Wall clock time and date at job start Tue Mar 31 2020 22:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39314 * 119.11666 * 2 1 4 4 C 1.36582 * 119.90524 * 180.02562 * 3 2 1 5 5 C 1.40891 * 118.15758 * 0.03428 * 4 3 2 6 6 C 1.40176 * 121.22014 * 179.91105 * 5 4 3 7 7 C 1.38542 * 119.40566 * 180.32656 * 6 5 4 8 8 C 1.47769 * 119.81046 * 179.70095 * 7 6 5 9 9 O 1.21563 * 120.00110 * 172.73033 * 8 7 6 10 10 N 1.34778 * 119.99634 * 352.73616 * 8 7 6 11 11 C 1.47017 * 125.64839 * 5.80488 * 10 8 7 12 12 C 1.54330 * 107.27157 * 178.90630 * 11 10 8 13 13 C 1.55160 * 102.93920 * 337.80515 * 12 11 10 14 14 H 1.09003 * 111.00296 * 277.38996 * 13 12 11 15 15 C 1.52998 * 111.00282 * 153.57527 * 13 12 11 16 16 N 1.46505 * 109.47001 * 174.99744 * 15 13 12 17 17 C 1.36934 * 119.99983 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47067 * 90.00521 * 21 19 17 23 23 H 1.48500 * 109.46950 * 210.00159 * 21 19 17 24 24 H 1.48499 * 109.47210 * 330.00147 * 21 19 17 25 25 C 1.47416 * 125.64652 * 185.49747 * 10 8 7 26 26 C 1.40647 * 120.38671 * 359.36115 * 7 6 5 27 27 C 1.35698 * 120.91897 * 0.69882 * 26 7 6 28 28 C 1.40767 * 120.11128 * 359.63223 * 27 26 7 29 29 N 1.31126 * 119.11470 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47482 * 269.97859 * 1 2 3 31 31 H 1.08997 * 109.46978 * 29.98088 * 1 2 3 32 32 H 1.09005 * 109.47374 * 149.98272 * 1 2 3 33 33 H 1.08005 * 120.04722 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.91823 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.29883 * 0.05648 * 6 5 4 36 36 H 1.09006 * 109.88504 * 298.31895 * 11 10 8 37 37 H 1.09000 * 109.88426 * 59.48610 * 11 10 8 38 38 H 1.08996 * 110.72089 * 96.16815 * 12 11 10 39 39 H 1.08993 * 110.72142 * 219.26640 * 12 11 10 40 40 H 1.08996 * 109.47408 * 295.00080 * 15 13 12 41 41 H 1.09000 * 109.46669 * 55.00336 * 15 13 12 42 42 H 0.97003 * 119.99746 * 0.02562 * 16 15 13 43 43 H 0.97006 * 119.99723 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36838 * 323.00289 * 25 10 8 45 45 H 1.09003 * 110.36800 * 85.32377 * 25 10 8 46 46 H 1.07997 * 119.53583 * 180.35051 * 26 7 6 47 47 H 1.08000 * 119.94166 * 179.60793 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 -0.0005 5 6 4.2324 0.0030 -0.0018 6 6 5.6331 -0.0526 -0.0043 7 6 6.2649 -1.2856 -0.0123 8 6 7.7409 -1.3546 -0.0217 9 8 8.3001 -2.4266 0.1045 10 7 8.4672 -0.2290 -0.1700 11 6 7.9293 1.1386 -0.2111 12 6 9.1281 2.0981 -0.3659 13 6 10.3181 1.2558 0.1650 14 1 10.3726 1.2987 1.2528 15 6 11.6360 1.7100 -0.4656 16 7 12.7477 0.9768 0.1449 17 6 14.0326 1.2178 -0.2625 18 1 14.2266 1.9487 -1.0336 19 6 15.0860 0.5227 0.3155 20 7 14.8496 -0.3684 1.2549 21 14 16.8387 0.8510 -0.2408 22 1 17.4260 1.9349 0.5870 23 1 17.6473 -0.3847 -0.0843 24 1 16.8362 1.2636 -1.6673 25 6 9.9332 -0.1648 -0.3113 26 6 5.5097 -2.4721 -0.0045 27 6 4.1532 -2.4351 -0.0031 28 6 3.4804 -1.1987 -0.0018 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6313 2.1445 0.0004 34 1 4.0927 2.1700 -0.0010 35 1 6.2145 0.8575 -0.0043 36 1 7.2558 1.2467 -1.0614 37 1 7.3977 1.3559 0.7153 38 1 9.2787 2.3614 -1.4128 39 1 8.9859 2.9936 0.2389 40 1 11.6139 1.5106 -1.5369 41 1 11.7697 2.7787 -0.2975 42 1 12.5736 0.3206 0.8378 43 1 15.5858 -0.8539 1.6591 44 1 10.4083 -0.9179 0.3174 45 1 10.2202 -0.3036 -1.3537 46 1 6.0164 -3.4257 -0.0052 47 1 3.5889 -3.3560 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567145634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:55 Heat of formation + Delta-G solvation = 54.124780 kcal Electronic energy + Delta-G solvation = -28052.609110 eV Core-core repulsion = 24201.188365 eV Total energy + Delta-G solvation = -3851.420745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37847 -40.16415 -37.94776 -37.06426 -34.84833 -33.92531 -32.69418 -32.11453 -30.66184 -30.45560 -28.84449 -28.36064 -25.64759 -24.38909 -24.09309 -22.90873 -22.63925 -21.80424 -20.34288 -19.95161 -18.55094 -17.66057 -17.02004 -16.94402 -16.30581 -16.01185 -15.38893 -15.13246 -14.82406 -14.80411 -14.46677 -14.23676 -13.86021 -13.66231 -13.53156 -13.37713 -13.32174 -13.18180 -12.92147 -12.64967 -12.62690 -12.57671 -12.11424 -11.83963 -11.58121 -11.51770 -11.17615 -10.96544 -10.88235 -10.66088 -10.62854 -10.47945 -10.07183 -9.98325 -9.77569 -9.68610 -9.06520 -8.89035 -8.67041 -8.58762 -6.94150 -5.76425 -3.06145 -0.12296 0.35556 1.55238 2.16615 2.87491 3.11509 3.43836 3.48709 3.50955 3.75647 3.76627 4.09594 4.23351 4.26777 4.36404 4.47342 4.56365 4.64995 4.72677 4.78475 4.87801 4.94915 4.97624 5.07532 5.13673 5.15615 5.26521 5.38377 5.47375 5.50810 5.52943 5.57760 5.62551 5.70265 5.80024 5.88007 5.89928 5.90629 6.00216 6.07500 6.13950 6.19668 6.34669 6.35696 6.46411 6.65391 6.77831 7.44955 7.54820 7.69116 8.09881 8.41591 9.52933 10.09484 10.43659 11.46145 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.001990 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.836090 B =14067.606552 C =14880.649895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.178 4.178 4 C -0.045 4.045 5 C -0.118 4.118 6 C -0.093 4.093 7 C -0.121 4.121 8 C 0.568 3.432 9 O -0.530 6.530 10 N -0.611 5.611 11 C 0.088 3.912 12 C -0.128 4.128 13 C -0.105 4.105 14 H 0.086 0.914 15 C 0.165 3.835 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.115 3.885 26 C -0.050 4.050 27 C -0.104 4.104 28 C 0.148 3.852 29 N -0.481 5.481 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.171 0.829 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.144 0.856 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.715 5.548 -3.065 31.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.198 4.198 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.357 3.643 9 O -0.407 6.407 10 N -0.344 5.344 11 C -0.035 4.035 12 C -0.166 4.166 13 C -0.125 4.125 14 H 0.105 0.895 15 C 0.037 3.963 16 N -0.377 5.377 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.007 4.007 26 C -0.070 4.070 27 C -0.123 4.123 28 C 0.027 3.973 29 N -0.190 5.190 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.188 0.812 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.161 0.839 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -30.677 4.092 -3.091 31.103 hybrid contribution 1.388 0.753 0.001 1.579 sum -29.289 4.845 -3.090 29.848 Atomic orbital electron populations 1.20810 0.88519 1.03797 1.03434 1.21575 0.97257 0.88236 0.91780 1.21721 0.95030 0.99323 1.03751 1.21547 0.94535 0.97218 0.93776 1.18807 0.94480 0.94237 1.04483 1.23056 0.93499 0.99753 0.94825 1.19972 0.93200 0.94176 1.05086 1.17865 0.86218 0.83044 0.77183 1.90818 1.72360 1.27901 1.49611 1.48432 1.08934 1.05434 1.71642 1.22550 0.97443 0.82521 1.00945 1.22735 0.93415 0.97633 1.02844 1.22562 0.95279 0.93266 1.01387 0.89532 1.20581 0.85249 0.95181 0.95269 1.42369 1.01659 1.47495 1.46225 1.19202 0.83469 1.18089 1.16643 0.91149 1.24758 0.98024 0.99062 0.99047 1.69661 1.30852 1.28297 1.29117 0.86186 0.84905 0.77049 0.78006 1.21732 1.21753 1.20764 1.22372 0.77629 0.98529 1.02138 1.20944 0.93131 0.98424 0.94495 1.20691 0.93627 0.96586 1.01390 1.19008 0.89066 0.93047 0.96215 1.67902 1.08404 1.28792 1.13923 0.89977 0.90372 0.90192 0.84319 0.83963 0.81219 0.90549 0.90526 0.90020 0.89678 0.95990 0.95747 0.78184 0.93445 0.89475 0.90797 0.83858 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.14 36.00 0.37 -0.16 16 2 C 0.16 1.35 6.78 -82.49 -0.56 0.79 16 3 C -0.18 -1.17 9.64 -39.78 -0.38 -1.56 16 4 C -0.05 -0.32 9.89 -39.18 -0.39 -0.71 16 5 C -0.12 -1.17 5.74 -106.82 -0.61 -1.78 16 6 C -0.09 -0.92 8.37 -38.74 -0.32 -1.24 16 7 C -0.12 -1.51 5.87 -104.98 -0.62 -2.12 16 8 C 0.57 8.72 7.80 -12.36 -0.10 8.62 16 9 O -0.53 -10.19 16.56 5.31 0.09 -10.10 16 10 N -0.61 -8.43 3.33 -178.04 -0.59 -9.03 16 11 C 0.09 0.83 4.86 -3.06 -0.01 0.82 16 12 C -0.13 -1.29 6.42 -24.89 -0.16 -1.45 16 13 C -0.11 -1.56 3.03 -88.59 -0.27 -1.83 16 14 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.17 3.10 5.72 -4.04 -0.02 3.07 16 16 N -0.73 -18.18 5.55 -59.91 -0.33 -18.51 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.11 1.84 6.35 -2.65 -0.02 1.83 16 26 C -0.05 -0.58 9.49 -39.58 -0.38 -0.96 16 27 C -0.10 -1.13 9.95 -39.54 -0.39 -1.52 16 28 C 0.15 1.68 6.61 -84.78 -0.56 1.12 16 29 N -0.48 -5.24 10.23 -7.16 -0.07 -5.32 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.17 1.30 2.69 -60.53 -0.16 1.13 16 36 H 0.08 0.58 6.75 -51.93 -0.35 0.23 16 37 H 0.08 0.60 6.73 -51.93 -0.35 0.25 16 38 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 1.66 7.99 -51.93 -0.41 1.24 16 45 H 0.07 1.23 7.90 -51.93 -0.41 0.82 16 46 H 0.14 1.66 7.63 -52.49 -0.40 1.26 16 47 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -35.30 384.19 -10.67 -45.97 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.58 Total: 5.87 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.67 Total: -4.45 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.27 Total: -60.49 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.30 -10.67 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567145634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.097 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds