Wall clock time and date at job start Tue Mar 31 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36619 * 120.92043 * 2 1 4 4 C 1.39268 * 119.91008 * 180.02562 * 3 2 1 5 5 N 1.31149 * 121.76470 * 0.02562 * 4 3 2 6 6 C 1.33621 * 121.39859 * 359.96006 * 5 4 3 7 7 C 1.40760 * 120.83725 * 180.02562 * 6 5 4 8 8 C 1.35701 * 120.11052 * 179.79891 * 7 6 5 9 9 C 1.40629 * 120.92445 * 0.48112 * 8 7 6 10 10 C 1.47770 * 119.80340 * 179.77103 * 9 8 7 11 11 O 1.21559 * 120.00430 * 156.00506 * 10 9 8 12 12 N 1.34787 * 119.99569 * 336.00509 * 10 9 8 13 13 C 1.47418 * 125.64637 * 3.48483 * 12 10 9 14 14 C 1.54914 * 104.83063 * 204.17143 * 13 12 10 15 15 C 1.55160 * 101.58156 * 322.99188 * 14 13 12 16 16 C 1.47018 * 125.64458 * 183.53644 * 12 10 9 17 17 H 1.08996 * 110.01326 * 59.40917 * 16 12 10 18 18 C 1.53004 * 109.88344 * 298.31299 * 16 12 10 19 19 N 1.46499 * 109.46959 * 74.49846 * 18 16 12 20 20 C 1.36938 * 119.99584 * 187.46286 * 19 18 16 21 21 H 1.07992 * 120.00322 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00039 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00083 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47128 * 270.00129 * 24 22 20 26 26 H 1.48498 * 109.47206 * 30.00172 * 24 22 20 27 27 H 1.48497 * 109.47452 * 150.00396 * 24 22 20 28 28 C 1.38545 * 120.39893 * 359.49268 * 9 8 7 29 29 C 1.40193 * 119.39864 * 0.25379 * 28 9 8 30 30 H 1.08996 * 109.47403 * 269.97680 * 1 2 3 31 31 H 1.09001 * 109.47540 * 29.97660 * 1 2 3 32 32 H 1.09003 * 109.47242 * 149.97656 * 1 2 3 33 33 H 1.08004 * 120.04669 * 0.04513 * 3 2 1 34 34 H 1.07997 * 119.11763 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.94592 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.53343 * 180.24757 * 8 7 6 37 37 H 1.09005 * 110.36853 * 85.33784 * 13 12 10 38 38 H 1.08989 * 110.46598 * 323.05627 * 13 12 10 39 39 H 1.08996 * 111.00593 * 204.92320 * 14 13 12 40 40 H 1.09000 * 111.03666 * 81.07954 * 14 13 12 41 41 H 1.09001 * 110.72254 * 277.13828 * 15 14 13 42 42 H 1.08998 * 110.72058 * 153.86414 * 15 14 13 43 43 H 1.08999 * 109.47224 * 314.49523 * 18 16 12 44 44 H 1.09000 * 109.47053 * 194.49711 * 18 16 12 45 45 H 0.97000 * 120.00142 * 7.46051 * 19 18 16 46 46 H 0.97003 * 120.00491 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.30359 * 180.27885 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6014 1.1475 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6479 -1.1610 -0.0013 7 6 4.3795 -2.3636 -0.0019 8 6 3.7305 -3.5553 0.0025 9 6 2.3254 -3.6130 -0.0025 10 6 1.6442 -4.9243 -0.0027 11 8 0.5090 -5.0197 0.4214 12 7 2.2816 -6.0148 -0.4732 13 6 3.6769 -6.0565 -0.9472 14 6 3.7311 -7.2656 -1.9142 15 6 2.7856 -8.2725 -1.2073 16 6 1.7002 -7.3591 -0.5996 17 1 0.8307 -7.3293 -1.2562 18 6 1.2928 -7.8817 0.7795 19 7 0.0743 -7.1982 1.2203 20 6 -0.3959 -7.3893 2.4921 21 1 0.1312 -8.0442 3.1700 22 6 -1.5507 -6.7420 2.9097 23 7 -2.0030 -6.9261 4.1319 24 14 -2.4628 -5.6098 1.7369 25 1 -1.9365 -4.2279 1.8732 26 1 -2.2657 -6.0792 0.3419 27 1 -3.9115 -5.6221 2.0632 28 6 1.5758 -2.4478 -0.0015 29 6 2.2308 -1.2083 -0.0008 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6848 2.1164 0.0007 34 1 4.1435 2.0815 -0.0010 35 1 5.4592 -2.3378 -0.0021 36 1 4.3011 -4.4722 0.0061 37 1 4.3576 -6.2098 -0.1098 38 1 3.9276 -5.1368 -1.4755 39 1 4.7432 -7.6639 -1.9853 40 1 3.3493 -6.9964 -2.8990 41 1 3.3157 -8.8150 -0.4245 42 1 2.3490 -8.9631 -1.9287 43 1 2.0950 -7.6901 1.4921 44 1 1.1070 -8.9542 0.7213 45 1 -0.3993 -6.6102 0.6113 46 1 -2.8098 -6.4735 4.4238 47 1 0.4968 -2.4939 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499896379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:33 Heat of formation + Delta-G solvation = 42.076825 kcal Electronic energy + Delta-G solvation = -29804.991665 eV Core-core repulsion = 25953.048482 eV Total energy + Delta-G solvation = -3851.943183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16965 -41.21302 -38.69978 -37.83403 -36.38190 -35.72967 -33.71600 -32.92543 -31.57177 -31.46191 -30.61424 -28.88360 -26.92340 -26.01900 -24.80477 -24.24376 -23.24273 -22.21105 -21.95586 -20.61727 -19.99333 -19.31795 -18.27062 -17.85714 -17.47446 -16.83916 -16.63445 -16.28007 -15.77418 -15.63539 -15.44992 -15.34578 -15.10955 -14.90315 -14.67566 -14.37021 -14.17038 -14.09241 -13.89858 -13.82516 -13.59473 -13.56459 -13.34976 -12.98359 -12.82915 -12.78132 -12.71073 -12.47546 -12.13466 -11.96645 -11.77355 -11.72029 -11.54065 -11.23369 -11.00094 -10.81707 -10.56390 -9.88546 -9.71076 -9.28213 -9.12991 -8.03930 -5.28934 -0.85152 -0.38068 0.79570 1.27840 1.38426 1.41769 1.47482 1.92836 2.20800 2.50562 2.99438 3.22559 3.29042 3.38834 3.44252 3.52073 3.63019 3.70009 3.73392 3.90745 3.97402 4.00066 4.15386 4.22859 4.28862 4.36892 4.38401 4.45659 4.56031 4.58552 4.69543 4.73124 4.77987 4.81216 4.85717 4.86361 4.97461 5.01492 5.04438 5.11265 5.15634 5.17723 5.27892 5.39627 5.45206 5.51506 5.72273 5.73794 6.22379 6.50959 6.83782 7.07243 7.25696 8.00081 8.21008 9.18541 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.004489 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.082906 B = 6235.980323 C = 8452.318169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.176 4.176 4 C 0.144 3.856 5 N -0.504 5.504 6 C 0.127 3.873 7 C -0.097 4.097 8 C -0.088 4.088 9 C -0.135 4.135 10 C 0.553 3.447 11 O -0.549 6.549 12 N -0.607 5.607 13 C 0.077 3.923 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.127 3.873 17 H 0.059 0.941 18 C 0.144 3.856 19 N -0.751 5.751 20 C -0.218 4.218 21 H 0.053 0.947 22 C -0.061 4.061 23 N -0.987 5.987 24 Si 0.969 3.031 25 H -0.289 1.289 26 H -0.274 1.274 27 H -0.300 1.300 28 C -0.048 4.048 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.175 0.825 34 H 0.199 0.801 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.017 0.983 44 H 0.035 0.965 45 H 0.377 0.623 46 H 0.254 0.746 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.345 13.873 -18.466 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 C -0.195 4.195 4 C -0.027 4.027 5 N -0.213 5.213 6 C 0.006 3.994 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.138 4.138 10 C 0.342 3.658 11 O -0.428 6.428 12 N -0.341 5.341 13 C -0.044 4.044 14 C -0.156 4.156 15 C -0.153 4.153 16 C 0.023 3.977 17 H 0.077 0.923 18 C 0.017 3.983 19 N -0.403 5.403 20 C -0.350 4.350 21 H 0.071 0.929 22 C -0.252 4.252 23 N -0.640 5.640 24 Si 0.800 3.200 25 H -0.216 1.216 26 H -0.200 1.200 27 H -0.228 1.228 28 C -0.067 4.067 29 C -0.131 4.131 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.193 0.807 34 H 0.216 0.784 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.218 0.782 46 H 0.063 0.937 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.644 13.691 -18.061 29.347 hybrid contribution -2.274 0.435 0.295 2.334 sum 16.370 14.125 -17.765 27.984 Atomic orbital electron populations 1.20990 0.89065 1.04535 1.03669 1.20557 0.97634 0.92173 0.93255 1.22167 0.95650 0.99362 1.02358 1.23710 0.92105 0.97073 0.89837 1.68133 1.40290 0.98046 1.14812 1.19286 0.89481 0.93705 0.96939 1.20968 1.01522 0.89080 0.99945 1.21808 0.91933 1.00576 0.96443 1.19891 0.95259 0.92112 1.06530 1.18409 0.85653 0.84224 0.77483 1.90653 1.20509 1.85023 1.46568 1.48450 1.14915 1.07750 1.62962 1.23128 0.81183 1.01517 0.98539 1.22832 1.01759 0.93190 0.97806 1.22653 0.95006 0.96965 1.00659 1.21980 0.97799 0.82500 0.95382 0.92311 1.21210 0.87976 0.95162 0.93992 1.43281 1.29034 1.55828 1.12180 1.19095 1.05305 1.20566 0.90029 0.92944 1.25260 0.99807 1.02375 0.97765 1.69878 1.25731 1.49570 1.18817 0.85171 0.75979 0.79730 0.79116 1.21613 1.20007 1.22773 1.21440 1.00054 0.90914 0.94340 1.18835 0.94813 0.94023 1.05381 0.90153 0.87523 0.91934 0.80744 0.78427 0.81711 0.80883 0.89355 0.88131 0.86245 0.89893 0.89308 0.88117 0.96450 0.94752 0.78193 0.93681 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.59 71.23 0.68 -1.74 16 2 C -0.03 -0.62 5.92 -19.61 -0.12 -0.74 16 3 C -0.18 -2.76 9.72 22.14 0.22 -2.54 16 4 C 0.14 2.34 11.14 85.04 0.95 3.29 16 5 N -0.50 -11.47 10.33 -188.47 -1.95 -13.42 16 6 C 0.13 3.25 6.61 40.37 0.27 3.52 16 7 C -0.10 -2.13 9.95 22.30 0.22 -1.91 16 8 C -0.09 -2.05 7.86 22.27 0.18 -1.88 16 9 C -0.13 -4.25 5.75 -20.10 -0.12 -4.36 16 10 C 0.55 20.88 7.48 86.76 0.65 21.53 16 11 O -0.55 -26.87 11.31 -3.90 -0.04 -26.91 16 12 N -0.61 -18.13 3.06 -791.51 -2.43 -20.55 16 13 C 0.08 1.33 4.99 86.86 0.43 1.76 16 14 C -0.12 -1.44 7.09 31.99 0.23 -1.21 16 15 C -0.11 -2.07 6.45 31.79 0.21 -1.87 16 16 C 0.13 3.92 3.08 45.35 0.14 4.06 16 17 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 18 C 0.14 6.03 5.62 86.38 0.49 6.51 16 19 N -0.75 -41.02 3.94 -343.45 -1.35 -42.37 16 20 C -0.22 -14.12 10.47 84.03 0.88 -13.24 16 21 H 0.05 3.61 8.06 -2.91 -0.02 3.59 16 22 C -0.06 -4.08 5.50 84.86 0.47 -3.62 16 23 N -0.99 -69.28 13.97 21.65 0.30 -68.98 16 24 Si 0.97 55.60 26.47 68.60 1.82 57.42 16 25 H -0.29 -16.71 7.11 99.48 0.71 -16.00 16 26 H -0.27 -15.14 6.52 99.48 0.65 -14.49 16 27 H -0.30 -16.72 7.11 99.48 0.71 -16.01 16 28 C -0.05 -1.52 8.88 22.82 0.20 -1.32 16 29 C -0.13 -3.52 5.74 -21.29 -0.12 -3.65 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.11 1.34 8.10 -2.39 -0.02 1.32 16 32 H 0.06 1.38 6.51 -2.39 -0.02 1.37 16 33 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.17 3.00 4.18 -2.91 -0.01 2.98 16 37 H 0.09 1.29 7.33 -2.38 -0.02 1.28 16 38 H 0.10 1.43 5.97 -2.39 -0.01 1.42 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.52 7.85 -2.39 -0.02 1.50 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 45 H 0.38 20.92 3.09 -92.71 -0.29 20.63 16 46 H 0.25 17.01 8.31 -92.71 -0.77 16.24 16 47 H 0.12 4.31 6.18 -2.91 -0.02 4.29 16 Total: -1.00 -92.62 368.36 2.85 -89.77 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.66 Total: 22.43 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.85 Total: 2.61 kcal Atomic # 7 Polarization: -139.90 SS G_CDS: -5.42 Total: -145.32 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 14 Polarization: 55.60 SS G_CDS: 1.82 Total: 57.42 kcal Total: -92.62 2.85 -89.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499896379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.846 kcal (2) G-P(sol) polarization free energy of solvation -92.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds