Wall clock time and date at job start Tue Mar 31 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38149 * 119.55231 * 2 1 4 4 C 1.39813 * 118.99935 * 180.02562 * 3 2 1 5 5 C 1.48158 * 120.92158 * 179.97438 * 4 3 2 6 6 O 1.21512 * 119.99529 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99917 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99572 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46941 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47242 * 65.00362 * 9 8 7 11 11 N 1.46499 * 109.47037 * 305.00297 * 9 8 7 12 12 C 1.36939 * 119.99913 * 155.00052 * 11 9 8 13 13 H 1.08004 * 119.99572 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99890 * 179.97438 * 12 11 9 15 15 N 1.31618 * 119.99840 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00154 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47253 * 89.99722 * 16 14 12 18 18 H 1.48500 * 109.47251 * 209.99836 * 16 14 12 19 19 H 1.48504 * 109.46963 * 329.99564 * 16 14 12 20 20 C 1.50702 * 109.47066 * 184.99762 * 9 8 7 21 21 C 1.38234 * 120.00271 * 259.99910 * 20 9 8 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 79.98038 * 20 9 8 26 26 C 1.39819 * 118.16111 * 0.24705 * 4 3 2 27 27 C 1.38152 * 118.99576 * 359.52459 * 26 4 3 28 28 C 1.50698 * 119.54993 * 180.23172 * 27 26 4 29 29 N 1.31812 * 119.55214 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47093 * 90.00422 * 1 2 3 31 31 H 1.09000 * 109.47417 * 210.00466 * 1 2 3 32 32 H 1.08999 * 109.47474 * 330.00285 * 1 2 3 33 33 H 1.07995 * 120.49887 * 0.02562 * 3 2 1 34 34 H 0.97001 * 120.00371 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47306 * 60.00605 * 8 7 5 36 36 H 1.08999 * 109.47350 * 300.00158 * 8 7 5 37 37 H 0.96998 * 119.99841 * 335.00018 * 11 9 8 38 38 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99769 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00489 * 0.02562 * 25 20 9 44 44 H 1.07995 * 120.50237 * 179.73500 * 26 4 3 45 45 H 1.09000 * 109.46953 * 270.25849 * 28 27 26 46 46 H 1.08996 * 109.47424 * 30.25872 * 28 27 26 47 47 H 1.09004 * 109.47242 * 150.26000 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1883 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.7796 3.5194 -0.0016 7 7 5.7073 2.4172 -0.0011 8 6 6.4721 3.6667 -0.0023 9 6 7.9687 3.3485 -0.0027 10 1 8.2334 2.8476 -0.9338 11 7 8.2820 2.4727 1.1292 12 6 9.3768 1.6518 1.0771 13 1 10.0090 1.6497 0.2014 14 6 9.6740 0.8224 2.1497 15 7 10.7260 0.0330 2.0995 16 14 8.5802 0.8256 3.6640 17 1 7.5052 -0.1856 3.5002 18 1 9.3926 0.4947 4.8622 19 1 7.9733 2.1703 3.8333 20 6 8.7544 4.6286 0.1199 21 6 9.3130 5.2072 -1.0044 22 6 10.0333 6.3816 -0.8919 23 6 10.1945 6.9779 0.3447 24 6 9.6350 6.3999 1.4689 25 6 8.9161 5.2245 1.3567 26 6 4.2343 -0.0507 -0.0064 27 6 3.4739 -1.2041 -0.0013 28 6 4.1594 -2.5462 -0.0022 29 7 2.1571 -1.1466 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6492 2.1375 0.0004 34 1 6.1705 1.5649 -0.0011 35 1 6.2236 4.2456 0.8872 36 1 6.2235 4.2440 -0.8928 37 1 7.7140 2.4744 1.9154 38 1 10.9335 -0.5468 2.8488 39 1 9.1867 4.7415 -1.9707 40 1 10.4694 6.8339 -1.7704 41 1 10.7609 7.8932 0.4333 42 1 9.7612 6.8655 2.4352 43 1 8.4798 4.7725 2.2351 44 1 5.3129 -0.1052 -0.0113 45 1 4.3243 -2.8692 -1.0301 46 1 5.1174 -2.4653 0.5113 47 1 3.5322 -3.2749 0.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493889282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:01 Heat of formation + Delta-G solvation = 14.153700 kcal Electronic energy + Delta-G solvation = -28590.621046 eV Core-core repulsion = 24737.467025 eV Total energy + Delta-G solvation = -3853.154021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83736 -40.61223 -39.98237 -37.59029 -35.49869 -34.72315 -34.20893 -33.51067 -31.88929 -31.54140 -30.03514 -29.31859 -27.70007 -26.02470 -24.83539 -23.87707 -23.20510 -22.88338 -21.61346 -21.19308 -19.88612 -18.68085 -18.01428 -17.62880 -17.05498 -16.77082 -16.63890 -16.36658 -16.01670 -15.95512 -15.65939 -15.60677 -15.04142 -14.84006 -14.61647 -14.36109 -14.15953 -14.14112 -14.09450 -14.08685 -13.54298 -13.28881 -13.11798 -12.97428 -12.93151 -12.81191 -12.73254 -12.48884 -12.25945 -12.02186 -11.82439 -11.72244 -11.49921 -11.05605 -10.98474 -10.59913 -10.23394 -9.86302 -9.70302 -9.62239 -9.32537 -8.01304 -5.36421 -0.42278 -0.02819 0.55487 0.62250 1.35690 1.37395 1.43825 1.70102 1.94923 2.45729 2.67868 2.97660 3.14338 3.29485 3.36297 3.47892 3.61340 3.87370 3.90759 3.96567 4.09534 4.15290 4.28541 4.29858 4.32456 4.37772 4.46262 4.50383 4.62849 4.71212 4.73591 4.74785 4.78477 4.79298 4.93947 4.95993 5.01686 5.12024 5.16034 5.20318 5.27165 5.28188 5.60424 5.67406 5.70346 5.76294 5.87200 6.21500 6.23779 6.33342 6.85686 6.95147 7.05072 7.77243 7.96611 9.19758 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.003553 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.119844 B = 7878.322123 C = 9768.301539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.123 3.877 3 C -0.131 4.131 4 C -0.091 4.091 5 C 0.557 3.443 6 O -0.566 6.566 7 N -0.704 5.704 8 C 0.127 3.873 9 C 0.209 3.791 10 H 0.076 0.924 11 N -0.737 5.737 12 C -0.218 4.218 13 H 0.063 0.937 14 C -0.045 4.045 15 N -0.977 5.977 16 Si 0.935 3.065 17 H -0.273 1.273 18 H -0.303 1.303 19 H -0.262 1.262 20 C -0.102 4.102 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.113 4.113 26 C -0.152 4.152 27 C 0.124 3.876 28 C -0.105 4.105 29 N -0.485 5.485 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.692 4.826 -6.387 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 C -0.151 4.151 4 C -0.102 4.102 5 C 0.344 3.656 6 O -0.446 6.446 7 N -0.356 5.356 8 C 0.003 3.997 9 C 0.100 3.900 10 H 0.094 0.906 11 N -0.380 5.380 12 C -0.349 4.349 13 H 0.081 0.919 14 C -0.238 4.238 15 N -0.627 5.627 16 Si 0.763 3.237 17 H -0.198 1.198 18 H -0.230 1.230 19 H -0.188 1.188 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.132 4.132 26 C -0.173 4.173 27 C -0.013 4.013 28 C -0.162 4.162 29 N -0.197 5.197 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.171 0.829 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.198 0.802 38 H 0.066 0.934 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.166 0.834 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.352 4.701 -6.467 17.309 hybrid contribution 0.822 0.157 1.378 1.613 sum -14.529 4.858 -5.088 16.143 Atomic orbital electron populations 1.20820 0.85733 1.04662 1.04453 1.21812 0.98859 0.87065 0.93765 1.22214 0.92833 1.00736 0.99356 1.20368 0.95025 0.92998 1.01781 1.18379 0.82370 0.88561 0.76289 1.90731 1.70500 1.31780 1.51574 1.45905 1.05449 1.11201 1.73041 1.21592 0.89648 0.85620 1.02811 1.19515 0.90577 0.87951 0.91979 0.90605 1.42742 1.30894 1.46873 1.17498 1.18893 1.01964 1.12733 1.01273 0.91888 1.25216 0.98851 0.99171 1.00531 1.69840 1.30049 1.29911 1.32939 0.85735 0.78912 0.78497 0.80521 1.19843 1.23043 1.18773 1.20736 0.99375 0.96477 0.93893 1.21276 0.98298 0.96541 0.98295 1.21418 0.98843 0.95669 0.98510 1.21410 1.00042 1.00855 0.92519 1.21365 0.98369 0.95909 0.99714 1.20977 0.99483 0.95558 0.97174 1.22362 1.02209 0.91950 1.00767 1.21644 0.89196 0.96678 0.93801 1.20829 1.00129 0.90801 1.04431 1.67335 1.09894 1.30059 1.12439 0.88787 0.89919 0.88843 0.82945 0.74917 0.91958 0.89400 0.80226 0.93433 0.84902 0.83708 0.83857 0.85114 0.87974 0.83350 0.88703 0.89802 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.17 71.23 0.72 -0.72 16 2 C 0.12 2.77 6.78 42.54 0.29 3.06 16 3 C -0.13 -3.23 9.31 22.63 0.21 -3.02 16 4 C -0.09 -2.51 5.91 -19.88 -0.12 -2.63 16 5 C 0.56 17.26 7.80 86.88 0.68 17.94 16 6 O -0.57 -20.27 16.45 -3.75 -0.06 -20.33 16 7 N -0.70 -20.85 5.35 -465.67 -2.49 -23.34 16 8 C 0.13 3.83 5.21 86.38 0.45 4.28 16 9 C 0.21 7.03 2.65 44.25 0.12 7.15 16 10 H 0.08 2.55 7.94 -2.39 -0.02 2.53 16 11 N -0.74 -30.30 3.61 -326.49 -1.18 -31.48 16 12 C -0.22 -11.16 10.40 84.03 0.87 -10.29 16 13 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 14 C -0.05 -2.49 5.50 84.86 0.47 -2.02 16 15 N -0.98 -59.19 13.97 21.65 0.30 -58.89 16 16 Si 0.93 43.06 27.74 68.60 1.90 44.96 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.26 -11.26 6.52 99.48 0.65 -10.61 16 20 C -0.10 -3.39 4.92 -19.87 -0.10 -3.48 16 21 C -0.13 -3.62 9.67 22.27 0.22 -3.41 16 22 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 23 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 24 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 25 C -0.11 -3.88 9.32 22.27 0.21 -3.67 16 26 C -0.15 -3.91 9.24 22.63 0.21 -3.70 16 27 C 0.12 3.05 6.78 42.54 0.29 3.34 16 28 C -0.10 -2.02 10.16 71.24 0.72 -1.29 16 29 N -0.49 -12.17 10.16 -172.23 -1.75 -13.92 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.15 3.47 7.74 -2.91 -0.02 3.45 16 34 H 0.41 11.98 6.28 -92.71 -0.58 11.40 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.36 14.97 5.66 -92.71 -0.52 14.44 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.13 3.29 8.04 -2.91 -0.02 3.27 16 40 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 43 H 0.10 3.70 7.72 -2.91 -0.02 3.68 16 44 H 0.15 3.56 6.54 -2.91 -0.02 3.54 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 47 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -68.59 397.42 2.47 -66.12 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.17 Total: 45.13 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.91 Total: -8.26 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -5.11 Total: -127.63 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.96 kcal Total: -68.59 2.47 -66.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493889282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.276 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds