Wall clock time and date at job start Tue Mar 31 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36619 * 120.92043 * 2 1 4 4 C 1.39268 * 119.91008 * 180.02562 * 3 2 1 5 5 N 1.31149 * 121.76470 * 0.02562 * 4 3 2 6 6 C 1.33621 * 121.39859 * 359.96006 * 5 4 3 7 7 C 1.40760 * 120.83725 * 180.02562 * 6 5 4 8 8 C 1.35701 * 120.11052 * 179.79891 * 7 6 5 9 9 C 1.40629 * 120.92445 * 0.48112 * 8 7 6 10 10 C 1.47770 * 119.80340 * 179.77103 * 9 8 7 11 11 O 1.21559 * 120.00430 * 156.00506 * 10 9 8 12 12 N 1.34787 * 119.99569 * 336.00509 * 10 9 8 13 13 C 1.47418 * 125.64637 * 3.48483 * 12 10 9 14 14 C 1.54914 * 104.83063 * 204.17143 * 13 12 10 15 15 C 1.55160 * 101.58156 * 322.99188 * 14 13 12 16 16 C 1.47018 * 125.64458 * 183.53644 * 12 10 9 17 17 H 1.08996 * 110.01326 * 59.40917 * 16 12 10 18 18 C 1.53004 * 109.88344 * 298.31299 * 16 12 10 19 19 N 1.46499 * 109.46959 * 74.49846 * 18 16 12 20 20 C 1.36938 * 119.99584 * 187.46286 * 19 18 16 21 21 H 1.07992 * 120.00322 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00039 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00083 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47128 * 270.00129 * 24 22 20 26 26 H 1.48498 * 109.47206 * 30.00172 * 24 22 20 27 27 H 1.48497 * 109.47452 * 150.00396 * 24 22 20 28 28 C 1.38545 * 120.39893 * 359.49268 * 9 8 7 29 29 C 1.40193 * 119.39864 * 0.25379 * 28 9 8 30 30 H 1.08996 * 109.47403 * 269.97680 * 1 2 3 31 31 H 1.09001 * 109.47540 * 29.97660 * 1 2 3 32 32 H 1.09003 * 109.47242 * 149.97656 * 1 2 3 33 33 H 1.08004 * 120.04669 * 0.04513 * 3 2 1 34 34 H 1.07997 * 119.11763 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.94592 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.53343 * 180.24757 * 8 7 6 37 37 H 1.09005 * 110.36853 * 85.33784 * 13 12 10 38 38 H 1.08989 * 110.46598 * 323.05627 * 13 12 10 39 39 H 1.08996 * 111.00593 * 204.92320 * 14 13 12 40 40 H 1.09000 * 111.03666 * 81.07954 * 14 13 12 41 41 H 1.09001 * 110.72254 * 277.13828 * 15 14 13 42 42 H 1.08998 * 110.72058 * 153.86414 * 15 14 13 43 43 H 1.08999 * 109.47224 * 314.49523 * 18 16 12 44 44 H 1.09000 * 109.47053 * 194.49711 * 18 16 12 45 45 H 0.97000 * 120.00142 * 7.46051 * 19 18 16 46 46 H 0.97003 * 120.00491 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.30359 * 180.27885 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6014 1.1475 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6479 -1.1610 -0.0013 7 6 4.3795 -2.3636 -0.0019 8 6 3.7305 -3.5553 0.0025 9 6 2.3254 -3.6130 -0.0025 10 6 1.6442 -4.9243 -0.0027 11 8 0.5090 -5.0197 0.4214 12 7 2.2816 -6.0148 -0.4732 13 6 3.6769 -6.0565 -0.9472 14 6 3.7311 -7.2656 -1.9142 15 6 2.7856 -8.2725 -1.2073 16 6 1.7002 -7.3591 -0.5996 17 1 0.8307 -7.3293 -1.2562 18 6 1.2928 -7.8817 0.7795 19 7 0.0743 -7.1982 1.2203 20 6 -0.3959 -7.3893 2.4921 21 1 0.1312 -8.0442 3.1700 22 6 -1.5507 -6.7420 2.9097 23 7 -2.0030 -6.9261 4.1319 24 14 -2.4628 -5.6098 1.7369 25 1 -1.9365 -4.2279 1.8732 26 1 -2.2657 -6.0792 0.3419 27 1 -3.9115 -5.6221 2.0632 28 6 1.5758 -2.4478 -0.0015 29 6 2.2308 -1.2083 -0.0008 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6848 2.1164 0.0007 34 1 4.1435 2.0815 -0.0010 35 1 5.4592 -2.3378 -0.0021 36 1 4.3011 -4.4722 0.0061 37 1 4.3576 -6.2098 -0.1098 38 1 3.9276 -5.1368 -1.4755 39 1 4.7432 -7.6639 -1.9853 40 1 3.3493 -6.9964 -2.8990 41 1 3.3157 -8.8150 -0.4245 42 1 2.3490 -8.9631 -1.9287 43 1 2.0950 -7.6901 1.4921 44 1 1.1070 -8.9542 0.7213 45 1 -0.3993 -6.6102 0.6113 46 1 -2.8098 -6.4735 4.4238 47 1 0.4968 -2.4939 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499896379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:33 Heat of formation + Delta-G solvation = 69.185708 kcal Electronic energy + Delta-G solvation = -29803.816136 eV Core-core repulsion = 25953.048482 eV Total energy + Delta-G solvation = -3850.767654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20555 -40.08062 -37.57374 -36.70401 -34.87670 -34.41315 -32.07859 -31.34846 -30.56395 -30.46495 -29.15879 -28.05141 -25.46748 -24.83141 -23.80038 -22.90876 -21.57677 -21.26794 -21.00207 -19.37234 -18.63872 -17.62565 -17.18878 -16.74066 -16.45493 -15.72369 -15.03295 -14.84459 -14.66226 -14.40575 -14.35175 -14.10350 -13.89317 -13.68764 -13.31188 -13.29237 -13.12689 -12.97452 -12.79195 -12.56202 -12.45467 -12.11365 -11.87307 -11.75649 -11.69288 -11.61410 -11.46556 -10.92778 -10.75827 -10.58678 -10.36814 -10.35592 -9.96414 -9.70803 -9.56750 -9.16517 -8.94619 -8.66849 -8.45696 -8.26512 -6.89695 -5.54128 -2.84484 0.10118 0.52656 1.75531 2.41229 3.07872 3.36737 3.62091 3.67399 3.75465 3.94487 4.05778 4.29483 4.38473 4.39720 4.46380 4.58068 4.72143 4.83467 4.88408 4.88813 4.93310 5.05262 5.16409 5.21250 5.26417 5.30157 5.34900 5.41650 5.49295 5.63755 5.67912 5.73125 5.75178 5.76813 5.83610 5.86521 5.88172 5.92354 6.07797 6.09060 6.19594 6.26298 6.31560 6.35617 6.60219 6.72094 6.85705 7.69316 7.72276 8.20697 8.50944 8.67835 9.55107 10.27453 10.49641 11.64716 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.004489 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.082906 B = 6235.980323 C = 8452.318169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 C -0.190 4.190 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.144 3.856 7 C -0.103 4.103 8 C -0.090 4.090 9 C -0.117 4.117 10 C 0.563 3.437 11 O -0.484 6.484 12 N -0.609 5.609 13 C 0.089 3.911 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.127 3.873 17 H 0.074 0.926 18 C 0.150 3.850 19 N -0.745 5.745 20 C -0.232 4.232 21 H 0.081 0.919 22 C 0.002 3.998 23 N -0.944 5.944 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.282 1.282 27 H -0.305 1.305 28 C -0.032 4.032 29 C -0.110 4.110 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.378 0.622 46 H 0.255 0.745 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.373 12.122 -15.865 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 C -0.210 4.210 4 C -0.032 4.032 5 N -0.193 5.193 6 C 0.022 3.978 7 C -0.121 4.121 8 C -0.110 4.110 9 C -0.120 4.120 10 C 0.351 3.649 11 O -0.357 6.357 12 N -0.345 5.345 13 C -0.034 4.034 14 C -0.172 4.172 15 C -0.162 4.162 16 C 0.024 3.976 17 H 0.092 0.908 18 C 0.021 3.979 19 N -0.398 5.398 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.193 4.193 23 N -0.594 5.594 24 Si 0.735 3.265 25 H -0.210 1.210 26 H -0.208 1.208 27 H -0.233 1.233 28 C -0.052 4.052 29 C -0.112 4.112 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.588 11.972 -15.394 24.965 hybrid contribution -1.484 0.899 -0.520 1.812 sum 14.103 12.871 -15.914 24.856 Atomic orbital electron populations 1.20972 0.89713 1.03859 1.03850 1.20276 0.96856 0.92030 0.92531 1.21739 0.95610 0.98729 1.04877 1.22952 0.91501 0.96433 0.92268 1.68052 1.39884 0.97706 1.13617 1.18980 0.89518 0.92576 0.96706 1.20661 1.00360 0.89766 1.01340 1.21676 0.93495 0.99270 0.96570 1.19950 0.93802 0.93645 1.04602 1.17834 0.86160 0.82661 0.78270 1.90738 1.17767 1.83898 1.43294 1.48311 1.12929 1.08831 1.64391 1.22723 0.84075 0.99371 0.97220 1.22808 1.00478 0.95351 0.98550 1.22641 0.96261 0.97216 1.00111 1.21984 0.95974 0.80994 0.98691 0.90780 1.20951 0.90556 0.95088 0.91262 1.43142 1.27207 1.55465 1.13954 1.19021 1.06093 1.22472 0.88623 0.90082 1.24573 0.98365 1.00152 0.96161 1.69740 1.24883 1.47772 1.16961 0.86224 0.77365 0.82138 0.80784 1.20964 1.20823 1.23300 1.21472 1.00761 0.89755 0.93196 1.18663 0.94127 0.93896 1.04562 0.89576 0.90436 0.90364 0.84458 0.82369 0.84292 0.83272 0.90976 0.89938 0.89848 0.90660 0.90046 0.89975 0.95445 0.95611 0.78127 0.93546 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.59 36.00 0.35 -0.89 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.77 9.72 -39.78 -0.39 -2.16 16 4 C 0.14 1.38 11.14 -17.46 -0.19 1.18 16 5 N -0.48 -6.09 10.33 -10.92 -0.11 -6.20 16 6 C 0.14 1.93 6.61 -84.78 -0.56 1.37 16 7 C -0.10 -1.22 9.95 -39.54 -0.39 -1.61 16 8 C -0.09 -1.11 7.86 -39.59 -0.31 -1.42 16 9 C -0.12 -1.79 5.75 -104.99 -0.60 -2.40 16 10 C 0.56 10.29 7.48 -12.36 -0.09 10.20 16 11 O -0.48 -11.25 11.31 5.31 0.06 -11.19 16 12 N -0.61 -9.26 3.06 -164.15 -0.50 -9.76 16 13 C 0.09 0.90 4.99 -2.53 -0.01 0.89 16 14 C -0.13 -1.10 7.09 -24.58 -0.17 -1.28 16 15 C -0.12 -1.31 6.45 -24.89 -0.16 -1.47 16 16 C 0.13 1.99 3.08 -66.95 -0.21 1.79 16 17 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 18 C 0.15 3.10 5.62 -4.04 -0.02 3.07 16 19 N -0.75 -19.70 3.94 -59.91 -0.24 -19.93 16 20 C -0.23 -7.19 10.47 -15.06 -0.16 -7.35 16 21 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -31.89 13.97 55.49 0.78 -31.12 16 24 Si 0.90 25.55 26.47 -169.99 -4.50 21.05 16 25 H -0.28 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.28 -7.75 6.52 56.52 0.37 -7.38 16 27 H -0.31 -8.57 7.11 56.52 0.40 -8.17 16 28 C -0.03 -0.49 8.88 -38.73 -0.34 -0.83 16 29 C -0.11 -1.51 5.74 -106.82 -0.61 -2.12 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.08 0.80 6.51 -51.93 -0.34 0.47 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.48 4.18 -52.49 -0.22 1.26 16 37 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 38 H 0.08 0.72 5.97 -51.94 -0.31 0.41 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.53 8.10 -51.93 -0.42 0.10 16 45 H 0.38 10.15 3.09 -40.82 -0.13 10.02 16 46 H 0.25 8.21 8.31 -40.82 -0.34 7.87 16 47 H 0.14 2.24 6.18 -52.49 -0.32 1.92 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -39.56 368.36 -9.91 -49.47 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.34 Total: 5.90 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -4.60 Total: -3.78 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.08 Total: -67.01 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.06 Total: -11.19 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.50 Total: 21.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.56 -9.91 -49.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499896379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.652 kcal (2) G-P(sol) polarization free energy of solvation -39.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds