Wall clock time and date at job start Tue Mar 31 2020 22:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38153 * 119.55306 * 2 1 4 4 C 1.39814 * 119.00535 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.92453 * 179.97438 * 4 3 2 6 6 O 1.21521 * 119.99416 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99951 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99673 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47043 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47767 * 295.00323 * 9 8 7 11 11 N 1.46506 * 109.46808 * 55.00436 * 9 8 7 12 12 C 1.36938 * 119.99589 * 205.00092 * 11 9 8 13 13 H 1.07999 * 120.00325 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99817 * 180.02562 * 12 11 9 15 15 N 1.31621 * 119.99673 * 359.71804 * 14 12 11 16 16 Si 1.86795 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47274 * 89.99913 * 16 14 12 18 18 H 1.48505 * 109.47015 * 209.99478 * 16 14 12 19 19 H 1.48498 * 109.47362 * 329.99904 * 16 14 12 20 20 C 1.50701 * 109.47055 * 175.00016 * 9 8 7 21 21 C 1.38239 * 120.00111 * 279.72946 * 20 9 8 22 22 C 1.38232 * 120.00114 * 179.79245 * 21 20 9 23 23 C 1.38242 * 119.99966 * 0.43498 * 22 21 20 24 24 C 1.38240 * 119.99528 * 359.81911 * 23 22 21 25 25 C 1.38230 * 119.99996 * 100.00415 * 20 9 8 26 26 C 1.39816 * 118.15250 * 0.25367 * 4 3 2 27 27 C 1.38143 * 119.00116 * 359.52389 * 26 4 3 28 28 C 1.50706 * 119.55340 * 180.22964 * 27 26 4 29 29 N 1.31812 * 119.55397 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46637 * 90.00218 * 1 2 3 31 31 H 1.08994 * 109.46678 * 209.99729 * 1 2 3 32 32 H 1.09002 * 109.47094 * 330.00512 * 1 2 3 33 33 H 1.08001 * 120.49774 * 0.02562 * 3 2 1 34 34 H 0.96995 * 120.00100 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47353 * 60.00016 * 8 7 5 36 36 H 1.08999 * 109.47248 * 300.00266 * 8 7 5 37 37 H 0.96999 * 120.00080 * 24.99582 * 11 9 8 38 38 H 0.97000 * 120.00043 * 180.02562 * 15 14 12 39 39 H 1.07998 * 119.99958 * 359.97438 * 21 20 9 40 40 H 1.07999 * 120.00029 * 180.27545 * 22 21 20 41 41 H 1.07992 * 120.00330 * 179.83133 * 23 22 21 42 42 H 1.07997 * 119.99389 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99987 * 359.97438 * 25 20 9 44 44 H 1.07997 * 120.49776 * 179.72314 * 26 4 3 45 45 H 1.08997 * 109.46840 * 270.25853 * 28 27 26 46 46 H 1.09002 * 109.47093 * 30.25200 * 28 27 26 47 47 H 1.08992 * 109.47350 * 150.25480 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3600 2.4520 0.0000 6 8 3.7795 3.5196 -0.0005 7 7 5.7073 2.4174 0.0000 8 6 6.4721 3.6669 0.0000 9 6 7.9686 3.3488 0.0007 10 1 8.2335 2.8486 0.9322 11 7 8.2820 2.4721 -1.1305 12 6 9.3768 1.6513 -1.0778 13 1 10.0094 1.6504 -0.2025 14 6 9.6741 0.8210 -2.1498 15 7 8.9004 0.8188 -3.2147 16 14 11.1678 -0.2982 -2.0782 17 1 10.7786 -1.6066 -1.4934 18 1 11.6962 -0.5070 -3.4503 19 1 12.2163 0.3289 -1.2341 20 6 8.7543 4.6288 -0.1231 21 6 8.9211 5.2205 -1.3613 22 6 9.6381 6.3969 -1.4742 23 6 10.1960 6.9770 -0.3503 24 6 10.0336 6.3825 0.8872 25 6 9.3129 5.2083 1.0007 26 6 4.2344 -0.0506 -0.0044 27 6 3.4741 -1.2039 0.0005 28 6 4.1595 -2.5461 0.0005 29 7 2.1572 -1.1466 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6492 2.1376 0.0004 34 1 6.1705 1.5652 0.0000 35 1 6.2235 4.2450 0.8901 36 1 6.2235 4.2451 -0.8899 37 1 7.7140 2.4732 -1.9168 38 1 9.1079 0.2384 -3.9636 39 1 8.4888 4.7651 -2.2400 40 1 9.7647 6.8614 -2.4410 41 1 10.7585 7.8946 -0.4388 42 1 10.4698 6.8355 1.7652 43 1 9.1860 4.7440 1.9675 44 1 5.3130 -0.1051 -0.0086 45 1 4.3252 -2.8694 -1.0271 46 1 5.1172 -2.4650 0.5147 47 1 3.5321 -3.2745 0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493889283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:04 Heat of formation + Delta-G solvation = 11.462741 kcal Electronic energy + Delta-G solvation = -28478.511105 eV Core-core repulsion = 24625.240395 eV Total energy + Delta-G solvation = -3853.270710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80089 -40.55268 -39.94367 -37.45655 -35.43373 -34.69746 -34.16517 -33.38770 -31.70500 -31.18784 -30.01267 -29.16863 -27.66885 -26.04453 -25.04484 -23.82332 -23.19519 -22.85872 -21.56868 -21.10903 -19.35753 -18.63582 -18.00207 -17.60091 -16.93983 -16.73170 -16.61070 -16.33818 -15.97195 -15.77143 -15.69073 -15.57420 -15.13254 -14.81537 -14.55032 -14.23595 -14.12372 -14.08304 -14.04946 -13.84182 -13.42723 -13.26068 -12.94763 -12.92103 -12.83392 -12.78591 -12.70406 -12.44037 -12.18647 -12.00757 -11.84922 -11.64348 -11.46234 -10.99418 -10.95553 -10.57766 -10.17587 -9.83794 -9.68049 -9.53649 -9.03992 -7.91902 -5.21769 -0.39253 -0.00103 0.57987 0.64664 1.48866 1.51328 1.57742 1.73140 2.00862 2.56534 2.70815 3.01292 3.16744 3.38563 3.45487 3.62613 3.77778 3.91440 3.96937 4.01955 4.15424 4.20419 4.31825 4.34201 4.36041 4.40853 4.48995 4.52607 4.67161 4.73735 4.75076 4.78692 4.80663 4.81859 4.97417 5.00915 5.03435 5.14116 5.19684 5.21755 5.30353 5.32949 5.55823 5.62851 5.69161 5.73242 5.93338 6.24976 6.28252 6.38634 6.87585 6.99736 7.36137 8.02491 8.29586 9.29880 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009233 B = 0.003510 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.998131 B = 7974.499251 C =10387.112533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.122 3.878 3 C -0.132 4.132 4 C -0.090 4.090 5 C 0.555 3.445 6 O -0.571 6.571 7 N -0.698 5.698 8 C 0.130 3.870 9 C 0.204 3.796 10 H 0.074 0.926 11 N -0.719 5.719 12 C -0.231 4.231 13 H 0.075 0.925 14 C -0.059 4.059 15 N -0.962 5.962 16 Si 0.960 3.040 17 H -0.283 1.283 18 H -0.304 1.304 19 H -0.277 1.277 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.148 4.148 27 C 0.124 3.876 28 C -0.103 4.103 29 N -0.485 5.485 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.152 0.848 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.375 0.625 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 2.170 9.761 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.153 4.153 4 C -0.101 4.101 5 C 0.342 3.658 6 O -0.451 6.451 7 N -0.349 5.349 8 C 0.006 3.994 9 C 0.095 3.905 10 H 0.091 0.909 11 N -0.358 5.358 12 C -0.363 4.363 13 H 0.092 0.908 14 C -0.252 4.252 15 N -0.612 5.612 16 Si 0.790 3.210 17 H -0.210 1.210 18 H -0.231 1.231 19 H -0.202 1.202 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.013 4.013 28 C -0.160 4.160 29 N -0.197 5.197 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.169 0.831 34 H 0.251 0.749 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.207 0.793 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.626 2.054 9.827 13.908 hybrid contribution 1.605 -0.141 -1.013 1.903 sum -8.021 1.914 8.814 12.070 Atomic orbital electron populations 1.20816 0.85676 1.04783 1.04320 1.21809 0.98874 0.87034 0.93857 1.22212 0.92826 1.00750 0.99498 1.20367 0.95031 0.93023 1.01695 1.18421 0.82473 0.88596 0.76307 1.90718 1.70570 1.31883 1.51951 1.45850 1.05341 1.11157 1.72588 1.21536 0.90316 0.85548 1.02036 1.19549 0.90241 0.88262 0.92488 0.90860 1.42493 1.30881 1.45355 1.17093 1.19445 1.02792 1.13532 1.00515 0.90751 1.25320 1.01278 1.02179 0.96440 1.69797 1.40860 1.43287 1.07219 0.85348 0.80158 0.79493 0.75957 1.21030 1.23087 1.20189 1.20841 0.99239 0.96650 0.93713 1.20952 0.99227 0.95419 0.97233 1.21343 0.98577 0.95920 0.99686 1.21394 1.00157 1.00817 0.92488 1.21416 0.98940 0.95682 0.98386 1.21284 0.98370 0.96571 0.98208 1.22329 1.02108 0.91942 1.00521 1.21647 0.89185 0.96668 0.93829 1.20814 1.00381 0.90748 1.04044 1.67334 1.09876 1.29984 1.12483 0.89137 0.89680 0.88715 0.83078 0.74942 0.89803 0.92879 0.79265 0.94212 0.88619 0.85493 0.83859 0.83558 0.84710 0.83567 0.89731 0.89190 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.84 16 2 C 0.12 2.96 6.78 42.54 0.29 3.25 16 3 C -0.13 -3.57 9.31 22.63 0.21 -3.36 16 4 C -0.09 -2.74 5.91 -19.88 -0.12 -2.85 16 5 C 0.55 18.97 7.80 86.88 0.68 19.64 16 6 O -0.57 -22.27 16.45 -3.78 -0.06 -22.34 16 7 N -0.70 -22.97 5.35 -465.68 -2.49 -25.46 16 8 C 0.13 4.33 5.21 86.38 0.45 4.78 16 9 C 0.20 7.26 2.65 44.24 0.12 7.38 16 10 H 0.07 2.50 7.94 -2.39 -0.02 2.48 16 11 N -0.72 -31.88 3.79 -326.49 -1.24 -33.12 16 12 C -0.23 -11.52 9.92 84.03 0.83 -10.69 16 13 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 14 C -0.06 -3.12 5.50 84.86 0.47 -2.66 16 15 N -0.96 -54.76 13.06 21.65 0.28 -54.48 16 16 Si 0.96 43.55 29.55 68.60 2.03 45.58 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.10 -3.50 4.92 -19.87 -0.10 -3.60 16 21 C -0.11 -4.02 9.33 22.27 0.21 -3.81 16 22 C -0.14 -4.24 10.05 22.27 0.22 -4.02 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 24 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 25 C -0.13 -3.65 9.67 22.27 0.22 -3.43 16 26 C -0.15 -4.15 9.24 22.63 0.21 -3.94 16 27 C 0.12 3.25 6.78 42.54 0.29 3.53 16 28 C -0.10 -2.08 10.16 71.24 0.72 -1.36 16 29 N -0.48 -12.89 10.16 -172.22 -1.75 -14.64 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 33 H 0.15 3.79 7.74 -2.91 -0.02 3.77 16 34 H 0.41 13.44 6.28 -92.71 -0.58 12.86 16 35 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.37 18.46 7.80 -92.71 -0.72 17.74 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.10 3.94 7.71 -2.91 -0.02 3.92 16 40 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.14 3.28 8.04 -2.91 -0.02 3.26 16 44 H 0.15 3.92 6.54 -2.91 -0.02 3.90 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.13 400.52 2.33 -62.80 By element: Atomic # 1 Polarization: 50.08 SS G_CDS: -0.31 Total: 49.77 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 5.87 Total: -8.12 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -5.19 Total: -127.69 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.13 2.33 -62.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493889283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.263 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds