Wall clock time and date at job start Tue Mar 31 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45560 * 2 1 4 4 C 1.38361 * 119.29991 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.25622 * 4 3 2 6 6 C 1.47847 * 120.55378 * 179.72193 * 5 4 3 7 7 O 1.21549 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46924 * 180.02562 * 9 8 6 11 11 C 1.38234 * 119.99624 * 269.72540 * 10 9 8 12 12 C 1.38237 * 119.99805 * 179.76567 * 11 10 9 13 13 C 1.38232 * 119.99930 * 0.51235 * 12 11 10 14 14 C 1.50692 * 120.00242 * 179.72479 * 13 12 11 15 15 C 1.53000 * 109.47274 * 270.02165 * 14 13 12 16 16 N 1.46504 * 109.47542 * 180.02562 * 15 14 13 17 17 C 1.36931 * 120.00055 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00134 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00181 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99632 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47312 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47032 * 119.99854 * 21 19 17 24 24 H 1.48503 * 109.47346 * 239.99747 * 21 19 17 25 25 C 1.38236 * 119.99820 * 359.73887 * 13 12 11 26 26 C 1.38228 * 119.99981 * 90.00028 * 10 9 8 27 27 C 1.39516 * 118.88765 * 359.48022 * 5 4 3 28 28 N 1.31704 * 120.56348 * 0.53073 * 27 5 4 29 29 H 1.08997 * 109.47242 * 90.00023 * 1 2 3 30 30 H 1.09004 * 109.46956 * 209.99964 * 1 2 3 31 31 H 1.09004 * 109.47467 * 329.99822 * 1 2 3 32 32 H 1.08002 * 120.35084 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 34 34 H 0.96997 * 120.00032 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.46950 * 300.00299 * 9 8 6 36 36 H 1.08995 * 109.47284 * 60.00429 * 9 8 6 37 37 H 1.08004 * 120.00277 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.99865 * 180.23122 * 12 11 10 39 39 H 1.09004 * 109.47230 * 30.01484 * 14 13 12 40 40 H 1.08998 * 109.47967 * 150.01644 * 14 13 12 41 41 H 1.09005 * 109.46910 * 299.99567 * 15 14 13 42 42 H 1.08999 * 109.47524 * 59.99153 * 15 14 13 43 43 H 0.96996 * 119.99524 * 359.97438 * 16 15 14 44 44 H 0.96998 * 119.99866 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.99750 * 179.97438 * 25 13 12 46 46 H 1.07999 * 120.00327 * 0.02562 * 26 10 9 47 47 H 1.07997 * 119.72167 * 180.25333 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0044 6 6 5.7083 -0.0964 -0.0103 7 8 6.3600 0.9296 -0.0103 8 7 6.3321 -1.2910 -0.0145 9 6 7.7958 -1.3530 -0.0198 10 6 8.2376 -2.7939 -0.0244 11 6 8.4498 -3.4555 1.1706 12 6 8.8503 -4.7786 1.1664 13 6 9.0488 -5.4368 -0.0328 14 6 9.4914 -6.8773 -0.0375 15 6 11.0201 -6.9411 -0.0429 16 7 11.4505 -8.3415 -0.0480 17 6 12.7851 -8.6476 -0.0528 18 1 13.5206 -7.8567 -0.0532 19 6 13.1929 -9.9745 -0.0572 20 7 12.2966 -10.9383 -0.0562 21 14 15.0136 -10.3920 -0.0644 22 1 15.8090 -9.1380 -0.0638 23 1 15.3438 -11.1877 1.1453 24 1 15.3354 -11.1824 -1.2798 25 6 8.8416 -4.7735 -1.2279 26 6 8.4360 -3.4520 -1.2237 27 6 3.4717 -1.2042 0.0014 28 7 2.1558 -1.1486 0.0008 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6442 2.1382 0.0004 33 1 4.1273 2.1266 0.0001 34 1 5.8120 -2.1098 -0.0141 35 1 8.1774 -0.8534 -0.9102 36 1 8.1837 -0.8566 0.8697 37 1 8.2987 -2.9400 2.1076 38 1 9.0125 -5.2966 2.1000 39 1 9.1101 -7.3774 0.8528 40 1 9.1040 -7.3737 -0.9272 41 1 11.4015 -6.4410 -0.9331 42 1 11.4077 -6.4447 0.8468 43 1 10.7899 -9.0518 -0.0473 44 1 12.5816 -11.8655 -0.0588 45 1 8.9971 -5.2877 -2.1649 46 1 8.2749 -2.9336 -2.1573 47 1 3.9670 -2.1639 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567181681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:25 Heat of formation + Delta-G solvation = 2.698169 kcal Electronic energy + Delta-G solvation = -26496.669296 eV Core-core repulsion = 22643.018526 eV Total energy + Delta-G solvation = -3853.650770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73921 -40.67039 -39.94977 -37.23666 -36.13035 -34.51423 -34.00258 -33.39699 -32.50688 -31.84876 -30.20565 -28.85595 -26.88004 -25.25501 -24.86332 -23.70467 -23.64520 -23.05587 -21.73828 -21.56581 -19.29729 -19.22249 -17.98987 -17.13896 -16.89275 -16.80501 -16.54063 -16.50082 -16.17310 -16.01129 -15.56631 -15.40050 -15.36346 -15.08692 -14.97653 -14.44544 -14.29177 -14.19558 -13.75209 -13.70851 -13.51769 -13.24765 -13.18718 -13.01399 -12.94274 -12.89937 -12.51983 -12.37786 -12.11628 -12.02755 -11.80979 -11.69445 -11.44438 -11.00010 -10.97109 -10.53256 -10.32340 -9.97015 -9.82466 -9.57306 -9.03696 -7.97684 -5.27356 -0.44955 0.16902 0.24427 0.50119 1.46911 1.47655 1.58083 1.72410 2.06587 2.54392 2.75653 2.86282 3.16395 3.36123 3.59591 3.66362 3.71714 3.79258 3.81847 3.87325 3.98493 4.14054 4.17519 4.28078 4.37424 4.45039 4.49054 4.55977 4.59350 4.67331 4.71304 4.74380 4.77948 4.79350 5.02352 5.06037 5.06726 5.10826 5.15694 5.23779 5.24899 5.26765 5.45096 5.49351 5.57774 5.60762 5.78143 6.06209 6.24939 6.37276 6.82015 7.03613 7.31084 8.05429 8.29862 9.25975 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.001493 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.848569 B =18751.249364 C =19463.704441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.141 3.859 3 C -0.174 4.174 4 C -0.023 4.023 5 C -0.209 4.209 6 C 0.566 3.434 7 O -0.574 6.574 8 N -0.708 5.708 9 C 0.170 3.830 10 C -0.117 4.117 11 C -0.095 4.095 12 C -0.126 4.126 13 C -0.070 4.070 14 C -0.080 4.080 15 C 0.162 3.838 16 N -0.747 5.747 17 C -0.250 4.250 18 H 0.074 0.926 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.126 4.126 26 C -0.095 4.095 27 C 0.140 3.860 28 N -0.513 5.513 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.150 0.850 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.140 0.860 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.143 27.202 0.117 37.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.194 4.194 4 C -0.049 4.049 5 C -0.214 4.214 6 C 0.353 3.647 7 O -0.455 6.455 8 N -0.359 5.359 9 C 0.047 3.953 10 C -0.117 4.117 11 C -0.113 4.113 12 C -0.144 4.144 13 C -0.071 4.071 14 C -0.117 4.117 15 C 0.035 3.965 16 N -0.390 5.390 17 C -0.381 4.381 18 H 0.092 0.908 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.804 3.196 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.144 4.144 26 C -0.113 4.113 27 C -0.018 4.018 28 N -0.223 5.223 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.191 0.809 33 H 0.167 0.833 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.957 27.210 0.117 36.922 hybrid contribution 1.387 -0.694 -0.015 1.551 sum -23.570 26.517 0.102 35.478 Atomic orbital electron populations 1.20915 0.86336 1.04856 1.04423 1.22147 0.98900 0.88156 0.90338 1.22305 0.93893 1.00699 1.02476 1.21935 0.94960 0.97818 0.90193 1.20911 0.93424 0.96491 1.10596 1.18246 0.87315 0.83426 0.75679 1.90770 1.67742 1.35090 1.51865 1.45934 1.07591 1.08249 1.74169 1.20137 0.79296 0.92447 1.03370 1.19759 1.03264 0.95157 0.93553 1.21213 0.97918 0.93872 0.98319 1.21219 1.00127 0.95292 0.97723 1.19908 0.97760 0.95227 0.94171 1.20640 0.94821 0.93242 1.03030 1.20702 0.92937 0.85342 0.97500 1.42596 1.04249 1.02696 1.89499 1.19674 0.85035 0.91890 1.41532 0.90804 1.25588 1.02021 0.95580 1.03435 1.69819 1.33803 0.98948 1.59338 0.85055 0.79851 0.77916 0.76818 1.19120 1.21813 1.21803 1.21220 1.00089 0.95284 0.97771 1.21209 0.97929 0.93916 0.98268 1.23213 0.89410 0.97945 0.91256 1.67625 1.09849 1.30328 1.14467 0.88849 0.90540 0.88020 0.80930 0.83274 0.75062 0.90385 0.90372 0.84172 0.85492 0.90960 0.90960 0.96462 0.96457 0.79302 0.93878 0.85493 0.84177 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 71.24 0.72 0.11 16 2 C 0.14 1.68 6.78 42.57 0.29 1.96 16 3 C -0.17 -1.70 9.72 22.33 0.22 -1.49 16 4 C -0.02 -0.32 9.72 22.73 0.22 -0.09 16 5 C -0.21 -3.30 5.89 -19.99 -0.12 -3.42 16 6 C 0.57 10.64 7.78 86.79 0.68 11.31 16 7 O -0.57 -14.85 16.42 -3.87 -0.06 -14.91 16 8 N -0.71 -10.31 5.50 -469.70 -2.58 -12.90 16 9 C 0.17 2.70 5.80 85.63 0.50 3.20 16 10 C -0.12 -2.02 5.25 -19.87 -0.10 -2.13 16 11 C -0.09 -1.76 9.70 22.27 0.22 -1.55 16 12 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 13 C -0.07 -1.83 5.13 -19.87 -0.10 -1.93 16 14 C -0.08 -2.54 5.46 29.85 0.16 -2.38 16 15 C 0.16 6.59 6.24 86.38 0.54 7.13 16 16 N -0.75 -38.84 5.60 -343.44 -1.92 -40.76 16 17 C -0.25 -14.25 9.99 84.04 0.84 -13.41 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.62 13.06 21.65 0.28 -59.33 16 21 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 26 C -0.09 -1.76 9.70 22.27 0.22 -1.55 16 27 C 0.14 1.99 10.71 85.02 0.91 2.90 16 28 N -0.51 -8.17 10.25 -182.82 -1.87 -10.04 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.10 8.07 -2.38 -0.02 0.08 16 32 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.15 1.95 7.74 -2.91 -0.02 1.93 16 34 H 0.41 4.38 6.53 -92.71 -0.61 3.77 16 35 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.07 2.30 8.09 -2.38 -0.02 2.28 16 40 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 41 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.38 20.45 7.67 -92.71 -0.71 19.74 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 46 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 47 H 0.18 1.64 6.42 -2.91 -0.02 1.62 16 Total: -1.00 -74.09 402.43 1.62 -72.47 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.32 Total: 27.49 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 6.08 Total: -10.48 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.10 Total: -123.03 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.06 Total: -14.91 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.09 1.62 -72.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567181681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.167 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds