Wall clock time and date at job start Tue Mar 31 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38149 * 119.55231 * 2 1 4 4 C 1.39813 * 118.99935 * 180.02562 * 3 2 1 5 5 C 1.48158 * 120.92158 * 179.97438 * 4 3 2 6 6 O 1.21512 * 119.99529 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99917 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99572 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46941 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47242 * 65.00362 * 9 8 7 11 11 N 1.46499 * 109.47037 * 305.00297 * 9 8 7 12 12 C 1.36939 * 119.99913 * 155.00052 * 11 9 8 13 13 H 1.08004 * 119.99572 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99890 * 179.97438 * 12 11 9 15 15 N 1.31618 * 119.99840 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00154 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47253 * 89.99722 * 16 14 12 18 18 H 1.48500 * 109.47251 * 209.99836 * 16 14 12 19 19 H 1.48504 * 109.46963 * 329.99564 * 16 14 12 20 20 C 1.50702 * 109.47066 * 184.99762 * 9 8 7 21 21 C 1.38234 * 120.00271 * 259.99910 * 20 9 8 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 79.98038 * 20 9 8 26 26 C 1.39819 * 118.16111 * 0.24705 * 4 3 2 27 27 C 1.38152 * 118.99576 * 359.52459 * 26 4 3 28 28 C 1.50698 * 119.54993 * 180.23172 * 27 26 4 29 29 N 1.31812 * 119.55214 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47093 * 90.00422 * 1 2 3 31 31 H 1.09000 * 109.47417 * 210.00466 * 1 2 3 32 32 H 1.08999 * 109.47474 * 330.00285 * 1 2 3 33 33 H 1.07995 * 120.49887 * 0.02562 * 3 2 1 34 34 H 0.97001 * 120.00371 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47306 * 60.00605 * 8 7 5 36 36 H 1.08999 * 109.47350 * 300.00158 * 8 7 5 37 37 H 0.96998 * 119.99841 * 335.00018 * 11 9 8 38 38 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99769 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00489 * 0.02562 * 25 20 9 44 44 H 1.07995 * 120.50237 * 179.73500 * 26 4 3 45 45 H 1.09000 * 109.46953 * 270.25849 * 28 27 26 46 46 H 1.08996 * 109.47424 * 30.25872 * 28 27 26 47 47 H 1.09004 * 109.47242 * 150.26000 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1883 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.7796 3.5194 -0.0016 7 7 5.7073 2.4172 -0.0011 8 6 6.4721 3.6667 -0.0023 9 6 7.9687 3.3485 -0.0027 10 1 8.2334 2.8476 -0.9338 11 7 8.2820 2.4727 1.1292 12 6 9.3768 1.6518 1.0771 13 1 10.0090 1.6497 0.2014 14 6 9.6740 0.8224 2.1497 15 7 10.7260 0.0330 2.0995 16 14 8.5802 0.8256 3.6640 17 1 7.5052 -0.1856 3.5002 18 1 9.3926 0.4947 4.8622 19 1 7.9733 2.1703 3.8333 20 6 8.7544 4.6286 0.1199 21 6 9.3130 5.2072 -1.0044 22 6 10.0333 6.3816 -0.8919 23 6 10.1945 6.9779 0.3447 24 6 9.6350 6.3999 1.4689 25 6 8.9161 5.2245 1.3567 26 6 4.2343 -0.0507 -0.0064 27 6 3.4739 -1.2041 -0.0013 28 6 4.1594 -2.5462 -0.0022 29 7 2.1571 -1.1466 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6492 2.1375 0.0004 34 1 6.1705 1.5649 -0.0011 35 1 6.2236 4.2456 0.8872 36 1 6.2235 4.2440 -0.8928 37 1 7.7140 2.4744 1.9154 38 1 10.9335 -0.5468 2.8488 39 1 9.1867 4.7415 -1.9707 40 1 10.4694 6.8339 -1.7704 41 1 10.7609 7.8932 0.4333 42 1 9.7612 6.8655 2.4352 43 1 8.4798 4.7725 2.2351 44 1 5.3129 -0.1052 -0.0113 45 1 4.3243 -2.8692 -1.0301 46 1 5.1174 -2.4653 0.5113 47 1 3.5322 -3.2749 0.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493889282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:02 Heat of formation + Delta-G solvation = 32.521760 kcal Electronic energy + Delta-G solvation = -28589.824547 eV Core-core repulsion = 24737.467025 eV Total energy + Delta-G solvation = -3852.357522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78373 -39.40113 -38.77417 -36.16963 -34.16333 -33.65623 -32.95640 -31.99510 -30.55557 -30.07838 -29.24008 -28.01911 -26.78882 -24.66146 -23.23059 -22.64414 -22.01477 -21.92300 -20.31093 -19.94108 -18.09933 -17.47222 -16.87175 -16.43960 -15.74105 -15.59298 -15.46130 -15.07846 -14.79516 -14.62821 -14.55423 -14.25997 -13.79804 -13.47755 -13.40485 -13.27091 -13.03877 -12.93791 -12.92586 -12.57838 -12.55659 -12.26837 -12.24085 -12.03004 -11.78626 -11.48361 -11.12475 -10.96509 -10.85034 -10.61667 -10.29864 -10.23072 -9.93057 -9.73731 -9.57898 -9.18595 -8.96470 -8.93319 -8.50746 -8.31252 -7.51250 -5.92187 -3.31445 0.63872 0.93064 1.75668 1.82213 2.86151 3.14481 3.24263 3.27528 3.35084 3.69355 3.99741 4.18954 4.43428 4.44210 4.55841 4.87635 4.89585 4.95844 5.17516 5.22424 5.28443 5.30957 5.32753 5.35380 5.36848 5.39742 5.47373 5.49286 5.52504 5.60607 5.62239 5.76624 5.89407 5.90486 5.94769 5.96315 5.96956 6.02876 6.24044 6.35260 6.48640 6.48922 6.54298 6.84094 6.89284 7.12848 7.41225 7.56946 7.80604 7.81614 8.19057 8.25229 9.00782 9.72541 9.89671 11.25331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.003553 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.119844 B = 7878.322123 C = 9768.301539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.124 3.876 3 C -0.125 4.125 4 C -0.077 4.077 5 C 0.555 3.445 6 O -0.539 6.539 7 N -0.707 5.707 8 C 0.117 3.883 9 C 0.204 3.796 10 H 0.076 0.924 11 N -0.739 5.739 12 C -0.250 4.250 13 H 0.093 0.907 14 C 0.015 3.985 15 N -0.926 5.926 16 Si 0.876 3.124 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.278 1.278 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.088 4.088 26 C -0.145 4.145 27 C 0.132 3.868 28 C -0.107 4.107 29 N -0.473 5.473 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 3.655 -5.819 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.145 4.145 4 C -0.088 4.088 5 C 0.341 3.659 6 O -0.417 6.417 7 N -0.360 5.360 8 C -0.007 4.007 9 C 0.094 3.906 10 H 0.094 0.906 11 N -0.382 5.382 12 C -0.379 4.379 13 H 0.111 0.889 14 C -0.182 4.182 15 N -0.573 5.573 16 Si 0.706 3.294 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.085 4.085 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.106 4.106 26 C -0.165 4.165 27 C -0.006 4.006 28 C -0.164 4.164 29 N -0.184 5.184 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.162 0.838 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.007 3.493 -5.871 15.584 hybrid contribution 0.404 0.417 1.327 1.448 sum -13.603 3.910 -4.544 14.865 Atomic orbital electron populations 1.20707 0.88363 1.03616 1.03205 1.21246 0.97152 0.87743 0.95243 1.22045 0.93226 0.99954 0.99317 1.20397 0.94465 0.93525 1.00427 1.18154 0.82404 0.88297 0.77092 1.90752 1.70069 1.30707 1.50137 1.45924 1.05455 1.11243 1.73337 1.21718 0.91000 0.85481 1.02546 1.19448 0.89400 0.88260 0.93538 0.90638 1.42853 1.32220 1.46746 1.16369 1.19014 1.02174 1.13688 1.03026 0.88940 1.24622 0.97338 0.98635 0.97556 1.69681 1.27505 1.28016 1.32049 0.86710 0.80562 0.77666 0.84492 1.20881 1.21572 1.20396 1.20804 0.98306 0.96275 0.93090 1.21005 0.98437 0.95857 0.98155 1.21009 0.99881 0.96382 0.97247 1.21002 1.00809 1.00081 0.93061 1.21090 0.98758 0.96453 0.98157 1.20929 0.97957 0.94198 0.97527 1.22291 1.01902 0.92031 1.00319 1.21253 0.89038 0.95868 0.94420 1.20773 1.00250 0.91912 1.03445 1.67224 1.09708 1.29529 1.11977 0.90283 0.90345 0.90509 0.83641 0.75136 0.91256 0.90689 0.80321 0.92856 0.86516 0.86785 0.86924 0.86800 0.86446 0.83767 0.90073 0.89955 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.00 0.37 -0.48 16 2 C 0.12 1.49 6.78 -82.64 -0.56 0.93 16 3 C -0.12 -1.60 9.31 -39.03 -0.36 -1.97 16 4 C -0.08 -1.09 5.91 -104.64 -0.62 -1.71 16 5 C 0.55 8.71 7.80 -12.19 -0.10 8.61 16 6 O -0.54 -9.75 16.45 5.35 0.09 -9.66 16 7 N -0.71 -10.63 5.35 -61.15 -0.33 -10.95 16 8 C 0.12 1.79 5.21 -4.04 -0.02 1.77 16 9 C 0.20 3.47 2.65 -69.08 -0.18 3.28 16 10 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 11 N -0.74 -15.22 3.61 -54.55 -0.20 -15.41 16 12 C -0.25 -6.31 10.40 -15.06 -0.16 -6.46 16 13 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 14 C 0.02 0.41 5.50 -17.43 -0.10 0.32 16 15 N -0.93 -27.29 13.97 55.49 0.78 -26.52 16 16 Si 0.88 20.64 27.74 -169.99 -4.71 15.92 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 20 C -0.08 -1.38 4.92 -104.62 -0.51 -1.89 16 21 C -0.12 -1.77 9.67 -39.59 -0.38 -2.15 16 22 C -0.13 -1.79 10.05 -39.59 -0.40 -2.18 16 23 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.09 -1.52 9.32 -39.58 -0.37 -1.89 16 26 C -0.14 -1.90 9.24 -39.02 -0.36 -2.26 16 27 C 0.13 1.68 6.78 -82.63 -0.56 1.12 16 28 C -0.11 -1.09 10.16 36.00 0.37 -0.72 16 29 N -0.47 -6.23 10.16 -5.79 -0.06 -6.29 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.52 8.08 -51.93 -0.42 0.11 16 33 H 0.15 1.73 7.74 -52.49 -0.41 1.32 16 34 H 0.41 6.03 6.28 -40.82 -0.26 5.78 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.36 7.56 5.66 -40.82 -0.23 7.33 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 2.11 7.72 -52.49 -0.41 1.70 16 44 H 0.14 1.75 6.54 -52.49 -0.34 1.41 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.81 8.08 -51.93 -0.42 0.40 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -31.57 397.42 -9.90 -41.46 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -6.71 Total: 15.73 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -4.74 Total: -10.27 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.19 Total: -59.17 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.71 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.57 -9.90 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493889282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.986 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds