Wall clock time and date at job start Tue Mar 31 2020 22:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39314 * 119.11666 * 2 1 4 4 C 1.36582 * 119.90524 * 180.02562 * 3 2 1 5 5 C 1.40891 * 118.15758 * 0.03428 * 4 3 2 6 6 C 1.40176 * 121.22014 * 179.91105 * 5 4 3 7 7 C 1.38542 * 119.40566 * 180.32656 * 6 5 4 8 8 C 1.47769 * 119.81046 * 179.70095 * 7 6 5 9 9 O 1.21563 * 120.00110 * 172.73033 * 8 7 6 10 10 N 1.34778 * 119.99634 * 352.73616 * 8 7 6 11 11 C 1.47017 * 125.64839 * 5.80488 * 10 8 7 12 12 C 1.54330 * 107.27157 * 178.90630 * 11 10 8 13 13 C 1.55160 * 102.93920 * 337.80515 * 12 11 10 14 14 H 1.09003 * 111.00296 * 277.38996 * 13 12 11 15 15 C 1.52998 * 111.00282 * 153.57527 * 13 12 11 16 16 N 1.46505 * 109.47001 * 174.99744 * 15 13 12 17 17 C 1.36934 * 119.99983 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47067 * 90.00521 * 21 19 17 23 23 H 1.48500 * 109.46950 * 210.00159 * 21 19 17 24 24 H 1.48499 * 109.47210 * 330.00147 * 21 19 17 25 25 C 1.47416 * 125.64652 * 185.49747 * 10 8 7 26 26 C 1.40647 * 120.38671 * 359.36115 * 7 6 5 27 27 C 1.35698 * 120.91897 * 0.69882 * 26 7 6 28 28 C 1.40767 * 120.11128 * 359.63223 * 27 26 7 29 29 N 1.31126 * 119.11470 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47482 * 269.97859 * 1 2 3 31 31 H 1.08997 * 109.46978 * 29.98088 * 1 2 3 32 32 H 1.09005 * 109.47374 * 149.98272 * 1 2 3 33 33 H 1.08005 * 120.04722 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.91823 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.29883 * 0.05648 * 6 5 4 36 36 H 1.09006 * 109.88504 * 298.31895 * 11 10 8 37 37 H 1.09000 * 109.88426 * 59.48610 * 11 10 8 38 38 H 1.08996 * 110.72089 * 96.16815 * 12 11 10 39 39 H 1.08993 * 110.72142 * 219.26640 * 12 11 10 40 40 H 1.08996 * 109.47408 * 295.00080 * 15 13 12 41 41 H 1.09000 * 109.46669 * 55.00336 * 15 13 12 42 42 H 0.97003 * 119.99746 * 0.02562 * 16 15 13 43 43 H 0.97006 * 119.99723 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36838 * 323.00289 * 25 10 8 45 45 H 1.09003 * 110.36800 * 85.32377 * 25 10 8 46 46 H 1.07997 * 119.53583 * 180.35051 * 26 7 6 47 47 H 1.08000 * 119.94166 * 179.60793 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 -0.0005 5 6 4.2324 0.0030 -0.0018 6 6 5.6331 -0.0526 -0.0043 7 6 6.2649 -1.2856 -0.0123 8 6 7.7409 -1.3546 -0.0217 9 8 8.3001 -2.4266 0.1045 10 7 8.4672 -0.2290 -0.1700 11 6 7.9293 1.1386 -0.2111 12 6 9.1281 2.0981 -0.3659 13 6 10.3181 1.2558 0.1650 14 1 10.3726 1.2987 1.2528 15 6 11.6360 1.7100 -0.4656 16 7 12.7477 0.9768 0.1449 17 6 14.0326 1.2178 -0.2625 18 1 14.2266 1.9487 -1.0336 19 6 15.0860 0.5227 0.3155 20 7 14.8496 -0.3684 1.2549 21 14 16.8387 0.8510 -0.2408 22 1 17.4260 1.9349 0.5870 23 1 17.6473 -0.3847 -0.0843 24 1 16.8362 1.2636 -1.6673 25 6 9.9332 -0.1648 -0.3113 26 6 5.5097 -2.4721 -0.0045 27 6 4.1532 -2.4351 -0.0031 28 6 3.4804 -1.1987 -0.0018 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6313 2.1445 0.0004 34 1 4.0927 2.1700 -0.0010 35 1 6.2145 0.8575 -0.0043 36 1 7.2558 1.2467 -1.0614 37 1 7.3977 1.3559 0.7153 38 1 9.2787 2.3614 -1.4128 39 1 8.9859 2.9936 0.2389 40 1 11.6139 1.5106 -1.5369 41 1 11.7697 2.7787 -0.2975 42 1 12.5736 0.3206 0.8378 43 1 15.5858 -0.8539 1.6591 44 1 10.4083 -0.9179 0.3174 45 1 10.2202 -0.3036 -1.3537 46 1 6.0164 -3.4257 -0.0052 47 1 3.5889 -3.3560 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567145634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:54 Heat of formation + Delta-G solvation = 30.887275 kcal Electronic energy + Delta-G solvation = -28053.616764 eV Core-core repulsion = 24201.188365 eV Total energy + Delta-G solvation = -3852.428399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16036 -41.13921 -39.04959 -37.96454 -36.52901 -34.70643 -34.01732 -33.02575 -32.10018 -31.35375 -29.96648 -29.11807 -27.13946 -25.65141 -24.78274 -24.19051 -23.50351 -22.82951 -21.48267 -21.04136 -19.39903 -19.09115 -18.42716 -17.82728 -17.31642 -16.84472 -16.59756 -16.37122 -15.93688 -15.67830 -15.54347 -15.31359 -15.04046 -14.83152 -14.71380 -14.52024 -14.13690 -14.04173 -13.86722 -13.78667 -13.55144 -13.32963 -13.09170 -13.01023 -12.76706 -12.72716 -12.44242 -12.28960 -12.14103 -12.08147 -11.82574 -11.65214 -11.56122 -11.51373 -11.17707 -10.93153 -10.44447 -9.90064 -9.66177 -9.35815 -8.99540 -7.94684 -5.23849 -0.83657 -0.36065 0.85202 1.32357 1.47008 1.49254 1.57582 1.78699 2.17947 2.56245 3.02426 3.11703 3.27864 3.39274 3.44190 3.55369 3.66637 3.72365 3.87117 3.88835 3.99263 4.02430 4.19732 4.20496 4.28314 4.35962 4.41874 4.53252 4.63447 4.64673 4.77981 4.79976 4.81492 4.82488 4.84539 4.91502 4.98842 5.03451 5.05234 5.13819 5.19508 5.23049 5.24432 5.28356 5.42267 5.50232 5.51110 5.76579 6.27034 6.37276 6.91512 6.95583 7.33085 8.10251 8.30895 9.29018 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.001990 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.836090 B =14067.606552 C =14880.649895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.159 3.841 3 C -0.174 4.174 4 C -0.039 4.039 5 C -0.134 4.134 6 C -0.066 4.066 7 C -0.148 4.148 8 C 0.562 3.438 9 O -0.588 6.588 10 N -0.610 5.610 11 C 0.079 3.921 12 C -0.112 4.112 13 C -0.097 4.097 14 H 0.076 0.924 15 C 0.163 3.837 16 N -0.749 5.749 17 C -0.243 4.243 18 H 0.081 0.919 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.267 1.267 25 C 0.117 3.883 26 C -0.062 4.062 27 C -0.111 4.111 28 C 0.131 3.869 29 N -0.518 5.518 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.199 0.801 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.026 0.974 41 H 0.039 0.961 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.129 0.871 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.536 10.169 -4.032 35.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.194 4.194 4 C -0.064 4.064 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.151 4.151 8 C 0.353 3.647 9 O -0.470 6.470 10 N -0.341 5.341 11 C -0.041 4.041 12 C -0.150 4.150 13 C -0.117 4.117 14 H 0.095 0.905 15 C 0.037 3.963 16 N -0.392 5.392 17 C -0.375 4.375 18 H 0.099 0.901 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.192 1.192 25 C -0.005 4.005 26 C -0.083 4.083 27 C -0.130 4.130 28 C 0.009 3.991 29 N -0.229 5.229 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.201 0.799 35 H 0.215 0.785 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.147 0.853 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -33.550 8.796 -4.096 34.925 hybrid contribution 2.031 -0.588 0.268 2.132 sum -31.518 8.208 -3.829 32.794 Atomic orbital electron populations 1.20938 0.86430 1.04801 1.04354 1.22297 0.98856 0.88378 0.89715 1.22179 0.95171 1.00047 1.01963 1.22027 0.94996 0.97362 0.92041 1.19046 0.94393 0.95122 1.05080 1.23286 0.93739 0.99331 0.92036 1.19739 0.91098 0.95626 1.08669 1.18415 0.87527 0.82569 0.76175 1.90774 1.73622 1.30118 1.52500 1.48472 1.07785 1.07120 1.70751 1.22969 0.97914 0.79477 1.03782 1.22763 0.90400 0.97832 1.04016 1.22382 0.95453 0.93286 1.00583 0.90520 1.20788 0.85257 0.95102 0.95197 1.42656 1.02537 1.47816 1.46185 1.19677 0.84816 1.17143 1.15834 0.90125 1.25623 1.02229 0.99573 0.99812 1.69840 1.31553 1.29966 1.30985 0.85115 0.79858 0.76411 0.78234 1.21184 1.22659 1.19191 1.22125 0.79420 0.98463 1.00532 1.20860 0.93588 0.98119 0.95733 1.20742 0.93176 0.97405 1.01636 1.19216 0.89782 0.93611 0.96470 1.67927 1.08289 1.30646 1.16001 0.88920 0.87524 0.91067 0.80378 0.79888 0.78477 0.87276 0.87741 0.88665 0.86418 0.95646 0.94310 0.79765 0.94168 0.93956 0.91795 0.85270 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.14 71.24 0.72 0.00 16 2 C 0.16 2.15 6.78 42.92 0.29 2.44 16 3 C -0.17 -1.43 9.64 22.14 0.21 -1.22 16 4 C -0.04 -0.36 9.89 22.53 0.22 -0.14 16 5 C -0.13 -2.29 5.74 -21.29 -0.12 -2.41 16 6 C -0.07 -1.14 8.37 22.81 0.19 -0.95 16 7 C -0.15 -3.75 5.87 -20.10 -0.12 -3.87 16 8 C 0.56 18.14 7.80 86.76 0.68 18.82 16 9 O -0.59 -24.92 16.56 -3.92 -0.06 -24.98 16 10 N -0.61 -16.72 3.33 -835.45 -2.78 -19.50 16 11 C 0.08 1.19 4.86 86.73 0.42 1.61 16 12 C -0.11 -1.79 6.42 31.79 0.20 -1.59 16 13 C -0.10 -2.79 3.03 -9.48 -0.03 -2.82 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.16 5.97 5.72 86.38 0.49 6.46 16 16 N -0.75 -37.86 5.55 -343.45 -1.90 -39.77 16 17 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 20 N -0.97 -61.30 13.06 21.65 0.28 -61.02 16 21 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.12 3.94 6.35 86.78 0.55 4.49 16 26 C -0.06 -1.60 9.49 22.27 0.21 -1.39 16 27 C -0.11 -2.55 9.95 22.30 0.22 -2.33 16 28 C 0.13 2.86 6.61 40.36 0.27 3.13 16 29 N -0.52 -10.75 10.23 -176.58 -1.81 -12.55 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.11 8.07 -2.39 -0.02 0.09 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 35 H 0.20 2.06 2.69 -10.46 -0.03 2.03 16 36 H 0.11 1.05 6.75 -2.38 -0.02 1.03 16 37 H 0.10 1.08 6.73 -2.39 -0.02 1.07 16 38 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 0.93 7.96 -2.39 -0.02 0.91 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 43 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 44 H 0.04 1.77 7.99 -2.38 -0.02 1.75 16 45 H 0.06 2.23 7.90 -2.39 -0.02 2.21 16 46 H 0.13 3.50 7.63 -2.91 -0.02 3.48 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -83.90 384.19 1.75 -82.15 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.27 Total: 23.65 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.73 Total: 3.30 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -6.21 Total: -132.84 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -83.90 1.75 -82.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567145634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.038 kcal (2) G-P(sol) polarization free energy of solvation -83.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds