Wall clock time and date at job start Tue Mar 31 2020 23:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39671 * 126.07028 * 2 1 4 4 C 1.38404 * 105.35963 * 179.84966 * 3 2 1 5 5 C 1.47163 * 126.88578 * 180.10321 * 4 3 2 6 6 O 1.21624 * 119.99883 * 185.70801 * 5 4 3 7 7 N 1.34779 * 119.99932 * 5.70792 * 5 4 3 8 8 C 1.46498 * 120.00099 * 185.14808 * 7 5 4 9 9 C 1.53002 * 109.47108 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.47152 * 305.00049 * 9 8 7 11 11 O 1.42898 * 109.47162 * 65.00008 * 9 8 7 12 12 C 1.52996 * 109.47239 * 185.00103 * 9 8 7 13 13 N 1.46899 * 109.47453 * 179.97438 * 12 9 8 14 14 C 1.46899 * 111.00130 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47079 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00116 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99977 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00018 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99695 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47132 * 60.00071 * 22 20 18 24 24 H 1.48502 * 109.47251 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47163 * 300.00124 * 22 20 18 26 26 N 1.36598 * 106.22969 * 0.39475 * 4 3 2 27 27 C 1.46505 * 125.19054 * 179.73745 * 26 4 3 28 28 N 1.28439 * 109.62118 * 359.74202 * 26 4 3 29 29 H 1.08993 * 109.47812 * 269.72191 * 1 2 3 30 30 H 1.09007 * 109.46978 * 149.71938 * 1 2 3 31 31 H 1.09003 * 109.46738 * 29.72626 * 1 2 3 32 32 H 1.08006 * 127.31898 * 359.95734 * 3 2 1 33 33 H 0.97000 * 119.99686 * 5.15768 * 7 5 4 34 34 H 1.09007 * 109.46959 * 300.00204 * 8 7 5 35 35 H 1.08993 * 109.46784 * 60.00122 * 8 7 5 36 36 H 0.96705 * 114.00029 * 60.00189 * 11 9 8 37 37 H 1.09002 * 109.47004 * 300.00036 * 12 9 8 38 38 H 1.09004 * 109.46976 * 59.99366 * 12 9 8 39 39 H 1.00901 * 110.99739 * 56.04667 * 13 12 9 40 40 H 1.09001 * 109.46882 * 300.00158 * 14 13 12 41 41 H 1.08995 * 109.47345 * 59.99460 * 14 13 12 42 42 H 0.97004 * 119.99857 * 0.02562 * 17 15 14 43 43 H 0.96993 * 120.00250 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47144 * 266.14614 * 27 26 4 45 45 H 1.09000 * 109.46544 * 26.14557 * 27 26 4 46 46 H 1.08998 * 109.46975 * 146.14292 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6395 0.0035 5 6 4.8665 1.4281 0.0070 6 8 5.9418 0.8691 -0.0948 7 7 4.8127 2.7698 0.1232 8 6 6.0387 3.5642 0.0136 9 6 5.7021 5.0473 0.1819 10 1 4.9352 5.3299 -0.5392 11 8 5.2188 5.2787 1.5066 12 6 6.9595 5.8858 -0.0559 13 7 6.6363 7.3097 0.1051 14 6 7.8226 8.1472 -0.1171 15 6 7.4530 9.5978 0.0568 16 8 6.3135 9.9039 0.3377 17 7 8.3888 10.5550 -0.0997 18 6 8.0525 11.8747 0.0580 19 1 7.0378 12.1473 0.3081 20 6 9.0172 12.8616 -0.1040 21 7 10.2517 12.5301 -0.4088 22 14 8.5588 14.6598 0.1101 23 1 8.0481 14.8798 1.4871 24 1 9.7579 15.5065 -0.1148 25 1 7.5059 15.0226 -0.8722 26 7 3.5173 -0.7223 -0.0037 27 6 4.6450 -1.6575 -0.0086 28 7 2.2775 -1.0578 -0.0055 29 1 -0.3634 -0.0050 1.0275 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5096 32 1 2.0206 2.1639 -0.0006 33 1 3.9622 3.2094 0.2794 34 1 6.7392 3.2604 0.7916 35 1 6.4901 3.4025 -0.9651 36 1 5.8507 5.0489 2.2017 37 1 7.7265 5.6031 0.6653 38 1 7.3283 5.7092 -1.0663 39 1 6.2319 7.4884 1.0120 40 1 8.5957 7.8806 0.6036 41 1 8.1971 7.9859 -1.1279 42 1 9.3001 10.3103 -0.3247 43 1 10.9250 13.2190 -0.5222 44 1 4.8805 -1.9372 -1.0354 45 1 5.5135 -1.1817 0.4468 46 1 4.3798 -2.5493 0.5593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496952375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:48 Heat of formation + Delta-G solvation = -77.507974 kcal Electronic energy + Delta-G solvation = -27900.616059 eV Core-core repulsion = 23632.638027 eV Total energy + Delta-G solvation = -4267.978032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.59484 -40.70182 -40.15070 -38.95688 -36.32375 -35.78915 -35.46252 -34.83836 -33.25802 -32.47948 -31.01580 -30.56697 -28.59606 -26.71182 -26.41601 -25.00172 -23.67319 -22.75103 -21.96889 -21.10554 -20.62977 -19.90119 -18.87898 -18.22691 -17.56407 -17.35832 -17.24980 -17.23030 -16.73123 -16.35506 -16.20588 -15.97948 -15.63811 -15.38147 -15.17820 -14.86994 -14.69099 -14.35133 -14.34069 -14.14547 -14.01592 -13.56283 -13.41750 -13.30884 -13.23502 -13.15349 -13.13222 -12.91561 -12.67825 -12.42399 -12.11746 -11.97062 -11.72649 -11.49306 -11.39602 -11.06526 -10.43163 -10.32146 -10.06910 -10.00748 -9.86044 -9.30486 -8.45790 -5.94617 0.14394 1.32379 1.40877 1.42922 1.50083 1.53704 2.05545 2.06620 2.08085 2.30530 2.89994 3.21595 3.40521 3.47477 3.49347 3.53683 3.88010 3.98840 4.04411 4.13977 4.25355 4.30107 4.33105 4.39149 4.45714 4.52118 4.57921 4.58802 4.62711 4.69692 4.77674 4.89237 5.00490 5.09063 5.13136 5.23213 5.41581 5.54188 5.72184 5.88123 6.10174 6.29398 6.42810 6.61182 6.79333 6.93625 7.03681 7.13545 7.57356 8.12931 8.71221 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001486 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.712228 B =18833.377007 C =19576.769335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.012 3.988 3 C -0.180 4.180 4 C -0.056 4.056 5 C 0.592 3.408 6 O -0.571 6.571 7 N -0.694 5.694 8 C 0.098 3.902 9 C 0.112 3.888 10 H 0.110 0.890 11 O -0.566 6.566 12 C 0.031 3.969 13 N -0.680 5.680 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 N -0.268 5.268 27 C 0.082 3.918 28 N -0.302 5.302 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.188 0.812 33 H 0.418 0.582 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.387 0.613 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.349 0.651 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 -27.499 1.024 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 C -0.209 4.209 4 C -0.185 4.185 5 C 0.378 3.622 6 O -0.451 6.451 7 N -0.346 5.346 8 C -0.026 4.026 9 C 0.052 3.948 10 H 0.128 0.872 11 O -0.373 6.373 12 C -0.099 4.099 13 N -0.314 5.314 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.198 1.198 26 N -0.056 5.056 27 C -0.058 4.058 28 N -0.137 5.137 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.205 0.795 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.236 0.764 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.168 0.832 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.003 -28.555 0.120 30.602 hybrid contribution 1.279 1.433 1.003 2.166 sum -9.724 -27.122 1.123 28.835 Atomic orbital electron populations 1.20230 0.84179 1.04264 1.03808 1.22645 0.98657 0.88536 1.04533 1.22539 0.89492 1.01622 1.07213 1.21505 0.96069 0.85679 1.15219 1.16961 0.86280 0.82606 0.76321 1.90773 1.30800 1.71330 1.52186 1.45448 1.12564 1.04769 1.71795 1.22074 0.86496 0.90205 1.03847 1.22025 0.96713 0.90489 0.85535 0.87223 1.86643 1.46303 1.88889 1.15481 1.22632 0.96754 0.87025 1.03462 1.59942 1.27837 1.04367 1.39225 1.21541 0.92784 0.88912 1.03489 1.20941 0.85440 0.88772 0.82534 1.90499 1.21992 1.84037 1.54492 1.41930 1.11394 1.05622 1.62092 1.19646 0.96990 0.82939 1.47036 0.90334 1.26024 0.94658 1.04239 0.96240 1.69658 1.02349 1.36158 1.47882 0.84992 0.77798 0.76690 0.78877 1.19691 1.19498 1.19787 1.45803 1.05428 1.04726 1.49612 1.22482 0.85066 0.92773 1.05448 1.73132 0.89925 1.28980 1.21614 0.89746 0.90944 0.88553 0.79495 0.74493 0.90184 0.89656 0.76389 0.92976 0.88767 0.83192 0.91457 0.87670 0.76947 0.91301 0.88969 0.87723 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 71.24 0.74 0.10 16 2 C 0.01 0.20 7.22 43.05 0.31 0.51 16 3 C -0.18 -2.73 10.43 22.66 0.24 -2.49 16 4 C -0.06 -1.06 6.96 40.79 0.28 -0.77 16 5 C 0.59 11.29 7.78 86.59 0.67 11.96 16 6 O -0.57 -13.71 14.69 -4.11 -0.06 -13.77 16 7 N -0.69 -9.75 5.48 -466.63 -2.56 -12.30 16 8 C 0.10 1.28 5.32 86.38 0.46 1.74 16 9 C 0.11 1.68 3.27 30.59 0.10 1.78 16 10 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 11 O -0.57 -9.35 12.62 -148.98 -1.88 -11.23 16 12 C 0.03 0.55 5.39 86.30 0.47 1.02 16 13 N -0.68 -19.52 6.13 -517.95 -3.17 -22.69 16 14 C 0.07 2.09 6.17 85.56 0.53 2.62 16 15 C 0.44 20.37 7.82 87.66 0.69 21.06 16 16 O -0.62 -34.38 15.78 -3.06 -0.05 -34.43 16 17 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 18 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 22 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 N -0.27 -5.26 3.75 -356.02 -1.33 -6.59 16 27 C 0.08 1.16 10.88 127.77 1.39 2.55 16 28 N -0.30 -6.20 11.90 -47.49 -0.57 -6.77 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.19 1.64 7.63 -2.91 -0.02 1.62 16 33 H 0.42 4.64 7.56 -92.71 -0.70 3.94 16 34 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.39 4.08 9.05 -74.05 -0.67 3.41 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.35 10.96 7.82 -89.69 -0.70 10.25 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 43 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.63 6.22 -2.39 -0.01 1.61 16 46 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.36 395.76 -3.52 -80.88 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -1.74 Total: 40.12 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 7.16 Total: 21.70 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -8.97 Total: -127.93 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -1.99 Total: -59.43 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -77.36 -3.52 -80.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496952375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.376 kcal (2) G-P(sol) polarization free energy of solvation -77.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds