Wall clock time and date at job start Tue Mar 31 2020 22:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 110.65678 * 2 1 4 4 N 1.46499 * 109.47547 * 56.80768 * 3 2 1 5 5 C 1.36935 * 120.00476 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38812 * 120.00460 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00351 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99639 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47234 * 90.00436 * 9 7 5 11 11 H 1.48500 * 109.47566 * 210.00116 * 9 7 5 12 12 H 1.48509 * 109.47403 * 330.00358 * 9 7 5 13 13 C 1.54610 * 110.74033 * 236.80673 * 2 1 3 14 14 C 1.54002 * 105.04446 * 263.51480 * 13 2 1 15 15 N 1.47479 * 107.08506 * 1.30231 * 14 13 2 16 16 C 1.34782 * 127.03544 * 154.51629 * 15 14 13 17 17 O 1.21600 * 120.00129 * 185.30565 * 16 15 14 18 18 C 1.47435 * 119.99535 * 5.30631 * 16 15 14 19 19 C 1.38742 * 120.33944 * 35.05338 * 18 16 15 20 20 C 1.38867 * 120.72837 * 179.97438 * 19 18 16 21 21 C 1.36347 * 121.06053 * 0.25334 * 20 19 18 22 22 C 1.40441 * 120.08183 * 359.45393 * 21 20 19 23 23 C 1.40800 * 121.26543 * 180.26300 * 22 21 20 24 24 C 1.36627 * 118.15979 * 180.29629 * 23 22 21 25 25 C 1.39239 * 119.90414 * 0.02562 * 24 23 22 26 26 N 1.31227 * 121.69531 * 0.02562 * 25 24 23 27 27 C 1.33348 * 121.35439 * 359.95761 * 26 25 24 28 28 C 1.48114 * 105.93434 * 334.78254 * 15 14 13 29 29 H 1.09002 * 109.46743 * 183.19280 * 1 2 3 30 30 H 1.08997 * 109.47024 * 303.19064 * 1 2 3 31 31 H 1.09000 * 109.46530 * 63.19420 * 1 2 3 32 32 H 1.09005 * 109.47095 * 176.80756 * 3 2 1 33 33 H 1.09003 * 109.47554 * 296.80814 * 3 2 1 34 34 H 0.97004 * 119.99588 * 359.97438 * 4 3 2 35 35 H 0.97004 * 119.99760 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.32827 * 144.62160 * 13 2 1 37 37 H 1.09003 * 110.41751 * 22.44545 * 13 2 1 38 38 H 1.09005 * 109.91152 * 241.94487 * 14 13 2 39 39 H 1.08999 * 109.91992 * 120.66884 * 14 13 2 40 40 H 1.08003 * 119.63009 * 359.97438 * 19 18 16 41 41 H 1.08005 * 119.46824 * 179.97438 * 20 19 18 42 42 H 1.07995 * 119.95892 * 179.72367 * 21 20 19 43 43 H 1.08004 * 120.91951 * 0.27207 * 23 22 21 44 44 H 1.08000 * 120.04930 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.15042 * 180.02562 * 25 24 23 46 46 H 1.08997 * 110.66442 * 157.50450 * 28 15 14 47 47 H 1.09001 * 110.65930 * 280.62374 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5346 2.1553 1.1558 5 6 1.8809 3.4636 1.3649 6 1 2.5490 3.9617 0.6780 7 6 1.3742 4.1492 2.4604 8 7 1.7075 5.4064 2.6616 9 14 0.2193 3.2873 3.6490 10 1 1.0098 2.6457 4.7299 11 1 -0.7135 4.2800 4.2405 12 1 -0.5569 2.2511 2.9215 13 6 2.0776 -0.7916 -1.2100 14 6 2.3763 -2.2003 -0.6640 15 7 1.9872 -2.2051 0.7585 16 6 1.6221 -3.2721 1.4966 17 8 1.2322 -3.1172 2.6380 18 6 1.6955 -4.6271 0.9201 19 6 2.7106 -4.9577 0.0340 20 6 2.7877 -6.2316 -0.5134 21 6 1.8683 -7.1885 -0.2006 22 6 0.8278 -6.8984 0.6970 23 6 -0.1318 -7.8693 1.0419 24 6 -1.1204 -7.5166 1.9166 25 6 -1.1573 -6.2264 2.4389 26 7 -0.2610 -5.3249 2.1134 27 6 0.7292 -5.6055 1.2655 28 6 2.0734 -0.7966 1.2084 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3633 0.5626 0.8600 31 1 -0.3632 0.4635 -0.9173 32 1 3.1581 1.4096 0.0572 33 1 1.7643 1.9351 -0.9172 34 1 0.9342 1.7080 1.7726 35 1 1.3531 5.8856 3.4270 36 1 2.9911 -0.3287 -1.5833 37 1 1.3293 -0.8429 -2.0009 38 1 3.4403 -2.4172 -0.7586 39 1 1.7937 -2.9417 -1.2108 40 1 3.4489 -4.2160 -0.2330 41 1 3.5863 -6.4667 -1.2016 42 1 1.9427 -8.1722 -0.6401 43 1 -0.0879 -8.8652 0.6262 44 1 -1.8720 -8.2375 2.2025 45 1 -1.9439 -5.9609 3.1296 46 1 1.4489 -0.6346 2.0870 47 1 3.1077 -0.5213 1.4143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569675156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:55 Heat of formation + Delta-G solvation = 48.972127 kcal Electronic energy + Delta-G solvation = -29191.777208 eV Core-core repulsion = 25340.133028 eV Total energy + Delta-G solvation = -3851.644181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31690 -39.99679 -37.97261 -37.21532 -34.94540 -33.78521 -32.67504 -30.99260 -30.84894 -30.35972 -29.37538 -26.77371 -25.96469 -24.85812 -23.90146 -23.64681 -22.66590 -21.67278 -19.66233 -18.99390 -18.74024 -17.78213 -17.27461 -17.10171 -16.41881 -15.84619 -15.44683 -15.03312 -14.78999 -14.47860 -14.40839 -14.31968 -13.93637 -13.77492 -13.65224 -13.37330 -13.18559 -13.07901 -12.59396 -12.45029 -12.21672 -12.16617 -12.09678 -11.72333 -11.70096 -11.58932 -11.28952 -10.87627 -10.84111 -10.54556 -10.46355 -10.29299 -10.05592 -9.97876 -9.52479 -9.47190 -9.17437 -8.85772 -8.66883 -8.53384 -7.18599 -5.72770 -3.07905 -0.16024 0.44919 1.44606 2.44070 2.85791 3.06620 3.44358 3.48502 3.52549 3.81667 3.94369 4.11910 4.35195 4.35637 4.51182 4.52485 4.61515 4.64715 4.70902 4.74651 4.89034 4.93947 5.04827 5.21484 5.27119 5.33556 5.45078 5.48929 5.55762 5.58739 5.63357 5.64279 5.74425 5.81049 5.83557 5.91417 5.97507 6.00238 6.05475 6.10880 6.22442 6.28188 6.40243 6.47144 6.56492 6.67639 6.73980 7.57387 7.70990 8.03070 8.26015 8.46343 9.25510 9.98268 10.17757 11.45589 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002864 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.458938 B = 9773.131360 C =10843.133271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C 0.174 3.826 4 N -0.755 5.755 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.123 4.123 14 C 0.100 3.900 15 N -0.618 5.618 16 C 0.576 3.424 17 O -0.505 6.505 18 C -0.097 4.097 19 C -0.069 4.069 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.110 4.110 23 C -0.058 4.058 24 C -0.175 4.175 25 C 0.134 3.866 26 N -0.449 5.449 27 C 0.161 3.839 28 C 0.119 3.881 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.362 0.638 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -31.644 -10.658 33.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.353 5.353 16 C 0.364 3.636 17 O -0.380 6.380 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.141 4.141 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.084 4.084 24 C -0.195 4.195 25 C -0.038 4.038 26 N -0.155 5.155 27 C 0.038 3.962 28 C -0.003 4.003 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.103 0.897 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.671 -30.515 -9.677 32.019 hybrid contribution -0.802 -1.402 0.525 1.698 sum -1.473 -31.917 -9.152 33.236 Atomic orbital electron populations 1.21724 0.93626 1.00848 1.02611 1.21854 0.96549 0.96115 0.93972 1.20599 0.96031 0.87436 0.91255 1.42770 1.57351 1.11585 1.28405 1.19033 1.23865 0.86088 1.08281 0.89204 1.24643 1.00174 0.95774 0.98415 1.69698 1.48560 1.09120 1.30880 0.86626 0.81491 0.78852 0.82029 1.20910 1.21702 1.20272 1.22576 1.02162 0.93611 0.97783 1.22249 0.99542 0.98734 0.81805 1.48716 1.67288 1.07816 1.11502 1.17491 0.77831 0.82829 0.85445 1.90846 1.44266 1.85200 1.17641 1.19841 0.96694 0.94044 0.99513 1.21648 0.96752 0.97263 0.93218 1.20855 0.99662 0.92921 1.00709 1.21146 0.93062 0.99764 0.95532 1.18810 0.97879 0.94582 0.99969 1.21465 0.92717 0.98730 0.95535 1.21963 1.00088 0.98396 0.99027 1.23160 0.95621 0.89012 0.96020 1.68198 1.01755 1.34674 1.10897 1.18585 0.93337 0.90794 0.93474 1.22521 1.01757 0.77968 0.98026 0.93420 0.91882 0.92366 0.95192 0.95046 0.80439 0.93092 0.89910 0.90438 0.91443 0.91022 0.84194 0.84716 0.84857 0.84204 0.84332 0.82198 0.89687 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.30 37.16 0.31 -1.79 16 2 C -0.08 -1.27 0.64 -152.82 -0.10 -1.37 16 3 C 0.17 3.26 5.11 -4.05 -0.02 3.24 16 4 N -0.75 -17.99 4.96 -59.91 -0.30 -18.29 16 5 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.81 13.97 55.49 0.78 -29.04 16 9 Si 0.88 23.01 27.74 -169.99 -4.71 18.30 16 10 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 13 C -0.12 -1.36 6.09 -25.36 -0.15 -1.51 16 14 C 0.10 1.03 5.23 -2.98 -0.02 1.01 16 15 N -0.62 -8.86 3.19 -171.25 -0.55 -9.41 16 16 C 0.58 9.43 7.42 -12.51 -0.09 9.34 16 17 O -0.51 -10.43 16.15 5.28 0.09 -10.35 16 18 C -0.10 -1.28 5.51 -104.61 -0.58 -1.86 16 19 C -0.07 -0.63 8.17 -39.16 -0.32 -0.95 16 20 C -0.12 -0.85 9.93 -40.03 -0.40 -1.25 16 21 C -0.08 -0.54 9.75 -39.43 -0.38 -0.92 16 22 C -0.11 -1.07 5.74 -106.83 -0.61 -1.68 16 23 C -0.06 -0.43 9.89 -39.20 -0.39 -0.81 16 24 C -0.17 -1.30 10.03 -39.79 -0.40 -1.70 16 25 C 0.13 1.40 11.15 -17.44 -0.19 1.21 16 26 N -0.45 -6.58 8.99 -10.76 -0.10 -6.68 16 27 C 0.16 2.15 6.58 -84.58 -0.56 1.59 16 28 C 0.12 1.94 5.68 -2.31 -0.01 1.93 16 29 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.06 1.17 6.69 -51.93 -0.35 0.83 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.36 8.66 4.07 -40.82 -0.17 8.49 16 35 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 36 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 37 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.07 0.54 7.04 -51.93 -0.37 0.18 16 39 H 0.07 0.65 7.20 -51.93 -0.37 0.28 16 40 H 0.14 1.05 5.71 -52.48 -0.30 0.75 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.08 1.63 7.71 -51.93 -0.40 1.23 16 47 H 0.08 1.27 8.02 -51.93 -0.42 0.85 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -37.67 378.19 -9.84 -47.51 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.58 Total: 4.79 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -4.17 Total: -2.53 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.16 Total: -63.42 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.67 -9.84 -47.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569675156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.481 kcal (2) G-P(sol) polarization free energy of solvation -37.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds