Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39436 * 119.54273 * 2 1 4 4 C 1.35994 * 121.08435 * 180.02562 * 3 2 1 5 5 C 1.40821 * 119.73512 * 359.97118 * 4 3 2 6 6 N 1.33271 * 120.97794 * 180.25583 * 5 4 3 7 7 C 1.31878 * 121.29909 * 180.25723 * 6 5 4 8 8 C 1.48278 * 119.24075 * 179.75333 * 7 6 5 9 9 O 1.21499 * 119.99944 * 179.72665 * 8 7 6 10 10 N 1.34779 * 120.00033 * 359.73528 * 8 7 6 11 11 C 1.46500 * 119.99636 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.47043 * 179.97438 * 11 10 8 13 13 N 1.46494 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.36937 * 119.99733 * 269.99698 * 13 12 11 15 15 H 1.08006 * 119.99769 * 144.92514 * 14 13 12 16 16 C 1.38812 * 120.00451 * 324.93178 * 14 13 12 17 17 N 1.31617 * 119.99621 * 337.93125 * 16 14 13 18 18 Si 1.86790 * 120.00196 * 157.93616 * 16 14 13 19 19 H 1.48499 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47436 * 119.99959 * 18 16 14 21 21 H 1.48501 * 109.47116 * 239.99678 * 18 16 14 22 22 C 1.46498 * 120.00223 * 90.00125 * 13 12 11 23 23 C 1.52999 * 117.49889 * 183.23631 * 22 13 12 24 24 C 1.52995 * 117.49922 * 114.57369 * 22 13 12 25 25 C 1.40274 * 121.51476 * 359.48406 * 7 6 5 26 26 C 1.36508 * 119.82067 * 0.25007 * 25 7 6 27 27 C 1.40749 * 118.24425 * 0.02562 * 26 25 7 28 28 C 1.36140 * 119.54410 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47016 * 90.00705 * 1 2 3 30 30 H 1.09002 * 109.46667 * 209.99947 * 1 2 3 31 31 H 1.08995 * 109.46979 * 330.00140 * 1 2 3 32 32 H 1.08004 * 119.45790 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.12723 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99780 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47349 * 60.00357 * 11 10 8 36 36 H 1.08991 * 109.47376 * 299.99940 * 11 10 8 37 37 H 1.09001 * 109.47009 * 300.00439 * 12 11 10 38 38 H 1.09002 * 109.46826 * 59.99495 * 12 11 10 39 39 H 0.96998 * 119.99831 * 175.91162 * 17 16 14 40 40 H 1.09001 * 115.54571 * 328.90605 * 22 13 12 41 41 H 1.08992 * 117.49903 * 0.02562 * 23 22 13 42 42 H 1.09004 * 117.49450 * 145.02081 * 23 22 13 43 43 H 1.09008 * 117.49862 * 214.97838 * 24 22 13 44 44 H 1.09001 * 117.50320 * 359.97438 * 24 22 13 45 45 H 1.08004 * 120.08943 * 180.23458 * 25 7 6 46 46 H 1.07998 * 120.87404 * 179.97438 * 26 25 7 47 47 H 1.07996 * 120.17333 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2851 0.0461 -0.0005 6 7 5.6178 0.0531 0.0041 7 6 6.3088 -1.0702 -0.0008 8 6 7.7903 -1.0092 -0.0009 9 8 8.4405 -2.0355 -0.0005 10 7 8.4156 0.1848 -0.0014 11 6 9.8794 0.2449 -0.0009 12 6 10.3297 1.7073 -0.0022 13 7 11.7934 1.7675 -0.0024 14 6 12.4775 1.7967 1.1835 15 1 13.4318 1.2981 1.2688 16 6 11.9446 2.4670 2.2760 17 7 11.0469 3.4122 2.0942 18 14 12.5016 2.0278 4.0039 19 1 13.5105 0.9402 3.9374 20 1 13.1029 3.2226 4.6490 21 1 11.3337 1.5710 4.7994 22 6 12.5252 1.7965 -1.2711 23 6 14.0537 1.7828 -1.2055 24 6 13.3157 3.0640 -1.6019 25 6 5.6744 -2.3213 -0.0004 26 6 4.3111 -2.3912 0.0001 27 6 3.5824 -1.1870 -0.0004 28 6 2.1783 -1.1844 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6383 2.1389 -0.0004 33 1 4.0707 2.1980 -0.0009 34 1 7.8964 1.0041 -0.0020 35 1 10.2638 -0.2540 -0.8905 36 1 10.2632 -0.2530 0.8894 37 1 9.9458 2.2048 -0.8928 38 1 9.9451 2.2066 0.8871 39 1 10.6309 3.8395 2.8592 40 1 12.0522 1.2680 -2.0988 41 1 14.5148 1.7517 -0.2184 42 1 14.5863 1.2456 -1.9903 43 1 13.3632 3.3692 -2.6473 44 1 13.2910 3.8765 -0.8757 45 1 6.2630 -3.2269 -0.0007 46 1 3.8051 -3.3453 0.0000 47 1 1.6337 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493393536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = 46.700446 kcal Electronic energy + Delta-G solvation = -27947.347197 eV Core-core repulsion = 24095.604509 eV Total energy + Delta-G solvation = -3851.742688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09291 -40.60225 -38.88521 -38.26031 -36.41832 -35.09457 -34.57556 -33.23499 -32.56174 -31.29404 -29.74499 -28.18097 -26.36384 -25.33489 -24.42772 -23.39438 -23.04729 -22.85386 -21.81103 -21.55252 -19.31747 -18.99614 -18.10660 -17.83698 -17.32756 -16.95083 -16.61712 -16.50261 -16.23631 -15.79963 -15.42065 -15.36456 -15.22417 -14.99334 -14.53367 -14.49534 -14.20627 -14.06609 -14.03783 -13.78338 -13.30644 -13.16105 -12.96877 -12.64453 -12.51700 -12.46103 -12.39179 -12.22431 -12.13339 -11.94148 -11.70135 -11.66353 -11.48691 -11.40031 -10.94145 -10.64051 -10.52296 -10.16481 -9.74829 -9.20052 -8.60171 -7.85759 -5.50019 -0.87968 -0.37184 0.88568 1.34405 1.40090 1.45094 1.53910 1.98382 2.15891 2.46874 2.91790 3.03943 3.12379 3.38728 3.49636 3.55865 3.67957 3.76257 3.86298 4.00017 4.16374 4.28412 4.31879 4.32719 4.36659 4.41505 4.50432 4.58167 4.66036 4.73959 4.76217 4.90139 4.91431 4.93862 5.00633 5.02536 5.06276 5.16771 5.22482 5.28046 5.31060 5.39912 5.44818 5.53889 5.55707 5.64027 5.72824 5.85074 6.33189 6.41406 6.67318 7.04249 7.10346 7.78106 8.27884 9.06337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002380 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.834889 B =11760.964823 C =12105.895116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.093 4.093 4 C -0.103 4.103 5 C 0.092 3.908 6 N -0.460 5.460 7 C 0.095 3.905 8 C 0.559 3.441 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.119 3.881 12 C 0.144 3.856 13 N -0.564 5.564 14 C -0.261 4.261 15 H 0.062 0.938 16 C -0.034 4.034 17 N -0.908 5.908 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.096 3.904 23 C -0.182 4.182 24 C -0.212 4.212 25 C -0.139 4.139 26 C -0.048 4.048 27 C -0.093 4.093 28 C -0.106 4.106 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.414 0.586 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.152 0.848 46 H 0.187 0.813 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.072 -7.979 -6.787 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.122 4.122 5 C -0.032 4.032 6 N -0.172 5.172 7 C -0.057 4.057 8 C 0.345 3.655 9 O -0.449 6.449 10 N -0.344 5.344 11 C -0.007 4.007 12 C 0.017 3.983 13 N -0.281 5.281 14 C -0.391 4.391 15 H 0.080 0.920 16 C -0.232 4.232 17 N -0.552 5.552 18 Si 0.777 3.223 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.012 4.012 23 C -0.220 4.220 24 C -0.253 4.253 25 C -0.160 4.160 26 C -0.073 4.073 27 C -0.095 4.095 28 C -0.124 4.124 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.156 0.844 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.170 0.830 46 H 0.204 0.796 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.218 -7.681 -6.651 25.344 hybrid contribution 0.341 -0.153 1.160 1.218 sum -22.877 -7.834 -5.492 24.797 Atomic orbital electron populations 1.20937 0.88145 1.04385 1.03717 1.20207 0.98356 0.92431 0.96313 1.21220 0.93092 0.99588 0.97326 1.21062 0.94700 0.96478 0.99959 1.19281 0.88393 0.94817 1.00686 1.67726 1.08858 1.30070 1.10589 1.21153 0.92906 0.90965 1.00690 1.18386 0.86903 0.83666 0.76575 1.90724 1.67050 1.34833 1.52254 1.45868 1.08075 1.08676 1.71781 1.21947 0.77779 1.00879 1.00107 1.20922 0.83922 0.91416 1.01995 1.43410 1.01040 1.83071 1.00614 1.19262 1.05139 1.25869 0.88797 0.92016 1.25719 1.00463 0.95066 1.01927 1.70138 1.31555 1.23320 1.30152 0.85505 0.77757 0.77680 0.81334 1.19427 1.21574 1.21774 1.21554 0.90775 0.99078 0.89780 1.23058 0.95182 1.01583 1.02175 1.23267 1.08843 0.92596 1.00559 1.21824 0.96365 0.97860 0.99932 1.21859 0.92513 0.99259 0.93704 1.19252 0.96240 0.93500 1.00553 1.21191 0.90855 1.00104 1.00292 0.89607 0.89977 0.90165 0.82410 0.84376 0.74962 0.92658 0.94219 0.93824 0.90234 0.93873 0.87126 0.90592 0.87072 0.87847 0.92410 0.82984 0.79590 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.98 71.24 0.71 0.11 16 2 C -0.07 -0.87 5.85 -20.06 -0.12 -0.98 16 3 C -0.09 -1.31 9.58 22.04 0.21 -1.10 16 4 C -0.10 -2.15 9.99 22.38 0.22 -1.92 16 5 C 0.09 2.36 6.61 40.47 0.27 2.63 16 6 N -0.46 -14.23 9.47 -177.77 -1.68 -15.91 16 7 C 0.10 3.05 6.75 42.30 0.29 3.34 16 8 C 0.56 21.38 7.81 86.91 0.68 22.06 16 9 O -0.57 -24.57 16.28 -3.71 -0.06 -24.63 16 10 N -0.69 -26.71 5.54 -465.54 -2.58 -29.29 16 11 C 0.12 5.12 6.00 86.38 0.52 5.64 16 12 C 0.14 6.72 5.45 86.38 0.47 7.19 16 13 N -0.56 -27.94 2.78 -678.04 -1.88 -29.83 16 14 C -0.26 -14.18 8.63 84.03 0.73 -13.45 16 15 H 0.06 3.38 6.55 -2.91 -0.02 3.37 16 16 C -0.03 -1.88 4.96 84.86 0.42 -1.46 16 17 N -0.91 -52.17 11.33 21.65 0.25 -51.92 16 18 Si 0.95 45.30 29.61 68.60 2.03 47.34 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 22 C 0.10 4.04 6.56 44.99 0.30 4.33 16 23 C -0.18 -6.98 9.80 30.62 0.30 -6.68 16 24 C -0.21 -8.42 10.36 30.62 0.32 -8.10 16 25 C -0.14 -3.52 9.54 22.36 0.21 -3.31 16 26 C -0.05 -0.88 9.88 22.48 0.22 -0.65 16 27 C -0.09 -1.88 5.75 -21.22 -0.12 -2.00 16 28 C -0.11 -1.40 9.37 22.31 0.21 -1.19 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.26 8.07 -2.39 -0.02 0.24 16 31 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.41 14.94 7.78 -92.71 -0.72 14.22 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 38 H 0.08 4.21 5.36 -2.39 -0.01 4.20 16 39 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 40 H 0.11 4.11 8.14 -2.39 -0.02 4.10 16 41 H 0.08 3.26 6.37 -2.39 -0.02 3.25 16 42 H 0.11 3.45 8.14 -2.39 -0.02 3.44 16 43 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.15 3.67 7.60 -2.91 -0.02 3.65 16 46 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -70.82 394.61 2.17 -68.65 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.27 Total: 31.15 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.83 Total: 4.45 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.90 Total: -126.95 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.82 2.17 -68.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493393536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.351 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds