Wall clock time and date at job start Tue Mar 31 2020 22:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38399 * 120.85271 * 2 1 4 4 C 1.38309 * 119.30313 * 179.97438 * 3 2 1 5 5 N 1.31953 * 121.08452 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87890 * 359.68589 * 5 4 3 7 7 C 1.39564 * 120.56293 * 0.57653 * 6 5 4 8 8 C 1.47839 * 120.56025 * 179.72908 * 7 6 5 9 9 O 1.21555 * 119.99989 * 173.93050 * 8 7 6 10 10 N 1.34781 * 119.99966 * 353.93468 * 8 7 6 11 11 C 1.46495 * 119.99682 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46913 * 179.97438 * 11 10 8 13 13 C 1.38262 * 119.99879 * 256.55628 * 12 11 10 14 14 C 1.38208 * 119.99944 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.00020 * 359.79020 * 14 13 12 16 16 C 1.38220 * 120.00018 * 0.48676 * 15 14 13 17 17 C 1.38210 * 119.99977 * 76.57708 * 12 11 10 18 18 C 1.50694 * 120.00049 * 359.97438 * 17 12 11 19 19 N 1.46505 * 109.47433 * 173.11990 * 18 17 12 20 20 C 1.46490 * 119.99968 * 273.90741 * 19 18 17 21 21 C 1.36939 * 119.99574 * 93.90444 * 19 18 17 22 22 H 1.07995 * 120.00376 * 16.30642 * 21 19 18 23 23 C 1.38816 * 119.99424 * 196.30619 * 21 19 18 24 24 N 1.31615 * 120.00164 * 16.25897 * 23 21 19 25 25 Si 1.86804 * 119.99679 * 196.26640 * 23 21 19 26 26 H 1.48500 * 109.47251 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47367 * 119.99667 * 25 23 21 28 28 H 1.48503 * 109.46882 * 239.99963 * 25 23 21 29 29 H 1.09002 * 109.46645 * 263.47571 * 1 2 3 30 30 H 1.08990 * 109.47612 * 23.47647 * 1 2 3 31 31 H 1.09000 * 109.46938 * 143.48097 * 1 2 3 32 32 H 1.07994 * 120.35048 * 359.96128 * 3 2 1 33 33 H 1.08002 * 119.46195 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.72135 * 180.31582 * 6 5 4 35 35 H 0.96996 * 119.99650 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47459 * 60.00260 * 11 10 8 37 37 H 1.08997 * 109.47800 * 299.99787 * 11 10 8 38 38 H 1.07997 * 120.00056 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00244 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.00254 * 180.25539 * 15 14 13 41 41 H 1.07994 * 120.00083 * 179.76572 * 16 15 14 42 42 H 1.09007 * 109.47027 * 293.11911 * 18 17 12 43 43 H 1.09000 * 109.47662 * 53.12100 * 18 17 12 44 44 H 1.09000 * 109.47553 * 88.44465 * 20 19 18 45 45 H 1.09003 * 109.47240 * 208.43795 * 20 19 18 46 46 H 1.09002 * 109.47054 * 328.43940 * 20 19 18 47 47 H 0.97001 * 120.00075 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2498 0.0027 0.0005 6 6 3.6198 -1.1535 0.0062 7 6 2.2250 -1.2017 0.0003 8 6 1.5177 -2.4999 0.0006 9 8 0.3072 -2.5325 0.1068 10 7 2.2151 -3.6473 -0.1168 11 6 1.5142 -4.9337 -0.1159 12 6 2.5152 -6.0511 -0.2596 13 6 2.6637 -6.6942 -1.4746 14 6 3.5820 -7.7186 -1.6065 15 6 4.3552 -8.0975 -0.5248 16 6 4.2027 -7.4585 0.6914 17 6 3.2843 -6.4334 0.8232 18 6 3.1225 -5.7325 2.1473 19 7 3.9202 -6.4211 3.1652 20 6 3.3573 -7.5648 3.8869 21 6 5.1920 -5.9954 3.4417 22 1 5.5163 -5.0172 3.1190 23 6 6.0645 -6.8216 4.1368 24 7 5.8033 -8.1064 4.2519 25 14 7.6093 -6.1096 4.9092 26 1 7.6712 -4.6509 4.6379 27 1 7.5808 -6.3400 6.3758 28 1 8.8041 -6.7720 4.3271 29 1 -0.3633 -0.1168 1.0211 30 1 -0.3634 0.9425 -0.4093 31 1 -0.3633 -0.8259 -0.6116 32 1 1.6965 2.1345 -0.0006 33 1 4.1558 2.0764 0.0010 34 1 4.1872 -2.0724 0.0111 35 1 3.1810 -3.6212 -0.2018 36 1 0.8124 -4.9657 -0.9493 37 1 0.9706 -5.0508 0.8215 38 1 2.0621 -6.3959 -2.3205 39 1 3.6984 -8.2206 -2.5556 40 1 5.0757 -8.8952 -0.6289 41 1 4.8039 -7.7570 1.5373 42 1 3.4621 -4.7007 2.0562 43 1 2.0723 -5.7449 2.4392 44 1 3.5626 -8.4808 3.3330 45 1 3.8106 -7.6291 4.8761 46 1 2.2797 -7.4355 3.9888 47 1 6.4132 -8.6838 4.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501661120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:22 Heat of formation + Delta-G solvation = 54.558535 kcal Electronic energy + Delta-G solvation = -29074.775694 eV Core-core repulsion = 25223.373759 eV Total energy + Delta-G solvation = -3851.401936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.89413 -39.48623 -38.63506 -35.61219 -35.15602 -33.83880 -32.31229 -31.82181 -30.67934 -29.88262 -28.16494 -26.48672 -25.92783 -25.46937 -24.28017 -22.39052 -22.17073 -20.86280 -20.82450 -19.98062 -18.00812 -16.93118 -16.77719 -16.49643 -15.95952 -15.67368 -15.50114 -15.06592 -14.91719 -14.56968 -14.18599 -13.95073 -13.70511 -13.61035 -13.20418 -13.00412 -12.93522 -12.88898 -12.79146 -12.48521 -12.41001 -12.19015 -12.12445 -11.56945 -11.35452 -10.93717 -10.81997 -10.51439 -10.47042 -10.30763 -10.17917 -10.02702 -9.87517 -9.76509 -9.51229 -9.45621 -9.01580 -8.56199 -8.34746 -8.06596 -6.93743 -5.80944 -3.20264 0.46315 0.97566 1.67209 1.96008 2.77324 3.19872 3.35255 3.43976 3.45244 3.64735 4.10247 4.31837 4.45187 4.46129 4.46867 4.64086 4.79336 4.94491 5.15899 5.21877 5.29410 5.30932 5.39438 5.41713 5.52369 5.55979 5.57266 5.61824 5.74988 5.78973 5.90613 5.98492 6.14008 6.23413 6.30158 6.36686 6.40167 6.43046 6.52972 6.70184 6.75457 6.88435 7.16240 7.32893 7.38812 7.46594 7.64510 7.66042 7.66458 7.78109 8.11855 8.30955 9.16784 9.79744 10.26457 11.25055 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.003628 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.710063 B = 7715.502860 C = 9384.377382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.018 3.982 3 C -0.188 4.188 4 C 0.122 3.878 5 N -0.491 5.491 6 C 0.143 3.857 7 C -0.192 4.192 8 C 0.563 3.437 9 O -0.534 6.534 10 N -0.713 5.713 11 C 0.169 3.831 12 C -0.130 4.130 13 C -0.113 4.113 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.085 4.085 17 C -0.076 4.076 18 C 0.182 3.818 19 N -0.599 5.599 20 C 0.159 3.841 21 C -0.252 4.252 22 H 0.071 0.929 23 C 0.001 3.999 24 N -0.907 5.907 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.158 0.842 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.064 0.936 46 H -0.006 1.006 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 12.198 -11.711 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.033 4.033 5 N -0.200 5.200 6 C -0.016 4.016 7 C -0.197 4.197 8 C 0.350 3.650 9 O -0.413 6.413 10 N -0.365 5.365 11 C 0.047 3.953 12 C -0.131 4.131 13 C -0.132 4.132 14 C -0.158 4.158 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.080 4.080 18 C 0.054 3.946 19 N -0.321 5.321 20 C 0.015 3.985 21 C -0.381 4.381 22 H 0.089 0.911 23 C -0.197 4.197 24 N -0.553 5.553 25 Si 0.731 3.269 26 H -0.204 1.204 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.176 0.824 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.012 0.988 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.055 12.040 -11.506 18.500 hybrid contribution 0.665 0.114 0.285 0.732 sum -7.391 12.154 -11.220 18.117 Atomic orbital electron populations 1.21089 0.89105 1.03405 1.04242 1.20496 0.97542 0.91325 0.89666 1.22070 0.95582 0.98645 1.04446 1.22991 0.91766 0.96492 0.92085 1.67728 1.40825 0.98280 1.13159 1.23066 0.90463 0.96745 0.91276 1.20889 0.95211 0.94379 1.09230 1.17987 0.86909 0.83399 0.76698 1.90722 1.13463 1.87142 1.49984 1.46044 1.11159 1.05498 1.73758 1.20136 0.92969 0.79526 1.02693 1.19627 0.99982 0.99109 0.94339 1.20830 0.99022 0.97092 0.96236 1.20978 0.97794 0.98490 0.98532 1.21298 0.99112 0.99865 0.93520 1.21713 0.96794 0.93726 0.98014 1.21318 0.93936 0.96132 0.96575 1.19892 0.94859 0.94873 0.84971 1.44011 1.13255 1.35264 1.39573 1.20900 0.91198 0.88722 0.97725 1.19271 0.88330 0.98353 1.32132 0.91134 1.24839 0.97944 0.95013 1.01855 1.70100 1.37693 1.02478 1.45014 0.86239 0.82984 0.78517 0.79167 1.20356 1.21637 1.21809 0.89911 0.91950 0.88268 0.84187 0.82299 0.82268 0.76189 0.91021 0.90311 0.87003 0.87053 0.86822 0.82428 0.92192 0.93107 0.96345 0.91717 0.98794 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.84 36.00 0.32 -0.89 16 2 C 0.02 0.20 5.95 -103.91 -0.62 -0.42 16 3 C -0.19 -1.67 9.78 -39.50 -0.39 -2.05 16 4 C 0.12 1.17 11.17 -17.47 -0.20 0.98 16 5 N -0.49 -6.01 10.35 -12.91 -0.13 -6.15 16 6 C 0.14 1.71 10.70 -17.13 -0.18 1.53 16 7 C -0.19 -2.34 5.89 -104.82 -0.62 -2.96 16 8 C 0.56 7.59 7.73 -12.33 -0.10 7.49 16 9 O -0.53 -8.27 13.51 5.32 0.07 -8.20 16 10 N -0.71 -9.05 5.32 -62.43 -0.33 -9.38 16 11 C 0.17 2.27 5.16 -5.19 -0.03 2.25 16 12 C -0.13 -1.95 5.25 -104.62 -0.55 -2.49 16 13 C -0.11 -1.58 9.67 -39.58 -0.38 -1.96 16 14 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.12 -2.02 10.05 -39.58 -0.40 -2.41 16 16 C -0.08 -1.67 9.17 -39.58 -0.36 -2.04 16 17 C -0.08 -1.38 5.87 -104.63 -0.61 -1.99 16 18 C 0.18 3.55 5.10 -5.19 -0.03 3.52 16 19 N -0.60 -14.15 1.75 -182.50 -0.32 -14.47 16 20 C 0.16 3.79 8.78 59.84 0.53 4.32 16 21 C -0.25 -6.50 8.97 -15.06 -0.14 -6.63 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C 0.00 0.03 5.03 -17.43 -0.09 -0.05 16 24 N -0.91 -24.92 10.55 55.49 0.59 -24.34 16 25 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.10 1.15 5.96 -51.93 -0.31 0.84 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.16 1.70 6.47 -52.49 -0.34 1.36 16 35 H 0.40 4.75 6.57 -40.82 -0.27 4.48 16 36 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 37 H 0.08 1.14 7.02 -51.93 -0.36 0.77 16 38 H 0.11 1.30 8.01 -52.49 -0.42 0.88 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.16 3.78 6.00 -52.49 -0.31 3.47 16 42 H 0.06 1.14 7.84 -51.92 -0.41 0.73 16 43 H 0.05 0.95 7.07 -51.93 -0.37 0.59 16 44 H 0.02 0.46 7.56 -51.93 -0.39 0.07 16 45 H 0.06 1.69 6.48 -51.93 -0.34 1.35 16 46 H -0.01 -0.14 7.95 -51.93 -0.41 -0.55 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -29.84 385.01 -10.01 -39.85 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.43 Total: 6.92 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -4.23 Total: -6.24 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.20 Total: -54.34 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.07 Total: -8.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.84 -10.01 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501661120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.411 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds