Wall clock time and date at job start Tue Mar 31 2020 23:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 2 9 9 O 1.21278 * 119.99813 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99647 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46607 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47677 * 294.99722 * 12 11 10 14 14 C 1.52999 * 109.47046 * 174.99875 * 12 11 10 15 15 O 1.42906 * 109.47368 * 305.00349 * 14 12 11 16 16 N 1.46902 * 109.47100 * 55.00240 * 12 11 10 17 17 C 1.46902 * 110.99920 * 204.99567 * 16 12 11 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 12 19 19 O 1.21290 * 120.00044 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99629 * 180.02562 * 18 17 16 21 21 C 1.37108 * 119.99654 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99742 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99602 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99734 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00649 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46968 * 89.99989 * 25 23 21 27 27 H 1.48499 * 109.47169 * 210.00308 * 25 23 21 28 28 H 1.48503 * 109.46845 * 330.00311 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 32 32 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 33 33 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 36 36 H 0.96997 * 120.00400 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47203 * 299.99459 * 11 10 8 38 38 H 1.08998 * 109.47119 * 60.00240 * 11 10 8 39 39 H 1.09003 * 109.46995 * 65.00004 * 14 12 11 40 40 H 1.08994 * 109.47264 * 185.00002 * 14 12 11 41 41 H 0.96689 * 114.00219 * 179.97438 * 15 14 12 42 42 H 1.00898 * 111.00021 * 328.94788 * 16 12 11 43 43 H 1.08995 * 109.47297 * 300.00268 * 17 16 12 44 44 H 1.09002 * 109.46993 * 59.99627 * 17 16 12 45 45 H 0.96997 * 120.00730 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00351 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6989 -2.9558 -1.4355 9 8 1.9399 -2.2012 -2.3538 10 7 1.2923 -4.2158 -1.6876 11 6 1.1421 -4.6740 -3.0710 12 6 0.6734 -6.1305 -3.0777 13 1 1.4488 -6.7638 -2.6468 14 6 0.3968 -6.5706 -4.5166 15 8 -0.5341 -5.6696 -5.1198 16 7 -0.5562 -6.2528 -2.2833 17 6 -0.7163 -7.6191 -1.7679 18 6 -1.9852 -7.7056 -0.9596 19 8 -2.6874 -6.7257 -0.8263 20 7 -2.3397 -8.8719 -0.3848 21 6 -3.4944 -8.9508 0.3503 22 1 -4.1196 -8.0782 0.4689 23 6 -3.8602 -10.1534 0.9424 24 7 -4.9667 -10.2289 1.6474 25 14 -2.7791 -11.6628 0.7366 26 1 -1.7817 -11.7109 1.8358 27 1 -3.6219 -12.8848 0.7790 28 1 -2.0744 -11.5926 -0.5686 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9741 2.1211 0.0007 33 1 4.5084 1.2891 0.0050 34 1 2.5902 -3.1055 0.4978 35 1 0.8958 -2.5604 0.5018 36 1 1.0992 -4.8192 -0.9531 37 1 0.4063 -4.0528 -3.5816 38 1 2.1005 -4.5988 -3.5847 39 1 1.3277 -6.5646 -5.0837 40 1 -0.0210 -7.5773 -4.5147 41 1 -0.7559 -5.8878 -6.0353 42 1 -0.5701 -5.5791 -1.5323 43 1 -0.7682 -8.3184 -2.6024 44 1 0.1350 -7.8709 -1.1354 45 1 -1.7784 -9.6558 -0.4916 46 1 -5.2223 -11.0684 2.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507237632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:15 Heat of formation + Delta-G solvation = -24.552454 kcal Electronic energy + Delta-G solvation = -29082.718167 eV Core-core repulsion = 24817.036458 eV Total energy + Delta-G solvation = -4265.681709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48612 -39.94237 -38.73565 -37.70846 -35.71537 -34.27874 -33.82857 -33.63582 -32.24556 -31.74265 -30.46117 -28.01387 -27.10955 -26.58326 -25.51146 -23.82852 -21.62247 -21.06617 -20.75356 -19.88027 -19.48432 -18.54048 -17.79556 -17.61761 -17.12236 -16.47704 -15.92674 -15.71269 -15.62147 -15.12036 -14.93872 -14.77634 -14.29584 -14.23964 -14.09436 -13.82894 -13.70064 -13.58380 -13.17118 -13.12375 -12.90340 -12.81114 -12.62812 -12.38432 -12.23373 -12.17824 -11.82529 -11.78484 -11.25064 -11.17807 -10.77605 -10.66522 -10.43850 -10.05226 -10.03456 -9.64747 -9.39046 -9.37283 -8.68135 -8.65432 -8.31170 -8.24307 -6.37737 -3.89667 1.61396 2.13679 2.26110 2.72091 2.91948 2.95943 2.99854 3.09329 3.64054 3.83624 4.03503 4.16686 4.24213 4.30921 4.45292 4.53997 4.65476 4.69209 4.83674 4.94102 4.97691 5.11664 5.15398 5.23060 5.26444 5.40452 5.47104 5.48913 5.50544 5.56570 5.62399 5.66743 5.80204 5.90019 5.99232 6.05864 6.48746 6.75113 6.91040 7.08271 7.36439 7.50598 7.55114 7.63365 7.84266 8.06886 8.52030 8.87765 9.34771 9.74080 10.75230 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002379 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.419984 B =11767.481832 C =13109.789725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.098 3.902 3 C -0.277 4.277 4 C 0.050 3.950 5 N -0.292 5.292 6 N -0.357 5.357 7 C 0.112 3.888 8 C 0.499 3.501 9 O -0.518 6.518 10 N -0.728 5.728 11 C 0.124 3.876 12 C 0.076 3.924 13 H 0.062 0.938 14 C 0.091 3.909 15 O -0.554 6.554 16 N -0.653 5.653 17 C 0.044 3.956 18 C 0.448 3.552 19 O -0.562 6.562 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.374 0.626 42 H 0.349 0.651 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.996 11.881 -6.326 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.306 4.306 4 C -0.137 4.137 5 N -0.112 5.112 6 N -0.140 5.140 7 C -0.014 4.014 8 C 0.283 3.717 9 O -0.392 6.392 10 N -0.383 5.383 11 C 0.000 4.000 12 C -0.035 4.035 13 H 0.079 0.921 14 C 0.012 3.988 15 O -0.358 6.358 16 N -0.288 5.288 17 C -0.088 4.088 18 C 0.234 3.766 19 O -0.444 6.444 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.199 0.801 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.235 0.765 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.220 0.780 42 H 0.171 0.829 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.849 11.968 -6.725 21.734 hybrid contribution 0.811 -1.467 0.374 1.718 sum 17.660 10.501 -6.351 21.505 Atomic orbital electron populations 1.20506 0.87222 1.04371 1.03404 1.21123 0.94748 0.87150 0.99869 1.21197 0.92318 0.98861 1.18185 1.23809 0.98152 0.92134 0.99588 1.77350 0.96172 1.13251 1.24452 1.47898 1.04161 1.04320 1.57581 1.21457 1.03747 0.80593 0.95638 1.20751 0.77420 0.82102 0.91447 1.90779 1.48482 1.54001 1.45980 1.45978 1.69345 1.13346 1.09594 1.21495 1.01870 0.94568 0.82024 1.21896 0.91341 0.95468 0.94757 0.92069 1.22062 0.91702 0.92998 0.92060 1.86603 1.64813 1.53403 1.30951 1.59997 1.35422 1.04682 1.28702 1.21835 0.96858 0.91608 0.98525 1.19630 0.88204 0.84375 0.84393 1.90581 1.54407 1.36075 1.63318 1.42209 1.23277 1.09812 1.47575 1.19426 0.98697 0.99534 1.25796 0.86250 1.25050 0.96514 0.97802 0.96790 1.69621 1.22406 1.27117 1.32788 0.86671 0.80753 0.83389 0.78543 1.19651 1.20124 1.19530 0.89884 0.91024 0.89374 0.83549 0.80059 0.85654 0.85616 0.76535 0.88932 0.90942 0.93614 0.93031 0.77980 0.82906 0.89412 0.93717 0.79726 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.90 36.01 0.36 -0.45 16 2 C 0.10 1.09 6.93 -82.26 -0.57 0.52 16 3 C -0.28 -2.92 10.72 -40.01 -0.43 -3.35 16 4 C 0.05 0.55 12.03 -17.37 -0.21 0.34 16 5 N -0.29 -3.91 12.58 30.62 0.39 -3.52 16 6 N -0.36 -4.31 3.10 -58.31 -0.18 -4.49 16 7 C 0.11 1.04 6.54 -5.20 -0.03 1.00 16 8 C 0.50 5.86 7.90 -10.99 -0.09 5.77 16 9 O -0.52 -8.39 16.43 5.56 0.09 -8.30 16 10 N -0.73 -7.18 4.99 -60.29 -0.30 -7.48 16 11 C 0.12 1.35 5.20 -4.04 -0.02 1.33 16 12 C 0.08 0.79 2.60 -67.71 -0.18 0.61 16 13 H 0.06 0.52 7.80 -51.93 -0.40 0.11 16 14 C 0.09 0.88 6.80 37.16 0.25 1.14 16 15 O -0.55 -6.35 12.64 -35.23 -0.45 -6.79 16 16 N -0.65 -9.12 5.87 -107.99 -0.63 -9.75 16 17 C 0.04 0.65 5.96 -4.97 -0.03 0.63 16 18 C 0.45 9.55 7.82 -10.99 -0.09 9.47 16 19 O -0.56 -14.42 15.78 5.55 0.09 -14.34 16 20 N -0.59 -13.32 5.09 -10.96 -0.06 -13.38 16 21 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.09 13.96 55.50 0.77 -24.32 16 25 Si 0.88 18.65 27.74 -169.99 -4.71 13.94 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 28 H -0.27 -5.17 6.52 56.52 0.37 -4.81 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.64 7.72 -51.93 -0.40 0.24 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.13 0.83 7.66 -51.92 -0.40 0.43 16 36 H 0.40 3.14 7.37 -40.82 -0.30 2.84 16 37 H 0.09 1.27 7.39 -51.93 -0.38 0.89 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 41 H 0.37 2.65 9.12 45.56 0.42 3.06 16 42 H 0.35 4.96 6.41 -39.29 -0.25 4.71 16 43 H 0.09 1.17 7.36 -51.93 -0.38 0.79 16 44 H 0.04 0.53 8.06 -51.93 -0.42 0.12 16 45 H 0.37 7.28 5.76 -40.82 -0.24 7.04 16 46 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -39.16 391.50 -6.03 -45.19 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -5.66 Total: 17.83 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.28 Total: 9.50 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.01 Total: -62.93 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.27 Total: -29.43 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.16 -6.03 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507237632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.641 kcal (2) G-P(sol) polarization free energy of solvation -39.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds