Wall clock time and date at job start Tue Mar 31 2020 22:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 119.22853 * 2 1 4 4 C 1.33789 * 121.71687 * 179.97438 * 3 2 1 5 5 C 1.40538 * 120.83017 * 180.02562 * 4 3 2 6 6 C 1.36124 * 119.81737 * 179.97438 * 5 4 3 7 7 C 1.39342 * 121.09532 * 359.97438 * 6 5 4 8 8 C 1.36141 * 120.83607 * 0.02644 * 7 6 5 9 9 C 1.40546 * 119.62034 * 359.97438 * 8 7 6 10 10 C 1.40493 * 121.22566 * 180.30493 * 9 8 7 11 11 C 1.39040 * 117.96140 * 180.20500 * 10 9 8 12 12 C 1.47763 * 120.26482 * 179.74293 * 11 10 9 13 13 O 1.21567 * 119.99827 * 134.16033 * 12 11 10 14 14 N 1.34777 * 119.99940 * 314.15384 * 12 11 10 15 15 C 1.47023 * 125.64997 * 354.87908 * 14 12 11 16 16 C 1.54326 * 107.26951 * 181.02070 * 15 14 12 17 17 C 1.55158 * 103.10286 * 22.10592 * 16 15 14 18 18 H 1.08996 * 111.00864 * 82.66064 * 17 16 15 19 19 C 1.53000 * 111.00345 * 206.51447 * 17 16 15 20 20 N 1.46498 * 109.47209 * 184.99620 * 19 17 16 21 21 C 1.36938 * 119.99849 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00370 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99679 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00440 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00012 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46954 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47237 * 119.99623 * 25 23 21 28 28 H 1.48502 * 109.47204 * 240.00178 * 25 23 21 29 29 C 1.47426 * 125.64580 * 174.82995 * 14 12 11 30 30 H 1.09002 * 109.46884 * 273.89847 * 1 2 3 31 31 H 1.09005 * 109.47236 * 33.89285 * 1 2 3 32 32 H 1.08994 * 109.47238 * 153.89556 * 1 2 3 33 33 H 1.08008 * 120.08809 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.45340 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.58414 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.19063 * 180.02562 * 8 7 6 37 37 H 1.07997 * 121.01433 * 359.97380 * 10 9 8 38 38 H 1.08998 * 109.88398 * 61.60393 * 15 14 12 39 39 H 1.09000 * 109.88089 * 300.43405 * 15 14 12 40 40 H 1.09002 * 110.71769 * 140.55061 * 16 15 14 41 41 H 1.08998 * 110.72093 * 263.64872 * 16 15 14 42 42 H 1.08998 * 109.46611 * 304.99710 * 19 17 16 43 43 H 1.09000 * 109.47586 * 64.99308 * 19 17 16 44 44 H 0.96999 * 119.99905 * 0.02562 * 20 19 17 45 45 H 0.96996 * 120.00713 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.37308 * 274.75192 * 29 14 12 47 47 H 1.09002 * 110.36720 * 36.96557 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1496 2.4367 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2605 1.2975 0.0032 8 6 5.6511 0.0801 0.0027 9 6 4.2476 0.0059 0.0016 10 6 3.5837 -1.2323 0.0075 11 6 2.1933 -1.2266 0.0016 12 6 1.4434 -2.4998 0.0016 13 8 0.4997 -2.6493 0.7533 14 7 1.8054 -3.4951 -0.8318 15 6 2.8519 -3.4128 -1.8612 16 6 2.8950 -4.7774 -2.5808 17 6 1.4892 -5.3693 -2.2969 18 1 0.7521 -4.9795 -2.9989 19 6 1.5209 -6.8986 -2.3314 20 7 0.1599 -7.4189 -2.1786 21 6 -0.0606 -8.7704 -2.1798 22 1 0.7688 -9.4528 -2.2930 23 6 -1.3502 -9.2633 -2.0355 24 7 -2.3611 -8.4317 -1.8981 25 14 -1.6510 -11.1069 -2.0365 26 1 -0.3588 -11.8192 -2.2045 27 1 -2.2726 -11.5077 -0.7488 28 1 -2.5604 -11.4595 -3.1562 29 6 1.2183 -4.8471 -0.8615 30 1 -0.3633 0.0699 1.0253 31 1 -0.3634 0.8531 -0.5731 32 1 -0.3633 -0.9228 -0.4522 33 1 3.5841 3.3569 0.0015 34 1 6.0170 3.4255 0.0029 35 1 7.3390 1.3537 0.0036 36 1 6.2427 -0.8235 0.0040 37 1 4.1365 -2.1601 0.0125 38 1 3.8157 -3.2092 -1.3946 39 1 2.6091 -2.6252 -2.5745 40 1 3.0481 -4.6439 -3.6517 41 1 3.6735 -5.4122 -2.1575 42 1 1.9325 -7.2320 -3.2841 43 1 2.1445 -7.2676 -1.5172 44 1 -0.5850 -6.8060 -2.0773 45 1 -3.2623 -8.7761 -1.7977 46 1 1.7070 -5.4892 -0.1288 47 1 0.1466 -4.7996 -0.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567126744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:45 Heat of formation + Delta-G solvation = 34.576025 kcal Electronic energy + Delta-G solvation = -28440.097076 eV Core-core repulsion = 24587.828634 eV Total energy + Delta-G solvation = -3852.268442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39579 -39.92302 -38.01433 -37.13433 -34.79536 -33.94536 -32.30283 -32.19824 -30.74328 -30.27601 -28.74878 -28.07983 -25.94530 -24.67182 -23.33228 -22.91754 -22.49079 -21.99469 -20.35691 -19.93225 -18.50114 -17.70750 -17.12568 -16.87649 -16.23995 -16.06465 -15.49735 -15.17187 -14.89550 -14.62879 -14.57809 -14.30174 -13.88129 -13.65250 -13.43814 -13.26197 -13.25199 -13.07235 -12.82771 -12.65245 -12.28536 -12.15680 -12.08967 -11.86642 -11.80208 -11.63629 -11.32230 -10.92238 -10.87412 -10.66285 -10.62843 -10.47151 -10.24108 -10.01410 -9.70903 -9.67558 -9.03973 -8.89781 -8.66737 -8.59906 -6.94308 -5.76887 -3.06517 -0.09558 0.33070 1.52562 2.28995 2.72813 2.94452 3.43380 3.48556 3.51203 3.71007 3.82790 4.09431 4.20052 4.32051 4.42560 4.51787 4.57861 4.59796 4.70371 4.81845 4.85256 4.93347 5.03877 5.23523 5.25517 5.38423 5.41384 5.48782 5.53786 5.55256 5.55826 5.58018 5.70865 5.82284 5.90639 5.92100 5.94017 5.95354 6.00966 6.05493 6.17195 6.19152 6.34151 6.34916 6.44540 6.65687 6.78047 7.41514 7.59873 7.69395 8.03258 8.41177 9.52609 10.09188 10.43392 11.45770 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002191 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.519128 B =12774.429359 C =13616.150300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.208 3.792 3 N -0.479 5.479 4 C 0.146 3.854 5 C -0.099 4.099 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.086 4.086 9 C -0.115 4.115 10 C -0.019 4.019 11 C -0.172 4.172 12 C 0.576 3.424 13 O -0.520 6.520 14 N -0.611 5.611 15 C 0.098 3.902 16 C -0.125 4.125 17 C -0.105 4.105 18 H 0.086 0.914 19 C 0.165 3.835 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.115 3.885 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.025 0.975 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.048 22.537 1.574 29.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.055 3.945 3 N -0.188 5.188 4 C 0.024 3.976 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.117 4.117 10 C -0.045 4.045 11 C -0.177 4.177 12 C 0.363 3.637 13 O -0.397 6.397 14 N -0.345 5.345 15 C -0.025 4.025 16 C -0.164 4.164 17 C -0.124 4.124 18 H 0.105 0.895 19 C 0.037 3.963 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.006 4.006 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.153 23.179 2.028 29.512 hybrid contribution 0.154 -1.609 0.036 1.617 sum 18.308 21.570 2.063 28.367 Atomic orbital electron populations 1.20888 0.87523 1.03903 1.04259 1.21493 0.97449 0.86238 0.89319 1.67863 1.08284 1.27944 1.14723 1.18994 0.89098 0.93042 0.96418 1.20825 0.94225 0.96399 1.00335 1.20971 0.93683 0.98863 0.97798 1.20928 1.00460 0.92259 1.00496 1.21042 0.92401 0.98745 0.98298 1.18763 0.94965 0.93530 1.04489 1.22021 0.92983 0.97790 0.91745 1.20817 0.94335 0.95086 1.07494 1.17597 0.83526 0.82179 0.80393 1.90846 1.27714 1.81029 1.40104 1.48493 1.37911 1.13152 1.34965 1.22200 0.90796 0.99275 0.90271 1.22659 0.98338 0.94497 1.00862 1.22629 0.96274 0.97742 0.95779 0.89538 1.20577 0.89278 0.88286 0.98119 1.42377 1.02324 1.04791 1.88270 1.19244 0.92618 0.83240 1.42166 0.91103 1.24761 0.95682 0.97712 1.02798 1.69664 0.98729 1.32884 1.56646 0.86121 0.77657 0.85214 0.77200 1.20566 1.21846 1.21872 1.22443 1.00317 0.80368 0.97520 0.89177 0.90257 0.89821 0.84554 0.85154 0.85322 0.84999 0.83505 0.91616 0.91430 0.89842 0.90183 0.95755 0.96010 0.78187 0.93490 0.90860 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.24 36.00 0.33 -0.96 16 2 C 0.21 2.69 6.81 -82.15 -0.56 2.13 16 3 N -0.48 -6.11 10.20 -6.93 -0.07 -6.18 16 4 C 0.15 1.64 6.61 -84.78 -0.56 1.08 16 5 C -0.10 -0.86 9.97 -39.48 -0.39 -1.26 16 6 C -0.09 -0.60 9.94 -39.93 -0.40 -1.00 16 7 C -0.12 -0.76 9.96 -39.92 -0.40 -1.16 16 8 C -0.09 -0.62 9.77 -39.47 -0.39 -1.01 16 9 C -0.12 -1.15 5.74 -106.81 -0.61 -1.76 16 10 C -0.02 -0.20 8.30 -38.43 -0.32 -0.52 16 11 C -0.17 -2.18 5.37 -104.83 -0.56 -2.74 16 12 C 0.58 8.57 6.54 -12.37 -0.08 8.49 16 13 O -0.52 -9.54 15.54 5.31 0.08 -9.46 16 14 N -0.61 -8.32 3.33 -171.52 -0.57 -8.89 16 15 C 0.10 0.99 5.95 -3.06 -0.02 0.97 16 16 C -0.13 -1.33 6.41 -24.89 -0.16 -1.48 16 17 C -0.10 -1.56 3.06 -88.35 -0.27 -1.83 16 18 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.17 3.10 5.72 -4.04 -0.02 3.08 16 20 N -0.73 -18.13 5.55 -59.91 -0.33 -18.46 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 C 0.11 1.81 6.37 -2.41 -0.02 1.80 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.10 6.33 -51.93 -0.33 0.77 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.15 1.17 6.31 -52.49 -0.33 0.84 16 38 H 0.07 0.52 5.83 -51.93 -0.30 0.22 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.41 7.97 -51.93 -0.41 0.00 16 44 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 47 H 0.09 1.61 7.99 -51.93 -0.41 1.20 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -33.94 385.06 -10.76 -44.71 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.71 Total: 6.14 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.67 Total: -3.49 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.25 Total: -61.07 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.94 -10.76 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567126744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.285 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds