Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 119.22853 * 2 1 4 4 C 1.33789 * 121.71687 * 179.97438 * 3 2 1 5 5 C 1.40538 * 120.83017 * 180.02562 * 4 3 2 6 6 C 1.36124 * 119.81737 * 179.97438 * 5 4 3 7 7 C 1.39342 * 121.09532 * 359.97438 * 6 5 4 8 8 C 1.36141 * 120.83607 * 0.02644 * 7 6 5 9 9 C 1.40546 * 119.62034 * 359.97438 * 8 7 6 10 10 C 1.40493 * 121.22566 * 180.30493 * 9 8 7 11 11 C 1.39040 * 117.96140 * 180.20500 * 10 9 8 12 12 C 1.47763 * 120.26482 * 179.74293 * 11 10 9 13 13 O 1.21567 * 119.99827 * 134.16033 * 12 11 10 14 14 N 1.34777 * 119.99940 * 314.15384 * 12 11 10 15 15 C 1.47023 * 125.64997 * 354.87908 * 14 12 11 16 16 C 1.54326 * 107.26951 * 181.02070 * 15 14 12 17 17 C 1.55158 * 103.10286 * 22.10592 * 16 15 14 18 18 H 1.08996 * 111.00864 * 82.66064 * 17 16 15 19 19 C 1.53000 * 111.00345 * 206.51447 * 17 16 15 20 20 N 1.46498 * 109.47209 * 184.99620 * 19 17 16 21 21 C 1.36938 * 119.99849 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00370 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99679 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00440 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00012 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46954 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47237 * 119.99623 * 25 23 21 28 28 H 1.48502 * 109.47204 * 240.00178 * 25 23 21 29 29 C 1.47426 * 125.64580 * 174.82995 * 14 12 11 30 30 H 1.09002 * 109.46884 * 273.89847 * 1 2 3 31 31 H 1.09005 * 109.47236 * 33.89285 * 1 2 3 32 32 H 1.08994 * 109.47238 * 153.89556 * 1 2 3 33 33 H 1.08008 * 120.08809 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.45340 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.58414 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.19063 * 180.02562 * 8 7 6 37 37 H 1.07997 * 121.01433 * 359.97380 * 10 9 8 38 38 H 1.08998 * 109.88398 * 61.60393 * 15 14 12 39 39 H 1.09000 * 109.88089 * 300.43405 * 15 14 12 40 40 H 1.09002 * 110.71769 * 140.55061 * 16 15 14 41 41 H 1.08998 * 110.72093 * 263.64872 * 16 15 14 42 42 H 1.08998 * 109.46611 * 304.99710 * 19 17 16 43 43 H 1.09000 * 109.47586 * 64.99308 * 19 17 16 44 44 H 0.96999 * 119.99905 * 0.02562 * 20 19 17 45 45 H 0.96996 * 120.00713 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.37308 * 274.75192 * 29 14 12 47 47 H 1.09002 * 110.36720 * 36.96557 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1496 2.4367 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2605 1.2975 0.0032 8 6 5.6511 0.0801 0.0027 9 6 4.2476 0.0059 0.0016 10 6 3.5837 -1.2323 0.0075 11 6 2.1933 -1.2266 0.0016 12 6 1.4434 -2.4998 0.0016 13 8 0.4997 -2.6493 0.7533 14 7 1.8054 -3.4951 -0.8318 15 6 2.8519 -3.4128 -1.8612 16 6 2.8950 -4.7774 -2.5808 17 6 1.4892 -5.3693 -2.2969 18 1 0.7521 -4.9795 -2.9989 19 6 1.5209 -6.8986 -2.3314 20 7 0.1599 -7.4189 -2.1786 21 6 -0.0606 -8.7704 -2.1798 22 1 0.7688 -9.4528 -2.2930 23 6 -1.3502 -9.2633 -2.0355 24 7 -2.3611 -8.4317 -1.8981 25 14 -1.6510 -11.1069 -2.0365 26 1 -0.3588 -11.8192 -2.2045 27 1 -2.2726 -11.5077 -0.7488 28 1 -2.5604 -11.4595 -3.1562 29 6 1.2183 -4.8471 -0.8615 30 1 -0.3633 0.0699 1.0253 31 1 -0.3634 0.8531 -0.5731 32 1 -0.3633 -0.9228 -0.4522 33 1 3.5841 3.3569 0.0015 34 1 6.0170 3.4255 0.0029 35 1 7.3390 1.3537 0.0036 36 1 6.2427 -0.8235 0.0040 37 1 4.1365 -2.1601 0.0125 38 1 3.8157 -3.2092 -1.3946 39 1 2.6091 -2.6252 -2.5745 40 1 3.0481 -4.6439 -3.6517 41 1 3.6735 -5.4122 -2.1575 42 1 1.9325 -7.2320 -3.2841 43 1 2.1445 -7.2676 -1.5172 44 1 -0.5850 -6.8060 -2.0773 45 1 -3.2623 -8.7761 -1.7977 46 1 1.7070 -5.4892 -0.1288 47 1 0.1466 -4.7996 -0.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567126744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = 13.130853 kcal Electronic energy + Delta-G solvation = -28441.027009 eV Core-core repulsion = 24587.828634 eV Total energy + Delta-G solvation = -3853.198375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22498 -40.93183 -39.05867 -38.00794 -36.48722 -34.86637 -33.81867 -33.00286 -32.14130 -31.15207 -30.00534 -28.91367 -27.31917 -25.93138 -24.68803 -23.65462 -23.40680 -23.11781 -21.51309 -21.01539 -19.42700 -19.00449 -18.52234 -17.85646 -17.23753 -17.04480 -16.55847 -16.43522 -16.02230 -15.66906 -15.40269 -15.33913 -15.12251 -15.09530 -14.69730 -14.39383 -14.11302 -14.07332 -13.92891 -13.89124 -13.48397 -13.18273 -13.10387 -13.00026 -12.78605 -12.70737 -12.43070 -12.36271 -12.21847 -12.11267 -11.90128 -11.69215 -11.61136 -11.54376 -11.29555 -10.95150 -10.59644 -9.86161 -9.68557 -9.26559 -8.99539 -7.94575 -5.23764 -0.80301 -0.42580 0.84653 1.39329 1.47232 1.48468 1.58400 1.72160 2.00782 2.56157 2.99363 3.04461 3.21595 3.38971 3.43532 3.55123 3.59112 3.64917 3.80769 3.86373 3.96473 4.19343 4.20459 4.25324 4.31420 4.35987 4.41951 4.48674 4.56656 4.59108 4.64057 4.68248 4.75524 4.81591 4.84719 4.86847 4.99957 5.02719 5.04752 5.12739 5.18270 5.24048 5.36716 5.41150 5.42314 5.48477 5.51375 5.86610 6.27284 6.34381 6.77371 6.91066 7.33291 8.10062 8.30963 9.29320 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002191 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.519128 B =12774.429359 C =13616.150300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.189 3.811 3 N -0.497 5.497 4 C 0.121 3.879 5 C -0.124 4.124 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.086 4.086 9 C -0.127 4.127 10 C -0.002 4.002 11 C -0.195 4.195 12 C 0.575 3.425 13 O -0.570 6.570 14 N -0.609 5.609 15 C 0.095 3.905 16 C -0.110 4.110 17 C -0.097 4.097 18 H 0.073 0.927 19 C 0.164 3.836 20 N -0.749 5.749 21 C -0.240 4.240 22 H 0.081 0.919 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.262 1.262 27 H -0.297 1.297 28 H -0.294 1.294 29 C 0.119 3.881 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.029 0.971 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.068 0.932 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.126 23.225 0.740 33.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 N -0.207 5.207 4 C 0.000 4.000 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.105 4.105 9 C -0.129 4.129 10 C -0.027 4.027 11 C -0.200 4.200 12 C 0.364 3.636 13 O -0.450 6.450 14 N -0.341 5.341 15 C -0.027 4.027 16 C -0.148 4.148 17 C -0.117 4.117 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.392 5.392 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.224 1.224 28 H -0.221 1.221 29 C -0.003 4.003 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.191 0.809 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.318 23.874 1.159 33.392 hybrid contribution -1.199 -1.666 0.299 2.074 sum 22.119 22.208 1.457 31.377 Atomic orbital electron populations 1.20776 0.88060 1.03278 1.03860 1.21483 0.97498 0.86798 0.90671 1.67825 1.09649 1.27767 1.15434 1.19463 0.88754 0.94771 0.97005 1.21011 0.95481 0.95703 1.02036 1.21421 0.92726 1.00740 0.94676 1.21411 1.02266 0.91482 0.98318 1.21412 0.91053 1.00661 0.97354 1.18992 0.96409 0.92718 1.04816 1.22278 0.91803 0.99117 0.89527 1.20556 0.95359 0.93384 1.10707 1.18003 0.82997 0.82924 0.79643 1.90808 1.30014 1.81984 1.42235 1.48519 1.38380 1.11888 1.35352 1.22476 0.91090 0.99394 0.89693 1.22675 0.95243 0.94279 1.02645 1.22441 0.99313 0.95263 0.94679 0.90873 1.20768 0.86272 0.90672 0.98508 1.42659 1.04429 1.03912 1.88181 1.19702 0.92796 0.84773 1.39958 0.90110 1.25624 0.95738 1.02123 1.03830 1.69837 0.98850 1.34775 1.58867 0.85057 0.77947 0.80186 0.76480 1.18576 1.22419 1.22146 1.22195 0.97983 0.81944 0.98210 0.89817 0.89137 0.91741 0.84319 0.82005 0.81805 0.82015 0.80927 0.88237 0.90496 0.87466 0.88368 0.94590 0.95330 0.79728 0.94150 0.91357 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 9.24 71.24 0.66 -2.07 16 2 C 0.19 5.15 6.81 43.27 0.29 5.44 16 3 N -0.50 -13.02 10.20 -175.85 -1.79 -14.82 16 4 C 0.12 2.61 6.61 40.29 0.27 2.88 16 5 C -0.12 -1.93 9.97 22.34 0.22 -1.71 16 6 C -0.08 -0.68 9.94 22.04 0.22 -0.46 16 7 C -0.12 -0.84 9.96 22.05 0.22 -0.62 16 8 C -0.09 -0.86 9.77 22.34 0.22 -0.64 16 9 C -0.13 -2.22 5.74 -21.28 -0.12 -2.35 16 10 C 0.00 -0.03 8.30 23.01 0.19 0.16 16 11 C -0.19 -5.00 5.37 -20.00 -0.11 -5.11 16 12 C 0.58 17.94 6.54 86.76 0.57 18.51 16 13 O -0.57 -22.78 15.54 -3.93 -0.06 -22.84 16 14 N -0.61 -16.66 3.33 -814.83 -2.71 -19.37 16 15 C 0.09 1.67 5.95 86.73 0.52 2.19 16 16 C -0.11 -1.98 6.41 31.78 0.20 -1.78 16 17 C -0.10 -2.86 3.06 -9.32 -0.03 -2.89 16 18 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 19 C 0.16 6.05 5.72 86.38 0.49 6.54 16 20 N -0.75 -37.80 5.55 -343.46 -1.91 -39.71 16 21 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 24 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 25 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 C 0.12 3.93 6.37 86.93 0.55 4.48 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 1.92 6.33 -2.39 -0.02 1.91 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 36 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.17 2.10 6.31 -2.91 -0.02 2.08 16 38 H 0.10 1.13 5.83 -2.39 -0.01 1.12 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 44 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.07 2.28 7.91 -2.39 -0.02 2.27 16 47 H 0.04 1.85 7.99 -2.39 -0.02 1.83 16 Total: -1.00 -79.09 385.06 1.79 -77.29 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.28 Total: 25.83 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.67 Total: 5.77 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -6.13 Total: -134.70 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -79.09 1.79 -77.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567126744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.426 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds