Wall clock time and date at job start Tue Mar 31 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31694 * 119.71553 * 2 1 4 4 C 1.31930 * 121.87617 * 180.28820 * 3 2 1 5 5 C 1.38358 * 121.08040 * 359.68328 * 4 3 2 6 6 C 1.38354 * 119.30182 * 0.02562 * 5 4 3 7 7 C 1.39527 * 119.71690 * 179.70790 * 2 1 3 8 8 C 1.47840 * 120.55632 * 0.02562 * 7 2 1 9 9 O 1.21552 * 120.00143 * 353.36487 * 8 7 2 10 10 N 1.34782 * 119.99738 * 173.35673 * 8 7 2 11 11 C 1.46498 * 119.99910 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47027 * 180.02562 * 11 10 8 13 13 C 1.38265 * 119.99908 * 256.31146 * 12 11 10 14 14 C 1.38207 * 119.99755 * 179.97438 * 13 12 11 15 15 C 1.38258 * 120.00356 * 359.78598 * 14 13 12 16 16 C 1.38221 * 119.99593 * 0.49170 * 15 14 13 17 17 C 1.38217 * 120.00113 * 76.33412 * 12 11 10 18 18 C 1.50700 * 119.99704 * 359.97438 * 17 12 11 19 19 N 1.46497 * 109.46979 * 173.93537 * 18 17 12 20 20 C 1.46496 * 120.00176 * 274.37596 * 19 18 17 21 21 C 1.36941 * 119.99656 * 94.37326 * 19 18 17 22 22 H 1.07994 * 120.00013 * 21.69123 * 21 19 18 23 23 C 1.38815 * 119.99921 * 201.68521 * 21 19 18 24 24 N 1.31619 * 119.99795 * 11.75694 * 23 21 19 25 25 Si 1.86801 * 120.00156 * 191.75024 * 23 21 19 26 26 H 1.48501 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46955 * 120.00245 * 25 23 21 28 28 H 1.48496 * 109.47219 * 240.00558 * 25 23 21 29 29 H 1.08998 * 109.47100 * 264.78275 * 1 2 3 30 30 H 1.08990 * 109.47242 * 24.78596 * 1 2 3 31 31 H 1.08999 * 109.47145 * 144.78698 * 1 2 3 32 32 H 1.08003 * 119.45682 * 179.69943 * 4 3 2 33 33 H 1.08000 * 120.34748 * 179.97438 * 5 4 3 34 34 H 1.07995 * 120.85276 * 179.97438 * 6 5 4 35 35 H 0.97000 * 119.99526 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46805 * 60.00409 * 11 10 8 37 37 H 1.09003 * 109.47397 * 300.00219 * 11 10 8 38 38 H 1.07990 * 119.99999 * 0.02562 * 13 12 11 39 39 H 1.07995 * 120.00061 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.00424 * 180.25493 * 15 14 13 41 41 H 1.07999 * 119.99966 * 179.76009 * 16 15 14 42 42 H 1.08998 * 109.47436 * 293.93744 * 18 17 12 43 43 H 1.09004 * 109.47110 * 53.94106 * 18 17 12 44 44 H 1.09001 * 109.47215 * 86.79441 * 20 19 18 45 45 H 1.09006 * 109.47452 * 206.79201 * 20 19 18 46 46 H 1.08996 * 109.47573 * 326.79316 * 20 19 18 47 47 H 0.97001 * 119.99918 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4782 1.1935 -0.0056 5 6 4.2366 0.0363 -0.0053 6 6 3.5987 -1.1914 0.0006 7 6 2.1987 -1.2118 0.0062 8 6 1.4656 -2.4956 0.0122 9 8 0.2562 -2.5043 0.1334 10 7 2.1384 -3.6563 -0.1170 11 6 1.4119 -4.9285 -0.1116 12 6 2.3886 -6.0653 -0.2693 13 6 2.5071 -6.7111 -1.4861 14 6 3.4032 -7.7533 -1.6308 15 6 4.1842 -8.1473 -0.5602 16 6 4.0616 -7.5054 0.6578 17 6 3.1655 -6.4627 0.8025 18 6 3.0363 -5.7587 2.1287 19 7 3.8502 -6.4515 3.1306 20 6 3.2980 -7.5967 3.8584 21 6 5.1272 -6.0286 3.3867 22 1 5.4215 -5.0193 3.1398 23 6 6.0434 -6.8972 3.9639 24 7 5.7671 -8.1809 4.0532 25 14 7.6685 -6.2442 4.6136 26 1 7.7351 -4.7768 4.3953 27 1 7.7728 -6.5333 6.0664 28 1 8.7892 -6.9031 3.8960 29 1 -0.3633 -0.0934 1.0234 30 1 -0.3633 0.9329 -0.4308 31 1 -0.3633 -0.8396 -0.5926 32 1 3.9735 2.1533 -0.0103 33 1 5.3152 0.0908 -0.0104 34 1 4.1661 -2.1103 0.0005 35 1 3.1035 -3.6493 -0.2134 36 1 0.6998 -4.9437 -0.9367 37 1 0.8771 -5.0376 0.8319 38 1 1.9001 -6.4006 -2.3236 39 1 3.4961 -8.2575 -2.5814 40 1 4.8874 -8.9590 -0.6745 41 1 4.6689 -7.8157 1.4952 42 1 3.3812 -4.7295 2.0290 43 1 1.9924 -5.7633 2.4424 44 1 3.4667 -8.5077 3.2843 45 1 3.7889 -7.6821 4.8280 46 1 2.2276 -7.4524 4.0047 47 1 6.4074 -8.7880 4.4561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501665676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:03 Heat of formation + Delta-G solvation = 39.784116 kcal Electronic energy + Delta-G solvation = -29111.004539 eV Core-core repulsion = 25258.961936 eV Total energy + Delta-G solvation = -3852.042603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80575 -40.66187 -39.73201 -37.37907 -36.18695 -34.10082 -33.68762 -33.50413 -32.12261 -31.46862 -28.91923 -28.08691 -27.59974 -26.82634 -25.22935 -23.84471 -23.17169 -22.24981 -21.81893 -21.40013 -19.00465 -18.71899 -17.87367 -17.40323 -17.08699 -16.93345 -16.57284 -16.45619 -16.01420 -15.79272 -15.48386 -15.31416 -15.07154 -14.75517 -14.60490 -14.40179 -14.14290 -13.98501 -13.60829 -13.55831 -13.35530 -13.29761 -13.24553 -13.03128 -12.87958 -12.82802 -12.56844 -12.29507 -12.03820 -11.93601 -11.78657 -11.62097 -11.05246 -10.95152 -10.59955 -10.47712 -10.23733 -9.88320 -9.61824 -9.39157 -8.82816 -7.82385 -5.28031 -0.36237 0.18467 0.40911 0.67103 1.45933 1.49087 1.57072 1.81869 2.15823 2.51398 2.79412 3.02917 3.32464 3.34052 3.61178 3.65884 3.69434 3.80608 3.87370 4.07329 4.08839 4.20731 4.38693 4.41981 4.46112 4.60187 4.63396 4.70190 4.73204 4.76706 4.79207 4.82976 4.85132 5.02630 5.04218 5.11433 5.17035 5.22757 5.33477 5.38433 5.41223 5.59950 5.64364 5.65788 5.70973 5.85408 5.98893 6.27166 6.35961 6.43784 6.89267 7.10937 7.16222 7.85906 8.31175 9.22335 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.003627 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.869346 B = 7716.998729 C = 9360.561269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 N -0.513 5.513 4 C 0.124 3.876 5 C -0.180 4.180 6 C -0.041 4.041 7 C -0.205 4.205 8 C 0.562 3.438 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.174 3.826 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.114 4.114 17 C -0.089 4.089 18 C 0.185 3.815 19 N -0.609 5.609 20 C 0.176 3.824 21 C -0.253 4.253 22 H 0.071 0.929 23 C -0.045 4.045 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.267 1.267 27 H -0.296 1.296 28 H -0.294 1.294 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.193 0.807 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.056 0.944 44 H -0.002 1.002 45 H 0.035 0.965 46 H 0.015 0.985 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 12.114 -13.517 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.031 3.969 3 N -0.223 5.223 4 C -0.033 4.033 5 C -0.199 4.199 6 C -0.067 4.067 7 C -0.211 4.211 8 C 0.350 3.650 9 O -0.438 6.438 10 N -0.359 5.359 11 C 0.051 3.949 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.133 4.133 17 C -0.092 4.092 18 C 0.059 3.941 19 N -0.332 5.332 20 C 0.031 3.969 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.240 4.240 24 N -0.580 5.580 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.221 1.221 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.210 0.790 33 H 0.191 0.809 34 H 0.171 0.829 35 H 0.244 0.756 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.025 12.748 -13.325 19.400 hybrid contribution 2.150 -1.205 0.824 2.598 sum -3.875 11.543 -12.502 17.451 Atomic orbital electron populations 1.20965 0.87652 1.03818 1.03697 1.21660 0.97972 0.87046 0.90191 1.67691 1.11422 1.28497 1.14721 1.23620 0.88741 1.00584 0.90380 1.22479 1.03531 0.92086 1.01832 1.22096 0.92483 1.00582 0.91533 1.20743 0.95297 0.94254 1.10770 1.18182 0.86777 0.83850 0.76143 1.90707 1.14605 1.87430 1.51040 1.45923 1.11532 1.05008 1.73388 1.20068 0.92507 0.79488 1.02798 1.19667 0.99178 0.98988 0.93937 1.21228 0.98595 0.95832 0.96503 1.21318 0.96429 0.97885 0.98952 1.21392 0.99947 1.00017 0.93376 1.21421 0.98122 0.95782 0.97953 1.20973 0.95160 0.96312 0.96736 1.19925 0.94262 0.94658 0.85247 1.44068 1.12374 1.35118 1.41594 1.20569 0.92276 0.88484 0.95585 1.19472 0.87617 0.95256 1.35936 0.91172 1.25594 1.00551 0.95236 1.02645 1.70211 1.36307 1.02332 1.49181 0.85311 0.80338 0.78177 0.77269 1.19106 1.22303 1.22139 0.90515 0.90474 0.88894 0.79028 0.80903 0.82904 0.75604 0.89413 0.91498 0.83469 0.83620 0.86390 0.86946 0.91811 0.92650 0.98389 0.94626 0.96673 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 8.92 71.24 0.64 -1.82 16 2 C 0.17 4.18 6.82 42.89 0.29 4.48 16 3 N -0.51 -11.78 10.26 -182.83 -1.88 -13.66 16 4 C 0.12 2.05 11.17 84.71 0.95 2.99 16 5 C -0.18 -2.70 10.10 22.33 0.23 -2.48 16 6 C -0.04 -0.77 9.63 22.73 0.22 -0.55 16 7 C -0.21 -4.88 5.89 -19.99 -0.12 -5.00 16 8 C 0.56 14.81 7.70 86.78 0.67 15.48 16 9 O -0.56 -17.28 13.36 -3.88 -0.05 -17.33 16 10 N -0.71 -16.73 5.24 -469.71 -2.46 -19.20 16 11 C 0.17 4.33 5.16 85.63 0.44 4.77 16 12 C -0.12 -3.24 5.25 -19.86 -0.10 -3.34 16 13 C -0.10 -2.47 9.67 22.27 0.22 -2.26 16 14 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 15 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 16 C -0.11 -4.59 9.09 22.27 0.20 -4.38 16 17 C -0.09 -3.16 5.87 -19.87 -0.12 -3.27 16 18 C 0.19 7.19 5.08 85.63 0.43 7.63 16 19 N -0.61 -29.12 1.74 -731.32 -1.27 -30.40 16 20 C 0.18 8.61 8.71 127.77 1.11 9.73 16 21 C -0.25 -13.06 9.02 84.03 0.76 -12.30 16 22 H 0.07 3.52 7.82 -2.91 -0.02 3.50 16 23 C -0.05 -2.40 5.08 84.86 0.43 -1.97 16 24 N -0.93 -52.56 10.61 21.65 0.23 -52.33 16 25 Si 0.96 43.33 29.57 68.60 2.03 45.36 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 2.36 5.78 -2.39 -0.01 2.35 16 32 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.15 2.38 6.57 -2.91 -0.02 2.36 16 35 H 0.41 8.69 6.61 -92.71 -0.61 8.08 16 36 H 0.09 1.95 7.97 -2.39 -0.02 1.93 16 37 H 0.07 1.86 7.06 -2.39 -0.02 1.84 16 38 H 0.15 2.59 8.01 -2.92 -0.02 2.57 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.11 5.66 5.95 -2.91 -0.02 5.64 16 42 H 0.06 2.37 7.77 -2.39 -0.02 2.35 16 43 H 0.06 2.06 7.13 -2.39 -0.02 2.05 16 44 H 0.00 -0.12 7.38 -2.39 -0.02 -0.13 16 45 H 0.03 1.90 6.63 -2.38 -0.02 1.88 16 46 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 47 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -65.90 384.84 3.67 -62.23 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.38 Total: 24.65 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.69 Total: 0.67 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.38 Total: -115.58 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.05 Total: -17.33 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.90 3.67 -62.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501665676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.012 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds