Wall clock time and date at job start Tue Mar 31 2020 22:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38399 * 120.85271 * 2 1 4 4 C 1.38309 * 119.30313 * 179.97438 * 3 2 1 5 5 N 1.31953 * 121.08452 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87890 * 359.68589 * 5 4 3 7 7 C 1.39564 * 120.56293 * 0.57653 * 6 5 4 8 8 C 1.47839 * 120.56025 * 179.72908 * 7 6 5 9 9 O 1.21555 * 119.99989 * 173.93050 * 8 7 6 10 10 N 1.34781 * 119.99966 * 353.93468 * 8 7 6 11 11 C 1.46495 * 119.99682 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46913 * 179.97438 * 11 10 8 13 13 C 1.38262 * 119.99879 * 256.55628 * 12 11 10 14 14 C 1.38208 * 119.99944 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.00020 * 359.79020 * 14 13 12 16 16 C 1.38220 * 120.00018 * 0.48676 * 15 14 13 17 17 C 1.38210 * 119.99977 * 76.57708 * 12 11 10 18 18 C 1.50694 * 120.00049 * 359.97438 * 17 12 11 19 19 N 1.46505 * 109.47433 * 173.11990 * 18 17 12 20 20 C 1.46490 * 119.99968 * 273.90741 * 19 18 17 21 21 C 1.36939 * 119.99574 * 93.90444 * 19 18 17 22 22 H 1.07995 * 120.00376 * 16.30642 * 21 19 18 23 23 C 1.38816 * 119.99424 * 196.30619 * 21 19 18 24 24 N 1.31615 * 120.00164 * 16.25897 * 23 21 19 25 25 Si 1.86804 * 119.99679 * 196.26640 * 23 21 19 26 26 H 1.48500 * 109.47251 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47367 * 119.99667 * 25 23 21 28 28 H 1.48503 * 109.46882 * 239.99963 * 25 23 21 29 29 H 1.09002 * 109.46645 * 263.47571 * 1 2 3 30 30 H 1.08990 * 109.47612 * 23.47647 * 1 2 3 31 31 H 1.09000 * 109.46938 * 143.48097 * 1 2 3 32 32 H 1.07994 * 120.35048 * 359.96128 * 3 2 1 33 33 H 1.08002 * 119.46195 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.72135 * 180.31582 * 6 5 4 35 35 H 0.96996 * 119.99650 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47459 * 60.00260 * 11 10 8 37 37 H 1.08997 * 109.47800 * 299.99787 * 11 10 8 38 38 H 1.07997 * 120.00056 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00244 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.00254 * 180.25539 * 15 14 13 41 41 H 1.07994 * 120.00083 * 179.76572 * 16 15 14 42 42 H 1.09007 * 109.47027 * 293.11911 * 18 17 12 43 43 H 1.09000 * 109.47662 * 53.12100 * 18 17 12 44 44 H 1.09000 * 109.47553 * 88.44465 * 20 19 18 45 45 H 1.09003 * 109.47240 * 208.43795 * 20 19 18 46 46 H 1.09002 * 109.47054 * 328.43940 * 20 19 18 47 47 H 0.97001 * 120.00075 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2498 0.0027 0.0005 6 6 3.6198 -1.1535 0.0062 7 6 2.2250 -1.2017 0.0003 8 6 1.5177 -2.4999 0.0006 9 8 0.3072 -2.5325 0.1068 10 7 2.2151 -3.6473 -0.1168 11 6 1.5142 -4.9337 -0.1159 12 6 2.5152 -6.0511 -0.2596 13 6 2.6637 -6.6942 -1.4746 14 6 3.5820 -7.7186 -1.6065 15 6 4.3552 -8.0975 -0.5248 16 6 4.2027 -7.4585 0.6914 17 6 3.2843 -6.4334 0.8232 18 6 3.1225 -5.7325 2.1473 19 7 3.9202 -6.4211 3.1652 20 6 3.3573 -7.5648 3.8869 21 6 5.1920 -5.9954 3.4417 22 1 5.5163 -5.0172 3.1190 23 6 6.0645 -6.8216 4.1368 24 7 5.8033 -8.1064 4.2519 25 14 7.6093 -6.1096 4.9092 26 1 7.6712 -4.6509 4.6379 27 1 7.5808 -6.3400 6.3758 28 1 8.8041 -6.7720 4.3271 29 1 -0.3633 -0.1168 1.0211 30 1 -0.3634 0.9425 -0.4093 31 1 -0.3633 -0.8259 -0.6116 32 1 1.6965 2.1345 -0.0006 33 1 4.1558 2.0764 0.0010 34 1 4.1872 -2.0724 0.0111 35 1 3.1810 -3.6212 -0.2018 36 1 0.8124 -4.9657 -0.9493 37 1 0.9706 -5.0508 0.8215 38 1 2.0621 -6.3959 -2.3205 39 1 3.6984 -8.2206 -2.5556 40 1 5.0757 -8.8952 -0.6289 41 1 4.8039 -7.7570 1.5373 42 1 3.4621 -4.7007 2.0562 43 1 2.0723 -5.7449 2.4392 44 1 3.5626 -8.4808 3.3330 45 1 3.8106 -7.6291 4.8761 46 1 2.2797 -7.4355 3.9888 47 1 6.4132 -8.6838 4.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501661120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:21 Heat of formation + Delta-G solvation = 38.817207 kcal Electronic energy + Delta-G solvation = -29075.458290 eV Core-core repulsion = 25223.373759 eV Total energy + Delta-G solvation = -3852.084531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79482 -40.65973 -39.74037 -37.40047 -36.22632 -34.69253 -33.79327 -33.09882 -31.77464 -31.45927 -28.99650 -28.09956 -27.62752 -26.83186 -25.17634 -23.85329 -23.21410 -22.23452 -21.81435 -21.40340 -18.99677 -18.73079 -17.86047 -17.37482 -17.15429 -16.97026 -16.55748 -16.47542 -15.97395 -15.87221 -15.50055 -15.40303 -14.94053 -14.76235 -14.69697 -14.48450 -14.03146 -13.80382 -13.67922 -13.61711 -13.51474 -13.36572 -13.27391 -13.04767 -12.93970 -12.82703 -12.58692 -12.29276 -12.00860 -11.95400 -11.80463 -11.63075 -11.12537 -10.62327 -10.58331 -10.41969 -10.26275 -10.03283 -9.62591 -9.39990 -8.89099 -7.83507 -5.23589 -0.37027 0.18194 0.40450 0.66287 1.45012 1.48439 1.56731 1.81120 2.16522 2.51237 2.80800 3.02596 3.31698 3.32447 3.65186 3.65480 3.71734 3.75845 3.84906 4.03358 4.08142 4.19889 4.37778 4.40841 4.43496 4.57221 4.60309 4.69573 4.73326 4.76556 4.79804 4.82265 4.83671 4.84896 5.02999 5.15042 5.22013 5.30093 5.34414 5.37721 5.43388 5.58545 5.62950 5.64903 5.71962 5.83805 5.97675 6.25652 6.33489 6.43001 6.86234 7.09776 7.15201 7.86243 8.29037 9.21474 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.003628 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.710063 B = 7715.502860 C = 9384.377382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.005 3.995 3 C -0.176 4.176 4 C 0.120 3.880 5 N -0.518 5.518 6 C 0.134 3.866 7 C -0.208 4.208 8 C 0.564 3.436 9 O -0.558 6.558 10 N -0.709 5.709 11 C 0.175 3.825 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.089 4.089 18 C 0.185 3.815 19 N -0.610 5.610 20 C 0.175 3.825 21 C -0.251 4.251 22 H 0.070 0.930 23 C -0.047 4.047 24 N -0.933 5.933 25 Si 0.957 3.043 26 H -0.270 1.270 27 H -0.294 1.294 28 H -0.295 1.295 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.192 0.808 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.058 0.942 44 H -0.003 1.003 45 H 0.037 0.963 46 H 0.017 0.983 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 14.553 -13.959 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.003 4.003 3 C -0.195 4.195 4 C -0.035 4.035 5 N -0.227 5.227 6 C -0.025 4.025 7 C -0.213 4.213 8 C 0.352 3.648 9 O -0.439 6.439 10 N -0.360 5.360 11 C 0.052 3.948 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.132 4.132 17 C -0.093 4.093 18 C 0.059 3.941 19 N -0.332 5.332 20 C 0.030 3.970 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.242 4.242 24 N -0.581 5.581 25 Si 0.787 3.213 26 H -0.195 1.195 27 H -0.221 1.221 28 H -0.222 1.222 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.194 0.806 33 H 0.209 0.791 34 H 0.179 0.821 35 H 0.243 0.757 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.015 0.985 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.980 14.417 -13.774 21.868 hybrid contribution 0.891 -0.542 0.888 1.369 sum -8.089 13.875 -12.887 20.592 Atomic orbital electron populations 1.21029 0.88538 1.04153 1.03588 1.20788 0.98153 0.91657 0.89715 1.22427 0.95356 0.99300 1.02435 1.23595 0.92541 0.96772 0.90640 1.67749 1.41729 0.99065 1.14176 1.23117 0.90475 0.97149 0.91730 1.20856 0.95369 0.94259 1.10806 1.18201 0.86658 0.83914 0.76066 1.90712 1.14411 1.87519 1.51209 1.45977 1.11341 1.05185 1.73538 1.20068 0.92612 0.79267 1.02855 1.19670 0.99101 0.99197 0.93837 1.21237 0.98432 0.95865 0.96562 1.21326 0.96351 0.98022 0.98873 1.21394 0.99982 0.99999 0.93283 1.21359 0.98011 0.95918 0.97926 1.20983 0.95177 0.96385 0.96722 1.19920 0.94488 0.94652 0.85035 1.44122 1.13006 1.35182 1.40909 1.20606 0.92139 0.88296 0.95921 1.19478 0.89187 0.98109 1.31278 0.91172 1.25464 1.00538 0.95312 1.02896 1.70248 1.38509 1.03365 1.45941 0.85347 0.79964 0.78167 0.77846 1.19455 1.22068 1.22194 0.90598 0.89096 0.90210 0.80636 0.79127 0.82079 0.75702 0.89343 0.91433 0.83390 0.83542 0.86291 0.87326 0.91960 0.92393 0.98509 0.94395 0.96463 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.84 71.24 0.63 -1.48 16 2 C 0.01 0.11 5.95 -19.40 -0.12 -0.01 16 3 C -0.18 -2.58 9.78 22.32 0.22 -2.36 16 4 C 0.12 1.98 11.17 84.69 0.95 2.92 16 5 N -0.52 -11.96 10.35 -194.75 -2.01 -13.98 16 6 C 0.13 3.11 10.70 85.04 0.91 4.02 16 7 C -0.21 -4.89 5.89 -19.99 -0.12 -5.01 16 8 C 0.56 14.82 7.73 86.78 0.67 15.49 16 9 O -0.56 -16.98 13.51 -3.89 -0.05 -17.03 16 10 N -0.71 -17.30 5.32 -469.71 -2.50 -19.80 16 11 C 0.17 4.41 5.16 85.64 0.44 4.85 16 12 C -0.12 -3.32 5.25 -19.86 -0.10 -3.42 16 13 C -0.10 -2.51 9.67 22.27 0.22 -2.29 16 14 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 15 C -0.13 -4.27 10.05 22.27 0.22 -4.04 16 16 C -0.11 -4.64 9.17 22.27 0.20 -4.43 16 17 C -0.09 -3.25 5.87 -19.87 -0.12 -3.37 16 18 C 0.19 7.35 5.10 85.63 0.44 7.79 16 19 N -0.61 -29.79 1.75 -731.32 -1.28 -31.07 16 20 C 0.18 8.72 8.78 127.77 1.12 9.84 16 21 C -0.25 -13.33 8.97 84.03 0.75 -12.58 16 22 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.05 -2.58 5.03 84.86 0.43 -2.15 16 24 N -0.93 -53.65 10.55 21.65 0.23 -53.42 16 25 Si 0.96 44.76 29.58 68.60 2.03 46.79 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.07 8.06 -2.39 -0.02 1.05 16 31 H 0.08 1.78 5.96 -2.39 -0.01 1.77 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.16 3.44 6.47 -2.91 -0.02 3.42 16 35 H 0.41 9.30 6.57 -92.71 -0.61 8.69 16 36 H 0.09 1.98 7.97 -2.38 -0.02 1.96 16 37 H 0.07 1.89 7.02 -2.39 -0.02 1.87 16 38 H 0.15 2.65 8.01 -2.91 -0.02 2.63 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.11 5.56 6.00 -2.91 -0.02 5.54 16 42 H 0.06 2.40 7.84 -2.38 -0.02 2.38 16 43 H 0.06 2.19 7.07 -2.39 -0.02 2.17 16 44 H 0.00 -0.18 7.56 -2.39 -0.02 -0.20 16 45 H 0.04 2.05 6.48 -2.39 -0.02 2.04 16 46 H 0.02 0.75 7.95 -2.39 -0.02 0.73 16 47 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -67.55 385.01 3.77 -63.78 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.39 Total: 24.07 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.97 Total: 0.66 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -5.57 Total: -118.26 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.55 3.77 -63.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501661120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.597 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds