Wall clock time and date at job start Tue Mar 31 2020 22:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.64371 * 2 1 4 4 N 1.46506 * 109.47016 * 298.31227 * 3 2 1 5 5 C 1.36933 * 119.99562 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00373 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99784 * 179.97438 * 5 4 3 8 8 N 1.31624 * 120.00310 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00110 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47039 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46750 * 120.00158 * 9 7 5 12 12 H 1.48494 * 109.47318 * 239.99952 * 9 7 5 13 13 C 1.55150 * 110.87061 * 123.25301 * 2 1 3 14 14 C 1.55132 * 101.49167 * 82.76325 * 13 2 1 15 15 N 1.47428 * 104.71867 * 37.29213 * 14 13 2 16 16 C 1.34772 * 125.64597 * 155.81668 * 15 14 13 17 17 O 1.21606 * 120.00150 * 4.80914 * 16 15 14 18 18 C 1.47429 * 120.00152 * 184.80998 * 16 15 14 19 19 C 1.38749 * 120.33078 * 352.18712 * 18 16 15 20 20 C 1.38868 * 120.72419 * 179.97438 * 19 18 16 21 21 C 1.36348 * 121.06086 * 359.71931 * 20 19 18 22 22 C 1.40443 * 120.08077 * 0.55812 * 21 20 19 23 23 C 1.40813 * 121.26233 * 179.72661 * 22 21 20 24 24 C 1.36629 * 118.15156 * 179.70272 * 23 22 21 25 25 C 1.39233 * 119.91182 * 359.97438 * 24 23 22 26 26 N 1.31228 * 121.69657 * 0.02562 * 25 24 23 27 27 C 1.33353 * 121.34914 * 359.97438 * 26 25 24 28 28 C 1.47022 * 108.70430 * 335.55723 * 15 14 13 29 29 H 1.08995 * 109.47447 * 181.68714 * 1 2 3 30 30 H 1.08999 * 109.47119 * 301.68806 * 1 2 3 31 31 H 1.09003 * 109.47200 * 61.68545 * 1 2 3 32 32 H 1.09002 * 109.46850 * 58.31421 * 3 2 1 33 33 H 1.08999 * 109.47144 * 178.31088 * 3 2 1 34 34 H 0.96999 * 120.00170 * 0.02562 * 4 3 2 35 35 H 0.96995 * 120.00497 * 179.97438 * 8 7 5 36 36 H 1.09007 * 111.00594 * 201.00335 * 13 2 1 37 37 H 1.09001 * 111.00446 * 324.85069 * 13 2 1 38 38 H 1.08999 * 110.49129 * 278.45459 * 14 13 2 39 39 H 1.09000 * 110.34215 * 156.05885 * 14 13 2 40 40 H 1.08001 * 119.63769 * 359.96146 * 19 18 16 41 41 H 1.08004 * 119.46804 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.95934 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.92211 * 359.70425 * 23 22 21 44 44 H 1.08006 * 120.04377 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.15288 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.88314 * 120.70209 * 28 15 14 47 47 H 1.08992 * 109.87985 * 241.71335 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 7 1.6285 2.1197 -1.2160 5 6 1.9917 3.4215 -1.4360 6 1 2.6035 3.9410 -0.7133 7 6 1.5744 4.0732 -2.5884 8 7 0.8293 3.4400 -3.4695 9 14 2.0692 5.8494 -2.8882 10 1 2.9009 6.3294 -1.7556 11 1 2.8500 5.9397 -4.1482 12 1 0.8507 6.6907 -2.9996 13 6 2.0827 -0.7949 1.2123 14 6 2.0139 -2.2519 0.6839 15 7 2.3754 -2.1507 -0.7418 16 6 2.8900 -3.1436 -1.4939 17 8 3.0112 -4.2599 -1.0269 18 6 3.3059 -2.8765 -2.8828 19 6 3.0244 -1.6541 -3.4758 20 6 3.4128 -1.3936 -4.7834 21 6 4.0845 -2.3264 -5.5168 22 6 4.3847 -3.5791 -4.9573 23 6 5.0721 -4.5627 -5.6941 24 6 5.3365 -5.7569 -5.0853 25 6 4.9280 -5.9719 -3.7717 26 7 4.2877 -5.0519 -3.0893 27 6 3.9990 -3.8656 -3.6256 28 6 2.0759 -0.7892 -1.2087 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8744 31 1 -0.3634 0.4874 -0.9047 32 1 1.6923 1.9620 0.8745 33 1 3.1587 1.4096 0.0303 34 1 1.0787 1.6532 -1.8649 35 1 0.5374 3.8954 -4.2746 36 1 3.1096 -0.5045 1.4346 37 1 1.4445 -0.6677 2.0867 38 1 1.0049 -2.6497 0.7921 39 1 2.7295 -2.8811 1.2131 40 1 2.4971 -0.8970 -2.9144 41 1 3.1835 -0.4350 -5.2248 42 1 4.3784 -2.1048 -6.5321 43 1 5.3818 -4.3782 -6.7122 44 1 5.8616 -6.5331 -5.6222 45 1 5.1438 -6.9203 -3.3022 46 1 2.9850 -0.3162 -1.5801 47 1 1.3270 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569675157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:58 Heat of formation + Delta-G solvation = 64.634105 kcal Electronic energy + Delta-G solvation = -29531.511542 eV Core-core repulsion = 25680.546516 eV Total energy + Delta-G solvation = -3850.965026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11705 -39.95455 -37.82403 -36.96842 -34.73291 -33.55223 -32.71441 -31.23243 -30.50947 -30.00891 -28.85233 -26.75903 -25.81355 -24.56450 -23.87832 -23.51567 -22.70290 -21.57420 -19.61430 -19.25557 -18.32884 -17.20973 -16.98581 -16.86209 -16.08617 -15.99263 -15.17549 -14.83598 -14.63218 -14.50202 -14.15715 -13.98696 -13.87365 -13.66461 -13.24950 -13.18967 -13.06487 -12.94299 -12.84021 -12.25760 -12.01394 -11.81641 -11.74053 -11.70504 -11.62751 -11.36431 -11.07106 -10.88802 -10.58976 -10.50319 -10.35379 -10.21394 -10.02807 -9.83907 -9.68253 -9.14043 -8.94135 -8.86355 -8.48214 -8.28566 -6.99186 -5.83589 -3.11941 0.11318 0.76112 1.68387 2.76262 3.08147 3.29755 3.38885 3.45834 3.47068 4.13842 4.21645 4.38110 4.49246 4.58448 4.62519 4.71557 4.75915 4.82843 4.95056 5.02459 5.08376 5.26431 5.32526 5.35388 5.41340 5.51877 5.56009 5.60631 5.73788 5.80171 5.83033 5.87021 5.90646 5.93725 5.96679 6.05603 6.14867 6.19583 6.30145 6.31311 6.34783 6.38666 6.49680 6.58208 6.68685 6.74196 6.77468 7.65704 7.65963 7.95561 8.35199 8.42195 9.47311 10.02672 10.37864 11.39106 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003542 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.838265 B = 7902.868536 C = 9949.037199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C 0.167 3.833 4 N -0.731 5.731 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.616 5.616 16 C 0.571 3.429 17 O -0.510 6.510 18 C -0.114 4.114 19 C -0.088 4.088 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.112 4.112 23 C -0.057 4.057 24 C -0.181 4.181 25 C 0.126 3.874 26 N -0.440 5.440 27 C 0.162 3.838 28 C 0.100 3.900 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.176 0.824 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.157 0.843 46 H 0.086 0.914 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -15.434 -1.231 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C 0.039 3.961 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.161 4.161 14 C -0.010 4.010 15 N -0.351 5.351 16 C 0.360 3.640 17 O -0.385 6.385 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.084 4.084 24 C -0.201 4.201 25 C -0.047 4.047 26 N -0.147 5.147 27 C 0.039 3.961 28 C -0.022 4.022 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.192 0.808 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.174 0.826 46 H 0.104 0.896 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.630 -16.019 -0.095 16.980 hybrid contribution 0.362 1.131 -1.552 1.954 sum 5.992 -14.887 -1.646 16.132 Atomic orbital electron populations 1.21767 0.93172 1.00825 1.03278 1.21872 0.96558 0.96120 0.93379 1.20676 0.96187 0.88050 0.91191 1.42370 1.62583 1.11849 1.20755 1.19253 1.26034 0.88471 1.03137 0.91155 1.24696 1.00546 0.98239 0.97281 1.69646 1.40564 1.36348 1.11586 0.86156 0.77621 0.85020 0.77626 1.20604 1.21913 1.21918 1.22918 1.02186 0.93348 0.97685 1.22228 1.00481 0.97508 0.80825 1.48440 1.63280 1.11847 1.11497 1.17595 0.77884 0.83692 0.84799 1.90816 1.54005 1.21059 1.72668 1.19760 1.03152 0.94259 0.94623 1.23191 0.95356 0.96404 0.95808 1.21089 0.97728 1.00339 0.94218 1.21218 0.96611 0.91859 0.99937 1.18825 1.01610 0.96093 0.94924 1.21451 0.94805 0.92524 0.99572 1.21903 1.02701 0.98459 0.97041 1.23116 0.92274 0.98155 0.91139 1.68292 1.10325 1.00176 1.35889 1.18578 0.95769 0.91636 0.90131 1.22674 1.00775 0.81432 0.97292 0.93325 0.92260 0.91170 0.95602 0.95973 0.78237 0.93568 0.90355 0.89703 0.91499 0.90648 0.80757 0.84105 0.84931 0.84384 0.84679 0.82568 0.89620 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.26 37.16 0.31 -1.59 16 2 C -0.08 -1.14 0.61 -152.68 -0.09 -1.24 16 3 C 0.17 3.02 5.07 -4.04 -0.02 3.00 16 4 N -0.73 -16.58 5.15 -59.91 -0.31 -16.89 16 5 C -0.24 -6.19 9.99 -15.06 -0.15 -6.35 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 9 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 C -0.12 -1.50 6.04 -24.47 -0.15 -1.65 16 14 C 0.11 1.49 6.58 -2.41 -0.02 1.47 16 15 N -0.62 -9.48 3.32 -176.03 -0.59 -10.06 16 16 C 0.57 10.08 7.79 -12.52 -0.10 9.98 16 17 O -0.51 -10.31 15.53 5.27 0.08 -10.23 16 18 C -0.11 -1.88 5.90 -104.61 -0.62 -2.50 16 19 C -0.09 -1.31 8.59 -39.16 -0.34 -1.65 16 20 C -0.12 -1.52 9.93 -40.03 -0.40 -1.92 16 21 C -0.08 -0.90 9.75 -39.43 -0.38 -1.29 16 22 C -0.11 -1.47 5.74 -106.82 -0.61 -2.08 16 23 C -0.06 -0.58 9.90 -39.19 -0.39 -0.96 16 24 C -0.18 -1.70 10.03 -39.79 -0.40 -2.10 16 25 C 0.13 1.50 11.15 -17.44 -0.19 1.30 16 26 N -0.44 -7.16 8.47 -10.76 -0.09 -7.25 16 27 C 0.16 2.60 6.61 -84.58 -0.56 2.04 16 28 C 0.10 1.51 3.48 -3.06 -0.01 1.50 16 29 H 0.05 0.62 7.44 -51.93 -0.39 0.24 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.15 7.11 -51.93 -0.37 0.78 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.38 9.00 6.37 -40.82 -0.26 8.74 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 36 H 0.08 0.95 8.04 -51.92 -0.42 0.53 16 37 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 38 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 39 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.18 2.62 2.72 -58.17 -0.16 2.46 16 41 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 45 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.09 1.38 6.36 -51.93 -0.33 1.05 16 47 H 0.08 1.20 6.50 -51.93 -0.34 0.86 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -32.94 376.55 -10.17 -43.10 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.43 Total: 9.19 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -4.21 Total: -4.43 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.26 Total: -59.71 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.94 -10.17 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569675157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.739 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds