Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30822 * 119.22638 * 2 1 4 4 C 1.33797 * 121.71548 * 180.24604 * 3 2 1 5 5 C 1.40531 * 120.82327 * 179.74334 * 4 3 2 6 6 C 1.36136 * 119.81541 * 180.02562 * 5 4 3 7 7 C 1.39352 * 121.08850 * 359.97438 * 6 5 4 8 8 C 1.36133 * 120.83913 * 0.02621 * 7 6 5 9 9 C 1.40547 * 119.62095 * 359.95293 * 8 7 6 10 10 C 1.40487 * 121.22832 * 180.02562 * 9 8 7 11 11 C 1.39046 * 117.96829 * 180.02562 * 10 9 8 12 12 C 1.47753 * 120.27043 * 179.97438 * 11 10 9 13 13 O 1.21571 * 119.99662 * 134.47991 * 12 11 10 14 14 N 1.34769 * 120.00495 * 314.47933 * 12 11 10 15 15 C 1.47022 * 125.64532 * 354.73220 * 14 12 11 16 16 C 1.54328 * 107.27123 * 178.97550 * 15 14 12 17 17 C 1.55156 * 102.94404 * 337.80524 * 16 15 14 18 18 H 1.08996 * 111.03605 * 277.41966 * 17 16 15 19 19 C 1.52996 * 111.00531 * 153.57302 * 17 16 15 20 20 N 1.46503 * 109.47033 * 181.34788 * 19 17 16 21 21 C 1.36937 * 119.99998 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00311 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00546 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99702 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47354 * 269.99948 * 25 23 21 27 27 H 1.48492 * 109.47296 * 30.00014 * 25 23 21 28 28 H 1.48498 * 109.47096 * 150.00137 * 25 23 21 29 29 C 1.47431 * 125.65332 * 174.77201 * 14 12 11 30 30 H 1.09008 * 109.46651 * 264.74125 * 1 2 3 31 31 H 1.08995 * 109.47525 * 24.74062 * 1 2 3 32 32 H 1.08999 * 109.47456 * 144.74741 * 1 2 3 33 33 H 1.08001 * 120.09462 * 0.04398 * 5 4 3 34 34 H 1.07994 * 119.45617 * 180.02562 * 6 5 4 35 35 H 1.07997 * 119.57330 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.18598 * 180.02562 * 8 7 6 37 37 H 1.08002 * 121.01648 * 0.04834 * 10 9 8 38 38 H 1.09003 * 109.88644 * 298.38997 * 15 14 12 39 39 H 1.09002 * 109.88372 * 59.40298 * 15 14 12 40 40 H 1.09000 * 110.72050 * 219.44280 * 16 15 14 41 41 H 1.09001 * 110.72145 * 96.16934 * 16 15 14 42 42 H 1.09006 * 109.46812 * 61.35729 * 19 17 16 43 43 H 1.08999 * 109.47604 * 301.35271 * 19 17 16 44 44 H 0.96997 * 119.99805 * 0.02562 * 20 19 17 45 45 H 0.96993 * 120.00494 * 180.02562 * 24 23 21 46 46 H 1.09002 * 110.36686 * 85.25386 * 29 14 12 47 47 H 1.08994 * 110.45519 * 322.98218 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1998 -0.0049 5 6 4.1494 2.4367 -0.0102 6 6 5.5103 2.4719 -0.0156 7 6 6.2605 1.2976 -0.0155 8 6 5.6512 0.0802 -0.0105 9 6 4.2477 0.0059 -0.0043 10 6 3.5838 -1.2322 0.0015 11 6 2.1934 -1.2266 0.0069 12 6 1.4435 -2.4997 0.0126 13 8 0.5023 -2.6473 0.7678 14 7 1.8028 -3.4972 -0.8193 15 6 2.8439 -3.4167 -1.8543 16 6 2.9215 -4.7997 -2.5347 17 6 2.3144 -5.7471 -1.4665 18 1 3.0601 -6.0265 -0.7222 19 6 1.7028 -6.9886 -2.1188 20 7 1.1123 -7.8425 -1.0851 21 6 0.5020 -9.0177 -1.4341 22 1 0.4564 -9.3152 -2.4713 23 6 -0.0580 -9.8265 -0.4549 24 7 -0.6441 -10.9562 -0.7902 25 14 0.0203 -9.3115 1.3391 26 1 1.2600 -9.8492 1.9548 27 1 0.0257 -7.8293 1.4288 28 1 -1.1626 -9.8468 2.0597 29 6 1.2165 -4.8497 -0.8429 30 1 -0.3633 -0.0942 1.0234 31 1 -0.3634 0.9333 -0.4301 32 1 -0.3634 -0.8392 -0.5931 33 1 3.5840 3.3569 -0.0097 34 1 6.0169 3.4257 -0.0193 35 1 7.3390 1.3540 -0.0195 36 1 6.2429 -0.8232 -0.0100 37 1 4.1366 -2.1600 0.0022 38 1 2.5784 -2.6565 -2.5889 39 1 3.8027 -3.1715 -1.3973 40 1 3.9567 -5.0685 -2.7450 41 1 2.3252 -4.8146 -3.4470 42 1 2.4797 -7.5417 -2.6467 43 1 0.9297 -6.6849 -2.8245 44 1 1.1529 -7.5751 -0.1536 45 1 -1.0358 -11.5212 -0.1060 46 1 0.3189 -4.8633 -1.4611 47 1 0.9844 -5.1819 0.1689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567126745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = 16.111686 kcal Electronic energy + Delta-G solvation = -28601.539034 eV Core-core repulsion = 24748.469918 eV Total energy + Delta-G solvation = -3853.069116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23544 -40.95657 -39.10630 -38.02762 -36.63385 -34.87407 -33.91988 -33.01889 -32.45835 -31.18804 -30.15994 -28.93465 -27.47252 -25.87178 -24.54519 -23.66885 -23.28992 -23.14273 -21.62289 -21.01832 -19.73972 -19.26237 -18.35538 -17.86207 -17.49441 -17.07100 -16.58808 -16.40639 -15.98208 -15.66512 -15.55190 -15.40053 -15.29588 -14.89724 -14.64798 -14.41806 -14.17720 -14.08367 -14.04829 -13.83341 -13.72332 -13.49129 -13.23025 -13.01372 -12.81466 -12.71471 -12.43942 -12.37362 -12.21789 -12.03830 -11.94123 -11.79845 -11.65453 -11.57038 -11.31494 -10.99638 -10.60719 -9.87547 -9.70259 -9.30131 -9.27769 -8.04124 -5.36712 -0.81475 -0.43648 0.83411 1.35810 1.37763 1.38575 1.44861 1.71150 1.98928 2.45890 2.98330 3.03542 3.18443 3.27838 3.40857 3.51820 3.54970 3.58463 3.75849 3.82462 3.93446 4.04081 4.17973 4.24341 4.30682 4.34466 4.37492 4.46981 4.50790 4.57962 4.61553 4.66991 4.72896 4.78758 4.82900 4.85847 4.99673 5.01816 5.03907 5.11211 5.13152 5.22462 5.35661 5.39607 5.41147 5.47486 5.75663 5.85331 6.20156 6.32104 6.76628 6.89027 7.07088 7.84010 8.00438 9.17337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.002436 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.771727 B =11491.022459 C =12051.034334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.189 3.811 3 N -0.497 5.497 4 C 0.121 3.879 5 C -0.123 4.123 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.087 4.087 9 C -0.128 4.128 10 C -0.002 4.002 11 C -0.195 4.195 12 C 0.576 3.424 13 O -0.569 6.569 14 N -0.609 5.609 15 C 0.094 3.906 16 C -0.111 4.111 17 C -0.099 4.099 18 H 0.093 0.907 19 C 0.165 3.835 20 N -0.761 5.761 21 C -0.230 4.230 22 H 0.062 0.938 23 C -0.063 4.063 24 N -0.982 5.982 25 Si 0.949 3.051 26 H -0.274 1.274 27 H -0.260 1.260 28 H -0.298 1.298 29 C 0.114 3.886 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.028 0.972 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.062 0.938 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.582 31.012 -1.629 36.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.036 3.964 3 N -0.207 5.207 4 C 0.000 4.000 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.028 4.028 11 C -0.200 4.200 12 C 0.365 3.635 13 O -0.449 6.449 14 N -0.341 5.341 15 C -0.027 4.027 16 C -0.149 4.149 17 C -0.119 4.119 18 H 0.111 0.889 19 C 0.039 3.961 20 N -0.407 5.407 21 C -0.361 4.361 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.633 5.633 25 Si 0.777 3.223 26 H -0.200 1.200 27 H -0.185 1.185 28 H -0.225 1.225 29 C -0.009 4.009 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.618 31.703 -1.358 36.791 hybrid contribution -0.604 -1.232 1.248 1.855 sum 18.014 30.471 -0.110 35.397 Atomic orbital electron populations 1.20755 0.87875 1.03485 1.03631 1.21514 0.97583 0.86727 0.90623 1.67844 1.09581 1.27830 1.15405 1.19451 0.88801 0.94713 0.97015 1.21014 0.95449 0.95748 1.01979 1.21425 0.92774 1.00700 0.94697 1.21408 1.02254 0.91520 0.98324 1.21407 0.91141 1.00616 0.97398 1.18986 0.96357 0.92782 1.04826 1.22284 0.91943 0.99036 0.89554 1.20555 0.95267 0.93494 1.10700 1.17972 0.83026 0.82979 0.79516 1.90804 1.30161 1.81953 1.42022 1.48513 1.38762 1.11727 1.35143 1.22492 0.91198 0.99369 0.89689 1.22675 1.04000 0.90964 0.97259 1.22491 0.96650 0.93741 0.98969 0.88876 1.20768 0.95390 0.89265 0.90674 1.42792 1.69547 1.22774 1.05579 1.19051 1.27166 0.95951 0.93911 0.92005 1.25442 1.00959 0.96983 1.02030 1.69863 1.44825 1.14754 1.33856 0.85502 0.77224 0.78494 0.81120 1.20042 1.18481 1.22476 1.22219 0.96988 0.80848 1.00831 0.90027 0.89160 0.91406 0.84270 0.82030 0.81894 0.82133 0.81043 0.90113 0.88626 0.86477 0.89550 0.93943 0.95422 0.80360 0.93376 0.92018 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 8.90 71.24 0.63 -1.78 16 2 C 0.19 4.80 6.81 43.28 0.29 5.09 16 3 N -0.50 -12.32 10.20 -175.85 -1.79 -14.11 16 4 C 0.12 2.49 6.61 40.28 0.27 2.76 16 5 C -0.12 -1.83 9.97 22.34 0.22 -1.60 16 6 C -0.08 -0.64 9.94 22.05 0.22 -0.42 16 7 C -0.12 -0.80 9.96 22.05 0.22 -0.58 16 8 C -0.09 -0.83 9.77 22.34 0.22 -0.61 16 9 C -0.13 -2.12 5.74 -21.29 -0.12 -2.25 16 10 C 0.00 -0.04 8.27 23.01 0.19 0.15 16 11 C -0.19 -4.66 5.38 -20.00 -0.11 -4.77 16 12 C 0.58 16.60 6.56 86.76 0.57 17.16 16 13 O -0.57 -21.17 15.83 -3.94 -0.06 -21.24 16 14 N -0.61 -15.08 3.33 -815.27 -2.71 -17.80 16 15 C 0.09 1.45 6.02 86.73 0.52 1.97 16 16 C -0.11 -1.73 6.42 31.78 0.20 -1.53 16 17 C -0.10 -2.48 3.11 -9.40 -0.03 -2.51 16 18 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 19 C 0.17 5.65 5.71 86.38 0.49 6.14 16 20 N -0.76 -34.79 5.26 -343.45 -1.81 -36.60 16 21 C -0.23 -13.04 10.47 84.03 0.88 -12.16 16 22 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 23 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 25 Si 0.95 46.73 27.74 68.60 1.90 48.63 16 26 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 28 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 29 C 0.11 3.37 6.06 86.86 0.53 3.90 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.74 6.95 -2.39 -0.02 1.73 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.16 0.07 8.06 -2.91 -0.02 0.04 16 36 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.17 1.96 6.28 -2.91 -0.02 1.94 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 0.97 5.67 -2.39 -0.01 0.96 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 44 H 0.36 16.25 5.39 -92.71 -0.50 15.75 16 45 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 47 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 Total: -1.00 -80.45 382.22 1.93 -78.52 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.43 Total: 20.04 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.67 Total: 5.70 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -6.01 Total: -131.65 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.24 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.90 Total: 48.63 kcal Total: -80.45 1.93 -78.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567126745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.632 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds