Wall clock time and date at job start Tue Mar 31 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 110.65678 * 2 1 4 4 N 1.46499 * 109.47547 * 56.80768 * 3 2 1 5 5 C 1.36935 * 120.00476 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38812 * 120.00460 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00351 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99639 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47234 * 90.00436 * 9 7 5 11 11 H 1.48500 * 109.47566 * 210.00116 * 9 7 5 12 12 H 1.48509 * 109.47403 * 330.00358 * 9 7 5 13 13 C 1.54610 * 110.74033 * 236.80673 * 2 1 3 14 14 C 1.54002 * 105.04446 * 263.51480 * 13 2 1 15 15 N 1.47479 * 107.08506 * 1.30231 * 14 13 2 16 16 C 1.34782 * 127.03544 * 154.51629 * 15 14 13 17 17 O 1.21600 * 120.00129 * 185.30565 * 16 15 14 18 18 C 1.47435 * 119.99535 * 5.30631 * 16 15 14 19 19 C 1.38742 * 120.33944 * 35.05338 * 18 16 15 20 20 C 1.38867 * 120.72837 * 179.97438 * 19 18 16 21 21 C 1.36347 * 121.06053 * 0.25334 * 20 19 18 22 22 C 1.40441 * 120.08183 * 359.45393 * 21 20 19 23 23 C 1.40800 * 121.26543 * 180.26300 * 22 21 20 24 24 C 1.36627 * 118.15979 * 180.29629 * 23 22 21 25 25 C 1.39239 * 119.90414 * 0.02562 * 24 23 22 26 26 N 1.31227 * 121.69531 * 0.02562 * 25 24 23 27 27 C 1.33348 * 121.35439 * 359.95761 * 26 25 24 28 28 C 1.48114 * 105.93434 * 334.78254 * 15 14 13 29 29 H 1.09002 * 109.46743 * 183.19280 * 1 2 3 30 30 H 1.08997 * 109.47024 * 303.19064 * 1 2 3 31 31 H 1.09000 * 109.46530 * 63.19420 * 1 2 3 32 32 H 1.09005 * 109.47095 * 176.80756 * 3 2 1 33 33 H 1.09003 * 109.47554 * 296.80814 * 3 2 1 34 34 H 0.97004 * 119.99588 * 359.97438 * 4 3 2 35 35 H 0.97004 * 119.99760 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.32827 * 144.62160 * 13 2 1 37 37 H 1.09003 * 110.41751 * 22.44545 * 13 2 1 38 38 H 1.09005 * 109.91152 * 241.94487 * 14 13 2 39 39 H 1.08999 * 109.91992 * 120.66884 * 14 13 2 40 40 H 1.08003 * 119.63009 * 359.97438 * 19 18 16 41 41 H 1.08005 * 119.46824 * 179.97438 * 20 19 18 42 42 H 1.07995 * 119.95892 * 179.72367 * 21 20 19 43 43 H 1.08004 * 120.91951 * 0.27207 * 23 22 21 44 44 H 1.08000 * 120.04930 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.15042 * 180.02562 * 25 24 23 46 46 H 1.08997 * 110.66442 * 157.50450 * 28 15 14 47 47 H 1.09001 * 110.65930 * 280.62374 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5346 2.1553 1.1558 5 6 1.8809 3.4636 1.3649 6 1 2.5490 3.9617 0.6780 7 6 1.3742 4.1492 2.4604 8 7 1.7075 5.4064 2.6616 9 14 0.2193 3.2873 3.6490 10 1 1.0098 2.6457 4.7299 11 1 -0.7135 4.2800 4.2405 12 1 -0.5569 2.2511 2.9215 13 6 2.0776 -0.7916 -1.2100 14 6 2.3763 -2.2003 -0.6640 15 7 1.9872 -2.2051 0.7585 16 6 1.6221 -3.2721 1.4966 17 8 1.2322 -3.1172 2.6380 18 6 1.6955 -4.6271 0.9201 19 6 2.7106 -4.9577 0.0340 20 6 2.7877 -6.2316 -0.5134 21 6 1.8683 -7.1885 -0.2006 22 6 0.8278 -6.8984 0.6970 23 6 -0.1318 -7.8693 1.0419 24 6 -1.1204 -7.5166 1.9166 25 6 -1.1573 -6.2264 2.4389 26 7 -0.2610 -5.3249 2.1134 27 6 0.7292 -5.6055 1.2655 28 6 2.0734 -0.7966 1.2084 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3633 0.5626 0.8600 31 1 -0.3632 0.4635 -0.9173 32 1 3.1581 1.4096 0.0572 33 1 1.7643 1.9351 -0.9172 34 1 0.9342 1.7080 1.7726 35 1 1.3531 5.8856 3.4270 36 1 2.9911 -0.3287 -1.5833 37 1 1.3293 -0.8429 -2.0009 38 1 3.4403 -2.4172 -0.7586 39 1 1.7937 -2.9417 -1.2108 40 1 3.4489 -4.2160 -0.2330 41 1 3.5863 -6.4667 -1.2016 42 1 1.9427 -8.1722 -0.6401 43 1 -0.0879 -8.8652 0.6262 44 1 -1.8720 -8.2375 2.2025 45 1 -1.9439 -5.9609 3.1296 46 1 1.4489 -0.6346 2.0870 47 1 3.1077 -0.5213 1.4143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569675156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:54 Heat of formation + Delta-G solvation = 23.090667 kcal Electronic energy + Delta-G solvation = -29192.899513 eV Core-core repulsion = 25340.133028 eV Total energy + Delta-G solvation = -3852.766485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07632 -41.04899 -39.17330 -37.93978 -36.62495 -34.63351 -34.22237 -32.70267 -31.55697 -31.18669 -30.52063 -28.09904 -27.49036 -25.70873 -24.92008 -24.48881 -23.75106 -23.10170 -20.67171 -20.43273 -19.61053 -19.28207 -18.25628 -17.86503 -17.35406 -17.01403 -16.57869 -16.40407 -15.84253 -15.60473 -15.59694 -15.31618 -15.17137 -14.92023 -14.76769 -14.53800 -14.29632 -14.03419 -13.92007 -13.72875 -13.51912 -13.31735 -13.10806 -12.93899 -12.89208 -12.73556 -12.61576 -12.29535 -12.23556 -11.95216 -11.71701 -11.62420 -11.55523 -11.45066 -11.11778 -11.01127 -10.28821 -9.82180 -9.73651 -9.29475 -9.28367 -8.05925 -5.36448 -0.80660 -0.18600 0.75606 1.31281 1.34487 1.38742 1.70477 1.85038 2.10186 2.42597 3.10406 3.22109 3.26743 3.31794 3.54742 3.58999 3.73917 3.77752 3.83512 3.90774 3.97296 4.02838 4.14784 4.25173 4.27807 4.31205 4.40921 4.47685 4.58086 4.62120 4.69719 4.75173 4.83406 4.89616 4.92194 4.97900 5.03407 5.03728 5.07069 5.09205 5.22172 5.26552 5.29006 5.36195 5.41537 5.56511 5.75158 5.83199 6.19450 6.49801 7.01117 7.05674 7.12979 7.83725 7.99964 9.15789 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002864 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.458938 B = 9773.131360 C =10843.133271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 C 0.171 3.829 4 N -0.760 5.760 5 C -0.223 4.223 6 H 0.068 0.932 7 C -0.057 4.057 8 N -0.980 5.980 9 Si 0.938 3.062 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.264 1.264 13 C -0.113 4.113 14 C 0.098 3.902 15 N -0.616 5.616 16 C 0.570 3.430 17 O -0.571 6.571 18 C -0.144 4.144 19 C -0.048 4.048 20 C -0.125 4.125 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.047 4.047 24 C -0.177 4.177 25 C 0.118 3.882 26 N -0.516 5.516 27 C 0.130 3.870 28 C 0.118 3.882 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.361 0.639 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.043 0.957 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -36.406 -14.120 39.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 C 0.045 3.955 4 N -0.406 5.406 5 C -0.354 4.354 6 H 0.086 0.914 7 C -0.249 4.249 8 N -0.631 5.631 9 Si 0.767 3.233 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.189 1.189 13 C -0.151 4.151 14 C -0.024 4.024 15 N -0.350 5.350 16 C 0.360 3.640 17 O -0.450 6.450 18 C -0.148 4.148 19 C -0.068 4.068 20 C -0.143 4.143 21 C -0.075 4.075 22 C -0.130 4.130 23 C -0.072 4.072 24 C -0.196 4.196 25 C -0.053 4.053 26 N -0.225 5.225 27 C 0.007 3.993 28 C -0.005 4.005 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.194 0.806 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.174 0.826 41 H 0.194 0.806 42 H 0.195 0.805 43 H 0.202 0.798 44 H 0.192 0.808 45 H 0.184 0.816 46 H 0.061 0.939 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.178 -35.325 -13.215 37.716 hybrid contribution -1.007 -0.024 1.501 1.808 sum -0.829 -35.349 -11.714 37.248 Atomic orbital electron populations 1.21660 0.94363 1.00415 1.01803 1.21723 0.95820 0.94347 0.95903 1.20818 0.96338 0.88985 0.89354 1.42880 1.57405 1.10297 1.30040 1.19082 1.21814 0.87646 1.06881 0.91436 1.25295 1.02546 0.96482 1.00554 1.69836 1.50659 1.10741 1.31876 0.85676 0.79747 0.77966 0.79954 1.21193 1.21705 1.18905 1.22601 1.03430 0.93056 0.95990 1.22561 1.01849 0.98766 0.79178 1.48767 1.66674 1.06387 1.13131 1.18198 0.76501 0.84441 0.84845 1.90784 1.47408 1.86334 1.20484 1.19723 0.99703 0.92395 1.03009 1.21939 0.94980 0.98890 0.91022 1.21308 1.00656 0.91512 1.00813 1.21694 0.91041 1.01528 0.93253 1.19170 0.99623 0.93580 1.00664 1.22016 0.91121 0.99876 0.94230 1.22270 1.01181 0.97458 0.98735 1.23537 0.95181 0.90317 0.96255 1.68107 1.03823 1.37201 1.13321 1.18934 0.93476 0.92633 0.94248 1.22349 1.00845 0.80082 0.97204 0.93355 0.95221 0.90787 0.94366 0.94273 0.80573 0.93369 0.87792 0.88542 0.88131 0.89196 0.82565 0.80565 0.80523 0.79756 0.80818 0.81602 0.93853 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.30 71.99 0.60 -3.42 16 2 C -0.08 -2.28 0.64 -51.09 -0.03 -2.31 16 3 C 0.17 6.28 5.11 86.38 0.44 6.72 16 4 N -0.76 -36.75 4.96 -343.46 -1.70 -38.46 16 5 C -0.22 -12.99 10.47 84.03 0.88 -12.11 16 6 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 7 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 8 N -0.98 -64.42 13.97 21.65 0.30 -64.12 16 9 Si 0.94 49.28 27.74 68.60 1.90 51.18 16 10 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 11 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.26 -13.11 6.52 99.48 0.65 -12.47 16 13 C -0.11 -2.12 6.09 31.48 0.19 -1.93 16 14 C 0.10 1.72 5.23 86.53 0.45 2.17 16 15 N -0.62 -17.74 3.19 -813.95 -2.60 -20.33 16 16 C 0.57 19.66 7.42 86.67 0.64 20.30 16 17 O -0.57 -25.93 16.15 -4.03 -0.07 -25.99 16 18 C -0.14 -3.83 5.51 -19.86 -0.11 -3.94 16 19 C -0.05 -0.75 8.17 22.54 0.18 -0.57 16 20 C -0.13 -1.09 9.93 21.98 0.22 -0.88 16 21 C -0.06 -0.51 9.75 22.37 0.22 -0.29 16 22 C -0.13 -2.16 5.74 -21.29 -0.12 -2.28 16 23 C -0.05 -0.52 9.89 22.52 0.22 -0.30 16 24 C -0.18 -2.30 10.03 22.13 0.22 -2.07 16 25 C 0.12 2.59 11.15 85.02 0.95 3.54 16 26 N -0.52 -16.27 8.99 -187.96 -1.69 -17.96 16 27 C 0.13 3.51 6.58 40.61 0.27 3.78 16 28 C 0.12 3.97 5.68 86.61 0.49 4.46 16 29 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 30 H 0.03 1.13 6.69 -2.39 -0.02 1.11 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.37 8.11 -2.38 -0.02 1.35 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.36 17.69 4.07 -92.71 -0.38 17.32 16 35 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 36 H 0.10 1.59 7.85 -2.39 -0.02 1.57 16 37 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 38 H 0.10 1.16 7.04 -2.38 -0.02 1.14 16 39 H 0.09 1.31 7.20 -2.39 -0.02 1.29 16 40 H 0.16 1.74 5.71 -2.91 -0.02 1.72 16 41 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.18 0.06 8.06 -2.91 -0.02 0.03 16 43 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 46 H 0.04 1.80 7.71 -2.39 -0.02 1.78 16 47 H 0.08 2.60 8.02 -2.39 -0.02 2.58 16 Total: -1.00 -91.82 378.19 2.89 -88.93 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.55 Total: 18.90 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.18 Total: 7.85 kcal Atomic # 7 Polarization: -135.19 SS G_CDS: -5.69 Total: -140.87 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -25.99 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 1.90 Total: 51.18 kcal Total: -91.82 2.89 -88.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569675156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.025 kcal (2) G-P(sol) polarization free energy of solvation -91.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds