Wall clock time and date at job start Tue Mar 31 2020 23:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 2 9 9 O 1.21278 * 119.99813 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99647 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46607 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47677 * 294.99722 * 12 11 10 14 14 C 1.52999 * 109.47046 * 174.99875 * 12 11 10 15 15 O 1.42906 * 109.47368 * 305.00349 * 14 12 11 16 16 N 1.46902 * 109.47100 * 55.00240 * 12 11 10 17 17 C 1.46902 * 110.99920 * 204.99567 * 16 12 11 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 12 19 19 O 1.21290 * 120.00044 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99629 * 180.02562 * 18 17 16 21 21 C 1.37108 * 119.99654 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99742 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99602 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99734 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00649 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46968 * 89.99989 * 25 23 21 27 27 H 1.48499 * 109.47169 * 210.00308 * 25 23 21 28 28 H 1.48503 * 109.46845 * 330.00311 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 32 32 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 33 33 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 36 36 H 0.96997 * 120.00400 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47203 * 299.99459 * 11 10 8 38 38 H 1.08998 * 109.47119 * 60.00240 * 11 10 8 39 39 H 1.09003 * 109.46995 * 65.00004 * 14 12 11 40 40 H 1.08994 * 109.47264 * 185.00002 * 14 12 11 41 41 H 0.96689 * 114.00219 * 179.97438 * 15 14 12 42 42 H 1.00898 * 111.00021 * 328.94788 * 16 12 11 43 43 H 1.08995 * 109.47297 * 300.00268 * 17 16 12 44 44 H 1.09002 * 109.46993 * 59.99627 * 17 16 12 45 45 H 0.96997 * 120.00730 * 359.97438 * 20 18 17 46 46 H 0.96998 * 120.00351 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6989 -2.9558 -1.4355 9 8 1.9399 -2.2012 -2.3538 10 7 1.2923 -4.2158 -1.6876 11 6 1.1421 -4.6740 -3.0710 12 6 0.6734 -6.1305 -3.0777 13 1 1.4488 -6.7638 -2.6468 14 6 0.3968 -6.5706 -4.5166 15 8 -0.5341 -5.6696 -5.1198 16 7 -0.5562 -6.2528 -2.2833 17 6 -0.7163 -7.6191 -1.7679 18 6 -1.9852 -7.7056 -0.9596 19 8 -2.6874 -6.7257 -0.8263 20 7 -2.3397 -8.8719 -0.3848 21 6 -3.4944 -8.9508 0.3503 22 1 -4.1196 -8.0782 0.4689 23 6 -3.8602 -10.1534 0.9424 24 7 -4.9667 -10.2289 1.6474 25 14 -2.7791 -11.6628 0.7366 26 1 -1.7817 -11.7109 1.8358 27 1 -3.6219 -12.8848 0.7790 28 1 -2.0744 -11.5926 -0.5686 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9741 2.1211 0.0007 33 1 4.5084 1.2891 0.0050 34 1 2.5902 -3.1055 0.4978 35 1 0.8958 -2.5604 0.5018 36 1 1.0992 -4.8192 -0.9531 37 1 0.4063 -4.0528 -3.5816 38 1 2.1005 -4.5988 -3.5847 39 1 1.3277 -6.5646 -5.0837 40 1 -0.0210 -7.5773 -4.5147 41 1 -0.7559 -5.8878 -6.0353 42 1 -0.5701 -5.5791 -1.5323 43 1 -0.7682 -8.3184 -2.6024 44 1 0.1350 -7.8709 -1.1354 45 1 -1.7784 -9.6558 -0.4916 46 1 -5.2223 -11.0684 2.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507237632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:14 Heat of formation + Delta-G solvation = -60.860059 kcal Electronic energy + Delta-G solvation = -29084.292583 eV Core-core repulsion = 24817.036458 eV Total energy + Delta-G solvation = -4267.256125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29294 -40.89048 -40.26600 -38.78209 -36.62332 -35.99654 -35.00386 -34.48484 -33.72398 -33.00178 -31.46456 -28.84768 -28.02883 -27.85288 -26.38416 -25.42488 -22.46466 -21.90397 -21.60269 -21.29519 -20.68225 -20.28033 -18.77143 -18.42942 -18.02072 -17.64860 -17.05483 -16.87103 -16.65483 -16.58682 -15.96227 -15.88954 -15.48482 -15.11616 -15.01112 -14.95557 -14.68924 -14.59572 -14.47886 -14.26069 -14.06272 -13.82843 -13.60531 -13.55829 -13.24566 -13.02193 -12.94688 -12.93197 -12.69254 -12.40011 -12.02113 -11.96992 -11.60672 -11.49453 -11.40302 -10.77889 -10.41920 -10.28277 -10.23342 -10.22764 -9.46579 -9.32933 -8.39716 -6.00718 0.79449 1.31345 1.35981 1.36793 1.40306 1.46008 1.92468 1.97717 2.10313 2.24389 2.66547 3.17073 3.31510 3.43739 3.51240 3.58679 3.74164 3.78786 4.04776 4.07285 4.14349 4.21147 4.29246 4.35509 4.42642 4.51252 4.58631 4.66024 4.68727 4.77055 4.77856 4.82044 4.97241 4.98949 5.20905 5.24258 5.53958 5.72121 5.90368 5.98961 6.03166 6.28471 6.31523 6.61181 6.73110 6.90197 6.98787 7.05863 7.41812 7.98725 8.77877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002379 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.419984 B =11767.481832 C =13109.789725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.083 3.917 3 C -0.288 4.288 4 C 0.044 3.956 5 N -0.332 5.332 6 N -0.368 5.368 7 C 0.109 3.891 8 C 0.499 3.501 9 O -0.569 6.569 10 N -0.715 5.715 11 C 0.131 3.869 12 C 0.081 3.919 13 H 0.096 0.904 14 C 0.085 3.915 15 O -0.584 6.584 16 N -0.677 5.677 17 C 0.059 3.941 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.590 5.590 21 C -0.326 4.326 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.279 1.279 28 H -0.229 1.229 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.209 0.791 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.390 0.610 42 H 0.344 0.656 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.892 10.013 -6.964 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 C -0.317 4.317 4 C -0.142 4.142 5 N -0.152 5.152 6 N -0.151 5.151 7 C -0.016 4.016 8 C 0.285 3.715 9 O -0.447 6.447 10 N -0.369 5.369 11 C 0.007 3.993 12 C -0.029 4.029 13 H 0.113 0.887 14 C 0.006 3.994 15 O -0.391 6.391 16 N -0.312 5.312 17 C -0.073 4.073 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.205 1.205 28 H -0.152 1.152 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.226 0.774 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.238 0.762 42 H 0.165 0.835 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.767 10.073 -7.381 23.382 hybrid contribution -0.171 -0.728 0.539 0.922 sum 19.596 9.346 -6.842 22.763 Atomic orbital electron populations 1.20573 0.85632 1.04415 1.04564 1.21664 0.95967 0.87323 0.99452 1.21583 0.92201 0.99906 1.17967 1.24370 0.99481 0.91904 0.98460 1.77266 0.97375 1.14486 1.26111 1.48117 1.03940 1.05278 1.57774 1.21717 1.05678 0.80031 0.94218 1.21195 0.76352 0.82007 0.91977 1.90752 1.50955 1.55385 1.47626 1.45881 1.68220 1.13049 1.09790 1.21347 1.01113 0.94647 0.82205 1.22023 0.90621 0.95284 0.94924 0.88666 1.22245 0.92654 0.92674 0.91783 1.86566 1.65567 1.54480 1.32485 1.59969 1.38126 1.04181 1.28934 1.21764 0.93922 0.92754 0.98855 1.20976 0.89503 0.82877 0.82992 1.90564 1.56639 1.37865 1.64696 1.42025 1.22254 1.11289 1.47667 1.18986 1.00317 0.98156 1.28111 0.92743 1.26136 0.98132 1.01773 0.95511 1.69812 1.25080 1.28569 1.34190 0.85363 0.78565 0.76743 0.80815 1.18002 1.20454 1.15238 0.88059 0.91948 0.88344 0.81480 0.77415 0.83515 0.83089 0.75081 0.92214 0.90379 0.90847 0.92536 0.76170 0.83499 0.86956 0.89327 0.77442 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.90 71.24 0.71 -0.79 16 2 C 0.08 1.80 6.93 41.41 0.29 2.09 16 3 C -0.29 -5.88 10.72 21.99 0.24 -5.64 16 4 C 0.04 0.94 12.03 85.24 1.02 1.97 16 5 N -0.33 -8.81 12.58 -57.03 -0.72 -9.52 16 6 N -0.37 -8.74 3.10 -338.40 -1.05 -9.79 16 7 C 0.11 1.91 6.54 85.63 0.56 2.47 16 8 C 0.50 11.50 7.90 87.66 0.69 12.19 16 9 O -0.57 -18.77 16.43 -3.02 -0.05 -18.82 16 10 N -0.72 -13.12 4.99 -463.05 -2.31 -15.43 16 11 C 0.13 2.67 5.20 86.38 0.45 3.12 16 12 C 0.08 1.42 2.60 44.92 0.12 1.53 16 13 H 0.10 1.08 7.80 -2.39 -0.02 1.07 16 14 C 0.09 1.38 6.80 71.98 0.49 1.87 16 15 O -0.58 -12.61 12.64 -148.98 -1.88 -14.50 16 16 N -0.68 -17.27 5.87 -495.57 -2.91 -20.18 16 17 C 0.06 1.51 5.96 85.56 0.51 2.02 16 18 C 0.45 18.63 7.82 87.66 0.69 19.32 16 19 O -0.61 -32.27 15.78 -3.06 -0.05 -32.31 16 20 N -0.59 -25.99 5.09 -306.99 -1.56 -27.55 16 21 C -0.33 -18.40 10.16 84.04 0.85 -17.55 16 22 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 23 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 24 N -0.94 -55.23 13.96 21.66 0.30 -54.93 16 25 Si 0.97 36.94 27.74 68.60 1.90 38.84 16 26 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 28 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.10 7.72 -2.39 -0.02 1.09 16 31 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.15 1.79 7.66 -2.38 -0.02 1.77 16 36 H 0.41 5.56 7.37 -92.71 -0.68 4.88 16 37 H 0.06 1.65 7.39 -2.39 -0.02 1.63 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.86 7.35 -2.39 -0.02 0.85 16 41 H 0.39 5.03 9.12 -74.06 -0.68 4.36 16 42 H 0.34 9.25 6.41 -89.70 -0.58 8.67 16 43 H 0.11 2.42 7.36 -2.39 -0.02 2.40 16 44 H 0.09 1.58 8.06 -2.39 -0.02 1.56 16 45 H 0.39 13.90 5.76 -92.71 -0.53 13.36 16 46 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -92.87 391.50 -2.72 -95.59 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: -1.47 Total: 46.45 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.08 Total: 22.15 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -8.25 Total: -137.40 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -1.98 Total: -65.63 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 1.90 Total: 38.84 kcal Total: -92.87 -2.72 -95.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507237632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.730 kcal (2) G-P(sol) polarization free energy of solvation -92.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds