Wall clock time and date at job start Tue Mar 31 2020 22:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45560 * 2 1 4 4 C 1.38361 * 119.29991 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.25622 * 4 3 2 6 6 C 1.47847 * 120.55378 * 179.72193 * 5 4 3 7 7 O 1.21549 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46924 * 180.02562 * 9 8 6 11 11 C 1.38234 * 119.99624 * 269.72540 * 10 9 8 12 12 C 1.38237 * 119.99805 * 179.76567 * 11 10 9 13 13 C 1.38232 * 119.99930 * 0.51235 * 12 11 10 14 14 C 1.50692 * 120.00242 * 179.72479 * 13 12 11 15 15 C 1.53000 * 109.47274 * 270.02165 * 14 13 12 16 16 N 1.46504 * 109.47542 * 180.02562 * 15 14 13 17 17 C 1.36931 * 120.00055 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00134 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00181 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99632 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47312 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47032 * 119.99854 * 21 19 17 24 24 H 1.48503 * 109.47346 * 239.99747 * 21 19 17 25 25 C 1.38236 * 119.99820 * 359.73887 * 13 12 11 26 26 C 1.38228 * 119.99981 * 90.00028 * 10 9 8 27 27 C 1.39516 * 118.88765 * 359.48022 * 5 4 3 28 28 N 1.31704 * 120.56348 * 0.53073 * 27 5 4 29 29 H 1.08997 * 109.47242 * 90.00023 * 1 2 3 30 30 H 1.09004 * 109.46956 * 209.99964 * 1 2 3 31 31 H 1.09004 * 109.47467 * 329.99822 * 1 2 3 32 32 H 1.08002 * 120.35084 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 34 34 H 0.96997 * 120.00032 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.46950 * 300.00299 * 9 8 6 36 36 H 1.08995 * 109.47284 * 60.00429 * 9 8 6 37 37 H 1.08004 * 120.00277 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.99865 * 180.23122 * 12 11 10 39 39 H 1.09004 * 109.47230 * 30.01484 * 14 13 12 40 40 H 1.08998 * 109.47967 * 150.01644 * 14 13 12 41 41 H 1.09005 * 109.46910 * 299.99567 * 15 14 13 42 42 H 1.08999 * 109.47524 * 59.99153 * 15 14 13 43 43 H 0.96996 * 119.99524 * 359.97438 * 16 15 14 44 44 H 0.96998 * 119.99866 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.99750 * 179.97438 * 25 13 12 46 46 H 1.07999 * 120.00327 * 0.02562 * 26 10 9 47 47 H 1.07997 * 119.72167 * 180.25333 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0044 6 6 5.7083 -0.0964 -0.0103 7 8 6.3600 0.9296 -0.0103 8 7 6.3321 -1.2910 -0.0145 9 6 7.7958 -1.3530 -0.0198 10 6 8.2376 -2.7939 -0.0244 11 6 8.4498 -3.4555 1.1706 12 6 8.8503 -4.7786 1.1664 13 6 9.0488 -5.4368 -0.0328 14 6 9.4914 -6.8773 -0.0375 15 6 11.0201 -6.9411 -0.0429 16 7 11.4505 -8.3415 -0.0480 17 6 12.7851 -8.6476 -0.0528 18 1 13.5206 -7.8567 -0.0532 19 6 13.1929 -9.9745 -0.0572 20 7 12.2966 -10.9383 -0.0562 21 14 15.0136 -10.3920 -0.0644 22 1 15.8090 -9.1380 -0.0638 23 1 15.3438 -11.1877 1.1453 24 1 15.3354 -11.1824 -1.2798 25 6 8.8416 -4.7735 -1.2279 26 6 8.4360 -3.4520 -1.2237 27 6 3.4717 -1.2042 0.0014 28 7 2.1558 -1.1486 0.0008 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6442 2.1382 0.0004 33 1 4.1273 2.1266 0.0001 34 1 5.8120 -2.1098 -0.0141 35 1 8.1774 -0.8534 -0.9102 36 1 8.1837 -0.8566 0.8697 37 1 8.2987 -2.9400 2.1076 38 1 9.0125 -5.2966 2.1000 39 1 9.1101 -7.3774 0.8528 40 1 9.1040 -7.3737 -0.9272 41 1 11.4015 -6.4410 -0.9331 42 1 11.4077 -6.4447 0.8468 43 1 10.7899 -9.0518 -0.0473 44 1 12.5816 -11.8655 -0.0588 45 1 8.9971 -5.2877 -2.1649 46 1 8.2749 -2.9336 -2.1573 47 1 3.9670 -2.1639 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567181681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:26 Heat of formation + Delta-G solvation = 23.857874 kcal Electronic energy + Delta-G solvation = -26495.751742 eV Core-core repulsion = 22643.018526 eV Total energy + Delta-G solvation = -3852.733216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13868 -39.87467 -39.14546 -35.91511 -34.85640 -33.70417 -32.97998 -32.67159 -30.97204 -30.95158 -29.16068 -27.99635 -25.67630 -24.35276 -23.67135 -22.96068 -22.76449 -21.61249 -21.05865 -20.50910 -18.63156 -17.39735 -17.17831 -16.45755 -16.03436 -15.95951 -15.75814 -15.35338 -15.23429 -14.86414 -14.76728 -14.64980 -13.84998 -13.68674 -13.67604 -13.55787 -13.43127 -13.29124 -13.02563 -12.84835 -12.66032 -12.64979 -12.53860 -12.34968 -11.25110 -11.22839 -11.12269 -10.90860 -10.70480 -10.67731 -10.62021 -10.44803 -10.04855 -9.94977 -9.73283 -9.64921 -9.40265 -8.96419 -8.87515 -8.60290 -6.93722 -5.77612 -3.06539 0.10684 0.68243 1.14887 1.37961 2.39924 2.78144 3.31553 3.43027 3.48741 3.51047 3.61305 3.75761 4.12013 4.25152 4.30795 4.39617 4.50805 4.59016 4.72312 4.74869 4.94879 4.97845 5.01376 5.04193 5.05570 5.09502 5.35431 5.44002 5.46827 5.51590 5.52743 5.55604 5.58970 5.74772 5.83363 5.89272 5.93737 6.03457 6.05744 6.18190 6.26408 6.42856 6.45916 6.59290 6.80000 6.91493 6.96642 7.04411 7.33433 7.70082 7.73873 8.41273 9.52504 10.09679 10.44618 11.45400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.001493 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.848569 B =18751.249364 C =19463.704441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.150 3.850 3 C -0.180 4.180 4 C -0.013 4.013 5 C -0.195 4.195 6 C 0.564 3.436 7 O -0.536 6.536 8 N -0.718 5.718 9 C 0.166 3.834 10 C -0.130 4.130 11 C -0.098 4.098 12 C -0.118 4.118 13 C -0.050 4.050 14 C -0.095 4.095 15 C 0.161 3.839 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.118 4.118 26 C -0.098 4.098 27 C 0.143 3.857 28 N -0.487 5.487 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.402 0.598 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.171 25.401 0.117 35.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.013 3.987 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.200 4.200 6 C 0.350 3.650 7 O -0.413 6.413 8 N -0.370 5.370 9 C 0.044 3.956 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.136 4.136 13 C -0.051 4.051 14 C -0.133 4.133 15 C 0.033 3.967 16 N -0.379 5.379 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.016 4.016 28 N -0.197 5.197 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.969 25.395 0.118 34.920 hybrid contribution 1.184 -0.246 -0.015 1.210 sum -22.785 25.148 0.103 33.935 Atomic orbital electron populations 1.20817 0.88294 1.03984 1.03582 1.21601 0.97479 0.88276 0.91353 1.22008 0.94505 0.99681 1.03823 1.21748 0.94059 0.97986 0.90095 1.20971 0.94342 0.95684 1.09025 1.18039 0.86764 0.83715 0.76494 1.90793 1.66898 1.33843 1.49803 1.46049 1.07818 1.08146 1.75012 1.20204 0.78917 0.93244 1.03263 1.19680 1.04502 0.95003 0.93865 1.21020 0.98818 0.94587 0.97202 1.21130 0.99878 0.94481 0.98120 1.20096 0.95542 0.96521 0.92942 1.20879 0.98103 0.91059 1.03222 1.20588 0.89784 0.88238 0.98061 1.42377 1.05146 1.00755 1.89584 1.19286 0.83647 0.91585 1.42541 0.91105 1.24748 0.97648 0.95621 1.03014 1.69670 1.31837 0.98845 1.57895 0.86107 0.84872 0.77969 0.77204 1.20524 1.21835 1.21828 1.21132 0.99837 0.94477 0.98162 1.21016 0.98829 0.94628 0.97158 1.22986 0.89455 0.97483 0.91719 1.67569 1.09497 1.29193 1.13419 0.89826 0.89999 0.90281 0.83915 0.83382 0.76243 0.90409 0.90401 0.86126 0.85660 0.90750 0.90748 0.96242 0.96240 0.78277 0.93553 0.85660 0.86130 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.16 36.01 0.37 -0.06 16 2 C 0.15 1.02 6.78 -82.51 -0.56 0.46 16 3 C -0.18 -1.06 9.72 -39.49 -0.38 -1.44 16 4 C -0.01 -0.09 9.72 -38.87 -0.38 -0.47 16 5 C -0.20 -1.62 5.89 -104.82 -0.62 -2.24 16 6 C 0.56 5.52 7.78 -12.33 -0.10 5.43 16 7 O -0.54 -7.01 16.42 5.32 0.09 -6.93 16 8 N -0.72 -5.78 5.50 -62.43 -0.34 -6.12 16 9 C 0.17 1.47 5.80 -5.19 -0.03 1.44 16 10 C -0.13 -1.26 5.25 -104.62 -0.55 -1.81 16 11 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 12 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 13 C -0.05 -0.67 5.13 -104.63 -0.54 -1.21 16 14 C -0.09 -1.51 5.46 -27.89 -0.15 -1.66 16 15 C 0.16 3.25 6.24 -4.04 -0.03 3.23 16 16 N -0.73 -18.78 5.60 -59.90 -0.34 -19.12 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 26 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 27 C 0.14 1.09 10.71 -17.13 -0.18 0.90 16 28 N -0.49 -4.16 10.25 -9.14 -0.09 -4.25 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.15 1.01 7.74 -52.49 -0.41 0.60 16 34 H 0.40 2.50 6.53 -40.82 -0.27 2.23 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 40 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.16 0.85 6.42 -52.49 -0.34 0.51 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -34.46 402.43 -10.62 -45.08 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.77 Total: 6.67 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -4.93 Total: -11.28 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.05 Total: -57.11 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.09 Total: -6.93 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.46 -10.62 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567181681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.936 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds