 -0.38 -1.26 16 4 C -0.08 -0.83 9.99 -39.41 -0.39 -1.22 16 5 C 0.12 1.54 6.61 -84.85 -0.56 0.98 16 6 N -0.44 -6.51 9.47 -7.54 -0.07 -6.58 16 7 C 0.12 1.88 6.75 -82.95 -0.56 1.32 16 8 C 0.56 10.12 7.81 -12.13 -0.09 10.02 16 9 O -0.54 -11.06 16.28 5.37 0.09 -10.97 16 10 N -0.69 -12.62 5.54 -61.11 -0.34 -12.96 16 11 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 12 C 0.14 3.05 5.45 -4.04 -0.02 3.03 16 13 N -0.55 -13.25 2.78 -165.66 -0.46 -13.71 16 14 C -0.26 -6.84 8.63 -15.06 -0.13 -6.97 16 15 H 0.07 1.82 6.55 -52.48 -0.34 1.48 16 16 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 17 N -0.88 -24.48 11.33 55.49 0.63 -23.85 16 18 Si 0.90 21.42 29.61 -169.99 -5.03 16.39 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C 0.12 2.53 6.56 -67.93 -0.45 2.09 16 23 C -0.20 -3.86 9.80 -26.69 -0.26 -4.12 16 24 C -0.22 -4.47 10.36 -26.69 -0.28 -4.74 16 25 C -0.12 -1.55 9.54 -39.44 -0.38 -1.92 16 26 C -0.07 -0.68 9.88 -39.26 -0.39 -1.07 16 27 C -0.08 -0.93 5.75 -106.72 -0.61 -1.55 16 28 C -0.11 -0.89 9.37 -39.52 -0.37 -1.26 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.41 6.90 7.78 -40.82 -0.32 6.58 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.11 2.68 5.36 -51.93 -0.28 2.40 16 39 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 45 H 0.15 1.78 7.60 -52.48 -0.40 1.38 16 46 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -31.01 394.61 -11.19 -42.20 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.71 Total: 9.46 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -5.24 Total: -5.93 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.24 Total: -57.10 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.01 -11.19 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493393536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.372 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds